pyEQL 1.4.0rc9__cp311-cp311-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyEQL/__init__.py +50 -0
- pyEQL/_phreeqc.cp311-win_amd64.pyd +0 -0
- pyEQL/activity_correction.py +879 -0
- pyEQL/database/geothermal.dat +5693 -0
- pyEQL/database/llnl.dat +19305 -0
- pyEQL/database/phreeqc_license.txt +54 -0
- pyEQL/database/pyeql_db.json +35607 -0
- pyEQL/engines.py +1153 -0
- pyEQL/equilibrium.py +227 -0
- pyEQL/functions.py +281 -0
- pyEQL/phreeqc/__init__.py +5 -0
- pyEQL/phreeqc/bindings.cpp +84 -0
- pyEQL/phreeqc/core.py +239 -0
- pyEQL/phreeqc/database/Amm.dat +1968 -0
- pyEQL/phreeqc/database/CMakeLists.txt +32 -0
- pyEQL/phreeqc/database/ColdChem.dat +267 -0
- pyEQL/phreeqc/database/Concrete_PHR.dat +158 -0
- pyEQL/phreeqc/database/Concrete_PZ.dat +195 -0
- pyEQL/phreeqc/database/Kinec.v2.dat +12039 -0
- pyEQL/phreeqc/database/Kinec_v3.dat +12159 -0
- pyEQL/phreeqc/database/Makefile.am +28 -0
- pyEQL/phreeqc/database/Makefile.in +530 -0
- pyEQL/phreeqc/database/PHREEQC_ThermoddemV1.10_15Dec2020.dat +12965 -0
- pyEQL/phreeqc/database/Tipping_Hurley.dat +4137 -0
- pyEQL/phreeqc/database/__init__.py +0 -0
- pyEQL/phreeqc/database/core10.dat +6824 -0
- pyEQL/phreeqc/database/frezchem.dat +634 -0
- pyEQL/phreeqc/database/iso.dat +7235 -0
- pyEQL/phreeqc/database/llnl.dat +19310 -0
- pyEQL/phreeqc/database/minteq.dat +5654 -0
- pyEQL/phreeqc/database/minteq.v4.dat +13212 -0
- pyEQL/phreeqc/database/phreeqc.dat +1972 -0
- pyEQL/phreeqc/database/phreeqc_rates.dat +3158 -0
- pyEQL/phreeqc/database/pitzer.dat +1044 -0
- pyEQL/phreeqc/database/sit.dat +14348 -0
- pyEQL/phreeqc/database/wateq4f.dat +4036 -0
- pyEQL/phreeqc/ext/README.md +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/CMakeLists.txt +476 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/INSTALL +302 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqc.rc +61 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqcConfig.cmake.in +4 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.am +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.in +816 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/aclocal.m4 +1217 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/ALL_BUILD.vcxproj +185 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/ALL_BUILD.vcxproj.filters +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/generate.stamp +1 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/generate.stamp.depend +79 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CTestTestfile.cmake +6 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Continuous.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Continuous.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/DartConfiguration.tcl +109 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Experimental.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Experimental.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/INSTALL.vcxproj +209 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/INSTALL.vcxproj.filters +13 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/CSelectedOutput.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Dictionary.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ExchComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Exchange.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/GasComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/GasPhase.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.lib.recipe +11 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.command.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.read.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.write.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Cl.items.tlog +82 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.command.1.tlog +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.read.1.tlog +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.write.1.tlog +2 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/IPhreeqc.lastbuildstate +2 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib-link.read.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib-link.write.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib.command.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqcLib.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc_interface_F.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ISolution.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ISolutionComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Keywords.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/KineticsComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/NameDouble.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/NumKeyword.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PBasic.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_base.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_io.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_io_output.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PPassemblage.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PPassemblageComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Parser.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Phreeqc.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Pressure.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Reaction.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ReadClass.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SS.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SSassemblage.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SScomp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SelectedOutput.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Serializer.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Solution.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SolutionIsotope.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/StorageBin.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/StorageBinList.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Surface.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SurfaceCharge.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SurfaceComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/System.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Temperature.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Use.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/UserPunch.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Utils.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Var.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/advection.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/basicsubs.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cl1.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cvdense.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cvode.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cxxKinetics.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cxxMix.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/dense.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/dumper.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/input.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/integrate.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/isotopes.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/kinetics.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/model.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/pitzer.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/pitzer_structures.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/prep.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/ar-lib +270 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/config.guess +1441 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBin.h +141 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.cpp +358 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.h +81 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.cxx +837 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.h +108 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.cxx +617 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.h +137 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.cxx +509 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.h +70 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.cxx +103 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.h +89 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.cxx +423 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.h +42 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.cpp +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.h +159 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.cpp +32 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.h +39 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ZedGraph.dll +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/advection.cpp +140 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/basicsubs.cpp +4333 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cl1.cpp +881 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.cxx +117 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.h +48 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_exports.h +20 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.cpp +914 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.h +207 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.cxx +1331 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.h +310 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.cxx +263 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.h +29 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/phrqtype.h +18 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.cpp +566 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.h +267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.cpp +3939 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.h +940 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.cxx +617 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.h +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.cxx +154 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.h +58 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.cpp +175 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.h +341 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.cpp +277 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.h +60 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/gases.cpp +748 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/global_structures.h +1672 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/input.cpp +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/integrate.cpp +1219 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/inverse.cpp +5135 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/isotopes.cpp +1813 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/kinetics.cpp +3180 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/mainsubs.cpp +2320 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/model.cpp +5843 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.cpp +272 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.h +485 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.cpp +1032 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.h +369 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/parse.cpp +1044 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.cpp +316 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.h +47 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer.cpp +2709 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer_structures.cpp +225 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/prep.cpp +6267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/print.cpp +3673 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/read.cpp +10245 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/readtr.cpp +1495 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.cpp +158 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.h +33 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sit.cpp +1684 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.cpp +324 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.h +261 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/spread.cpp +1309 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/step.cpp +1566 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/structures.cpp +3381 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.cpp +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.h +162 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialstypes.h +183 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tally.cpp +1288 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tidy.cpp +5600 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/transport.cpp +6403 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/utilities.cpp +1339 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/thread.h +64 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/CMakeLists.txt +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.am +45 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.in +1128 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/ex2.in +26 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main.f90 +31 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main77.f +6 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main_fortran.cxx +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/phreeqc.dat.in +1556 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_c.c +148 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_cxx.cxx +152 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_f90.F90 +328 -0
- pyEQL/phreeqc/iphreeqc_wrapper.cpp +75 -0
- pyEQL/phreeqc/solution.py +74 -0
- pyEQL/phreeqc/var.py +50 -0
- pyEQL/presets/Ringers lactate.yaml +20 -0
- pyEQL/presets/__init__.py +17 -0
- pyEQL/presets/normal saline.yaml +17 -0
- pyEQL/presets/rainwater.yaml +17 -0
- pyEQL/presets/seawater.yaml +29 -0
- pyEQL/presets/urine.yaml +26 -0
- pyEQL/presets/wastewater.yaml +21 -0
- pyEQL/py.typed +0 -0
- pyEQL/salt_ion_match.py +112 -0
- pyEQL/solute.py +163 -0
- pyEQL/solution.py +2714 -0
- pyEQL/utils.py +237 -0
- pyeql-1.4.0rc9.dist-info/METADATA +130 -0
- pyeql-1.4.0rc9.dist-info/RECORD +519 -0
- pyeql-1.4.0rc9.dist-info/WHEEL +5 -0
- pyeql-1.4.0rc9.dist-info/licenses/AUTHORS.md +21 -0
- pyeql-1.4.0rc9.dist-info/licenses/LICENSE.txt +20 -0
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#include "Phreeqc.h"
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#include "phqalloc.h"
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#include "Utils.h"
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#include "NameDouble.h"
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#include "PBasic.h"
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#include "Exchange.h"
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#include "GasPhase.h"
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#include "PPassemblage.h"
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#include "SSassemblage.h"
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#include "cxxKinetics.h"
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#include "Solution.h"
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#include "Parser.h"
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#if defined(_MSC_VER) && (_MSC_VER <= 1400) // VS2005
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# define nullptr NULL
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#endif
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#if __cplusplus < 201103L // Check if C++ standard is pre-C++11
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# ifndef nullptr
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# define nullptr NULL
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# endif
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#endif
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#if defined(PHREEQCI_GUI)
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#ifdef _DEBUG
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#define new DEBUG_NEW
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#undef THIS_FILE
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static char THIS_FILE[] = __FILE__;
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#endif
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#endif
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/* ---------------------------------------------------------------------- */
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LDBLE Phreeqc::
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activity(const char *species_name)
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/* ---------------------------------------------------------------------- */
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{
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class species *s_ptr;
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LDBLE a;
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s_ptr = s_search(species_name);
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if (s_ptr == s_h2o)
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{
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a = pow((LDBLE) 10., s_h2o->la);
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}
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else if (s_ptr == s_eminus)
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{
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a = pow((LDBLE) 10., s_eminus->la);
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}
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else if (s_ptr == NULL || s_ptr->in == FALSE)
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{
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a = 1e-99;
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}
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else
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{
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a = pow((LDBLE) 10., s_ptr->lm + s_ptr->lg);
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}
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return (a);
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}
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/* ---------------------------------------------------------------------- */
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LDBLE Phreeqc::
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activity_coefficient(const char *species_name)
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/* ---------------------------------------------------------------------- */
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{
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class species *s_ptr;
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LDBLE g, dum = 0.0;
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s_ptr = s_search(species_name);
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if (s_ptr != NULL && s_ptr->in != FALSE && ((s_ptr->type < EMINUS) || (s_ptr->type == EX) || (s_ptr->type == SURF)))
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{
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if (s_ptr->type == EX && s_ptr->equiv && s_ptr->alk)
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dum = log10(s_ptr->equiv / s_ptr->alk);
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g = pow((LDBLE) 10., s_ptr->lg - dum);
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}
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else
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{
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g = 0;
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}
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return (g);
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}
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/* ---------------------------------------------------------------------- */
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LDBLE Phreeqc::
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log_activity_coefficient(const char *species_name)
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/* ---------------------------------------------------------------------- */
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{
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class species *s_ptr;
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LDBLE g, dum = 0.0;
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s_ptr = s_search(species_name);
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if (s_ptr != NULL && s_ptr->in != FALSE && ((s_ptr->type < EMINUS) || (s_ptr->type == EX) || (s_ptr->type == SURF)))
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{
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94
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if (s_ptr->type == EX && s_ptr->equiv && s_ptr->alk)
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dum = log10(s_ptr->equiv / s_ptr->alk);
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g = s_ptr->lg - dum;
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}
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else
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{
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g = 0;
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}
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return (g);
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}
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/* ---------------------------------------------------------------------- */
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LDBLE Phreeqc::
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aqueous_vm(const char *species_name)
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/* ---------------------------------------------------------------------- */
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{
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class species *s_ptr;
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LDBLE g;
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s_ptr = s_search(species_name);
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if (s_ptr != NULL && s_ptr->in != FALSE && s_ptr->type < EMINUS)
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{
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g = s_ptr->logk[vm_tc];
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}
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else
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{
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g = 0;
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}
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return (g);
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}
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124
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/* ---------------------------------------------------------------------- */
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125
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LDBLE Phreeqc::
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126
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phase_vm(const char *phase_name)
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/* ---------------------------------------------------------------------- */
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128
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{
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class phase *phase_ptr;
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int l;
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LDBLE g;
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phase_ptr = phase_bsearch(phase_name, &l, FALSE);
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if (phase_ptr == NULL)
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{
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g = 0.0;
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137
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}
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else
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{
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g = phase_ptr->logk[vm0];
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}
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return (g);
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143
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}
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144
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/* ---------------------------------------------------------------------- */
|
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145
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+
LDBLE Phreeqc::
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146
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sa_declercq(double sa_type, double Sa, double d, double m, double m0, double gfw)
|
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147
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+
/* ---------------------------------------------------------------------- */
|
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148
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+
{
|
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149
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+
if (sa_type == 0)
|
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150
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{
|
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151
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// surface-area-calculation-Fixed_Surface
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152
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return Sa;
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153
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}
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154
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+
else if (sa_type == 1)
|
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155
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// surface-area-calculation-Square
|
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156
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+
{
|
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157
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+
double mass0 = m0 * gfw;
|
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158
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double V0 = mass0 / d;
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159
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double St0 = mass0 * Sa; // total surface
|
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160
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double a0 = pow(V0, 1.0/3.0); // side length
|
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161
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double Sp0 = 6.0 * a0*a0; // surface particle
|
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162
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+
double np = St0 / Sp0; // number of particles
|
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163
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+
double RATS = Sa / St0;
|
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164
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+
double mass = m * gfw;
|
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165
|
+
double V = mass / d;
|
|
166
|
+
double a = pow(V, 1.0/3.0);
|
|
167
|
+
double St = 6.0 * a*a*np;
|
|
168
|
+
return St * RATS; // total current surface
|
|
169
|
+
}
|
|
170
|
+
else if (sa_type == 2)
|
|
171
|
+
{
|
|
172
|
+
//double pi = 3.14159265359;
|
|
173
|
+
double mass0 = m0 * gfw;
|
|
174
|
+
double V0 = mass0 / d; // volume
|
|
175
|
+
double St0 = mass0 * Sa; // total surface
|
|
176
|
+
double a0 = pow(3.0 * V0/(4.0 * pi), 1.0/3.0); // ((3*V0)/(4 * 3.14159265359))^(1/3)
|
|
177
|
+
double Sp0 = (4.0 * pi) * a0 * a0; // surface particle
|
|
178
|
+
double np = St0 / Sp0; // number of particles
|
|
179
|
+
double RATS = Sa / St0;
|
|
180
|
+
|
|
181
|
+
double mass = m * gfw;
|
|
182
|
+
double V = mass / d;
|
|
183
|
+
double a = pow(3.0 * V/(4.0 * pi), 1.0/3.0); //((3*V)/(4 * 3.14159265359))^(1/3)
|
|
184
|
+
double St = 4.0 * pi * a * a * np;
|
|
185
|
+
return St * RATS; // total current surface
|
|
186
|
+
}
|
|
187
|
+
error_string = sformatf( "Unknown surface area type in SA_DECLERCQ %d.", (int) sa_type);
|
|
188
|
+
error_msg(error_string, CONTINUE);
|
|
189
|
+
input_error++;
|
|
190
|
+
return (MISSING);
|
|
191
|
+
}
|
|
192
|
+
|
|
193
|
+
/* ---------------------------------------------------------------------- */
|
|
194
|
+
LDBLE Phreeqc::
|
|
195
|
+
diff_c(const char *species_name)
|
|
196
|
+
/* ---------------------------------------------------------------------- */
|
|
197
|
+
{
|
|
198
|
+
class species *s_ptr;
|
|
199
|
+
LDBLE Dw;
|
|
200
|
+
|
|
201
|
+
s_ptr = s_search(species_name);
|
|
202
|
+
if (s_ptr == NULL)
|
|
203
|
+
return(0);
|
|
204
|
+
if ((Dw = s_ptr->dw) == 0)
|
|
205
|
+
return(0);
|
|
206
|
+
if (correct_Dw)
|
|
207
|
+
{
|
|
208
|
+
calc_SC();
|
|
209
|
+
Dw = s_ptr->dw_corr;
|
|
210
|
+
}
|
|
211
|
+
else
|
|
212
|
+
{
|
|
213
|
+
if (tk_x != 298.15 && s_ptr->dw_t)
|
|
214
|
+
Dw *= exp(s_ptr->dw_t / tk_x - s_ptr->dw_t / 298.15);
|
|
215
|
+
|
|
216
|
+
Dw *= viscos_0_25 / viscos_0;
|
|
217
|
+
}
|
|
218
|
+
if (s_ptr->dw_a_v_dif && print_viscosity)
|
|
219
|
+
{
|
|
220
|
+
viscosity(nullptr);
|
|
221
|
+
Dw *= pow(viscos_0 / viscos, s_ptr->dw_a_v_dif);
|
|
222
|
+
}
|
|
223
|
+
return Dw;
|
|
224
|
+
}
|
|
225
|
+
|
|
226
|
+
/* ---------------------------------------------------------------------- */
|
|
227
|
+
LDBLE Phreeqc::
|
|
228
|
+
setdiff_c(const char *species_name, double d, double d_v_d)
|
|
229
|
+
/* ---------------------------------------------------------------------- */
|
|
230
|
+
{
|
|
231
|
+
class species *s_ptr;
|
|
232
|
+
LDBLE Dw;
|
|
233
|
+
|
|
234
|
+
s_ptr = s_search(species_name);
|
|
235
|
+
if (s_ptr == NULL)
|
|
236
|
+
return(0);
|
|
237
|
+
Dw = s_ptr->dw = d;
|
|
238
|
+
s_ptr->dw_a_v_dif = d_v_d;
|
|
239
|
+
if (correct_Dw)
|
|
240
|
+
{
|
|
241
|
+
calc_SC();
|
|
242
|
+
Dw = s_ptr->dw_corr;
|
|
243
|
+
}
|
|
244
|
+
else
|
|
245
|
+
{
|
|
246
|
+
if (tk_x != 298.15 && s_ptr->dw_t)
|
|
247
|
+
Dw *= exp(s_ptr->dw_t / tk_x - s_ptr->dw_t / 298.15);
|
|
248
|
+
|
|
249
|
+
Dw *= viscos_0_25 / viscos_0;
|
|
250
|
+
}
|
|
251
|
+
if (d_v_d && print_viscosity)
|
|
252
|
+
{
|
|
253
|
+
viscosity(nullptr);
|
|
254
|
+
Dw *= pow(viscos_0 / viscos, s_ptr->dw_a_v_dif);
|
|
255
|
+
}
|
|
256
|
+
return Dw;
|
|
257
|
+
}
|
|
258
|
+
/* ---------------------------------------------------------------------- */
|
|
259
|
+
LDBLE Phreeqc::
|
|
260
|
+
calc_SC(void)
|
|
261
|
+
/* ---------------------------------------------------------------------- */
|
|
262
|
+
{
|
|
263
|
+
class species *s_ptr;
|
|
264
|
+
int i;
|
|
265
|
+
LDBLE ka, l_z, Dw, ff, sqrt_mu, a, a2, a3, av, v_Cl = 1;
|
|
266
|
+
SC = 0;
|
|
267
|
+
sqrt_mu = sqrt(mu_x);
|
|
268
|
+
bool Falk = false;
|
|
269
|
+
s_ptr = s_search("H+");
|
|
270
|
+
if (s_ptr == NULL)
|
|
271
|
+
return(0);
|
|
272
|
+
else if (s_ptr->dw_a3 > 24) Falk = true;
|
|
273
|
+
|
|
274
|
+
//LDBLE ta1, ta2, ta3, ta4;
|
|
275
|
+
//for (i = 0; i < (int)this->s_x.size(); i++)
|
|
276
|
+
//{
|
|
277
|
+
// // ** for optimizing, get numbers from -analyt for H+ = H+...
|
|
278
|
+
// if (!strcmp(s_x[i]->name, "H+"))
|
|
279
|
+
// {
|
|
280
|
+
// ta1 = s_x[i]->logk[2] * 1e15;
|
|
281
|
+
// ta2 = s_x[i]->logk[3] * 1e15;
|
|
282
|
+
// ta3 = s_x[i]->logk[4] * 1e15;
|
|
283
|
+
// ta4 = s_x[i]->logk[5] * 1e15;
|
|
284
|
+
// break;
|
|
285
|
+
// }
|
|
286
|
+
//}
|
|
287
|
+
av = 0;
|
|
288
|
+
if (print_viscosity)
|
|
289
|
+
viscosity(nullptr);
|
|
290
|
+
if (!Falk)
|
|
291
|
+
{
|
|
292
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
293
|
+
{
|
|
294
|
+
if (s_x[i]->type != AQ && s_x[i]->type != HPLUS)
|
|
295
|
+
continue;
|
|
296
|
+
if ((Dw = s_x[i]->dw) == 0)
|
|
297
|
+
{
|
|
298
|
+
if (correct_Dw)
|
|
299
|
+
Dw = default_Dw;
|
|
300
|
+
else
|
|
301
|
+
{
|
|
302
|
+
s_x[i]->dw_corr = 0;
|
|
303
|
+
continue;
|
|
304
|
+
}
|
|
305
|
+
}
|
|
306
|
+
if (s_x[i]->lm < min_dif_LM)
|
|
307
|
+
continue;
|
|
308
|
+
if (tk_x != 298.15)
|
|
309
|
+
{
|
|
310
|
+
if (s_x[i]->dw_t)
|
|
311
|
+
Dw *= exp(s_x[i]->dw_t / tk_x - s_x[i]->dw_t / 298.15);
|
|
312
|
+
//else
|
|
313
|
+
//{
|
|
314
|
+
// Dw *= exp(ta1 / tk_x - ta1 / 298.15);
|
|
315
|
+
//}
|
|
316
|
+
}
|
|
317
|
+
// correct for temperature dependent viscosity of pure water...
|
|
318
|
+
Dw *= viscos_0_25 / viscos_0;
|
|
319
|
+
s_x[i]->dw_corr = Dw;
|
|
320
|
+
if ((l_z = fabs(s_x[i]->z)) == 0)
|
|
321
|
+
{
|
|
322
|
+
//l_z = 1; // only a 1st approximation for correct_Dw in electrical field
|
|
323
|
+
continue;
|
|
324
|
+
}
|
|
325
|
+
else
|
|
326
|
+
{
|
|
327
|
+
s_ptr = s_x[i];
|
|
328
|
+
if (print_viscosity)
|
|
329
|
+
{
|
|
330
|
+
a = (s_ptr->dw_a ? s_ptr->dw_a : 1.6);
|
|
331
|
+
a2 = (s_ptr->dw_a2 ? s_ptr->dw_a2 : 4.73);
|
|
332
|
+
av = (s_ptr->dw_a_visc ? pow((viscos_0 / viscos), s_ptr->dw_a_visc) : 1);
|
|
333
|
+
a3 = (s_ptr->dw_a3 ? pow(mu_x, s_ptr->dw_a3) : s_ptr->dw_a_visc ? 1 : pow(mu_x, 0.75));
|
|
334
|
+
}
|
|
335
|
+
else
|
|
336
|
+
{
|
|
337
|
+
a = (s_ptr->dw_a ? s_ptr->dw_a : 1.6);
|
|
338
|
+
a2 = (s_ptr->dw_a2 ? s_ptr->dw_a2 : 4.73);
|
|
339
|
+
av = 1.0;
|
|
340
|
+
a3 = (s_ptr->dw_a3 ? pow(mu_x, s_ptr->dw_a3) : pow(mu_x, 0.75));
|
|
341
|
+
}
|
|
342
|
+
ka = DH_B * a2 * sqrt_mu / (1 + a3);
|
|
343
|
+
ff = av * exp(-a * DH_A * l_z * sqrt_mu / (1 + ka));
|
|
344
|
+
}
|
|
345
|
+
|
|
346
|
+
Dw *= ff;
|
|
347
|
+
if (correct_Dw)
|
|
348
|
+
s_x[i]->dw_corr = Dw;
|
|
349
|
+
s_x[i]->dw_t_SC = s_x[i]->moles / mass_water_aq_x * l_z * l_z * Dw;
|
|
350
|
+
SC += s_x[i]->dw_t_SC;
|
|
351
|
+
}
|
|
352
|
+
SC *= 1e7 * F_C_MOL * F_C_MOL / (R_KJ_DEG_MOL * 298150.0);
|
|
353
|
+
return (SC);
|
|
354
|
+
}
|
|
355
|
+
else
|
|
356
|
+
{
|
|
357
|
+
/* the phreeqc equation from Appelo, 2017, CCR 101, 102 with viscosity correction, e.g. for SO4-2 and its complexes:
|
|
358
|
+
Dw dw_t a a2 visc -5< a3 <5
|
|
359
|
+
-dw 1.07e-9 236 0.7281 3.452 -0.1515 -3.043 # obsolete
|
|
360
|
+
or
|
|
361
|
+
Debye-Onsager with (1 + ka)^2 in the denominator,
|
|
362
|
+
for the individual ions according to their contribution to mu, with sqrt charge multiplier for B2 and
|
|
363
|
+
a in ka corrected by volume (or mu^a2, if a3 = -10), and * (viscos_0 / viscos)^av
|
|
364
|
+
Dw dw_t a a2 visc a3 = (0) or >5
|
|
365
|
+
-dw 1.03e-9 -14 4.03 0.8341 1.679 # Li+, ka = DH_B * a * (1 + (vm - v0))^a2 * mu^0.5
|
|
366
|
+
*/
|
|
367
|
+
LDBLE q, sqrt_q, B1, B2, m_plus, m_min, eq_plus, eq_min, eq_dw_plus, eq_dw_min, z_plus, z_min, t1, Dw_SC;
|
|
368
|
+
|
|
369
|
+
m_plus = m_min = eq_plus = eq_min = eq_dw_plus = eq_dw_min = z_plus = z_min = 0;
|
|
370
|
+
SC = 0;
|
|
371
|
+
LDBLE eps_c = eps_r; // Cl concentration corrected eps_r
|
|
372
|
+
// average z and Dw for transport numbers t1_0 and t2_0 at zero conc's, and q of the solution...
|
|
373
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
374
|
+
{
|
|
375
|
+
if (s_x[i]->type != AQ && s_x[i]->type != HPLUS)
|
|
376
|
+
continue;
|
|
377
|
+
if (s_x[i]->lm < min_dif_LM)
|
|
378
|
+
continue;
|
|
379
|
+
if ((Dw = s_x[i]->dw) == 0)
|
|
380
|
+
{
|
|
381
|
+
if (correct_Dw)
|
|
382
|
+
Dw = default_Dw; // or charge based...Dw = l_z > 0 ? 1.6e-9 / l_z : 2e-9 / -l_z;
|
|
383
|
+
else
|
|
384
|
+
{
|
|
385
|
+
s_x[i]->dw_corr = 0;
|
|
386
|
+
continue;
|
|
387
|
+
}
|
|
388
|
+
}
|
|
389
|
+
if (tk_x != 298.15 && s_x[i]->dw_t)
|
|
390
|
+
Dw *= exp(s_x[i]->dw_t / tk_x - s_x[i]->dw_t / 298.15);
|
|
391
|
+
Dw *= viscos_0_25 / viscos_0;
|
|
392
|
+
s_x[i]->dw_corr = Dw;
|
|
393
|
+
|
|
394
|
+
if ((l_z = s_x[i]->z) == 0)
|
|
395
|
+
continue;
|
|
396
|
+
|
|
397
|
+
if (l_z > 0)
|
|
398
|
+
{
|
|
399
|
+
m_plus += s_x[i]->moles;
|
|
400
|
+
a = s_x[i]->moles * l_z;
|
|
401
|
+
eq_plus += a;
|
|
402
|
+
eq_dw_plus += a * Dw;
|
|
403
|
+
}
|
|
404
|
+
else
|
|
405
|
+
{
|
|
406
|
+
m_min += s_x[i]->moles;
|
|
407
|
+
a = s_x[i]->moles * l_z;
|
|
408
|
+
eq_min -= a;
|
|
409
|
+
eq_dw_min -= a * Dw;
|
|
410
|
+
}
|
|
411
|
+
}
|
|
412
|
+
// q = z1 * z2 / ((z2 * t1_0 + z1 * t2_0) * (z1 + z2));
|
|
413
|
+
// z1 = z_plus, z2 = z_min, t1_0 = (eq_dw_plus / m_plus) / (eq_dw_plus / m_plus + eq_dw_min / m_min)
|
|
414
|
+
//a = (eq_plus - eq_min) / 2;
|
|
415
|
+
//eq_min += a;
|
|
416
|
+
//eq_plus -= a;
|
|
417
|
+
z_plus = eq_plus / m_plus; // |av_z1|
|
|
418
|
+
z_min = eq_min / m_min; // |av_z2|
|
|
419
|
+
t1 = (eq_dw_plus / m_plus) / (eq_dw_plus / m_plus + eq_dw_min / m_min);
|
|
420
|
+
q = 1 / ((t1 / z_plus + (1 - t1) / z_min) * (z_min + z_plus));
|
|
421
|
+
sqrt_q = sqrt(q);
|
|
422
|
+
|
|
423
|
+
// B1 = relaxation, B2 = electrophoresis in ll = (ll0 - B2 * sqrt(mu) / f2(1 + ka)) * (1 - B1 * sqrt(mu) / f1(1 + ka))
|
|
424
|
+
a = 1.60218e-19 * 1.60218e-19 / (6 * pi);
|
|
425
|
+
B1 = a / (2 * 8.8542e-12 * eps_r * 1.38066e-23 * tk_x) * q / (1 + sqrt_q) * DH_B * 1e10 * z_plus * z_min; // DH_B is per Angstrom (*1e10)
|
|
426
|
+
B2 = a * AVOGADRO / viscos_0 * DH_B * 1e17; // DH_B per Angstrom (*1e10), viscos in mPa.s (*1e3), B2 in cm2 (*1e4)
|
|
427
|
+
//B1 = a / (2 * 8.8542e-12 * eps_c * 1.38066e-23 * tk_x) * q / (1 + sqrt_q) * DH_B * 1e10 * z_plus * z_min; // DH_B is per Angstrom (*1e10)
|
|
428
|
+
//B2 = a * AVOGADRO / viscos * DH_B * 1e17; // DH_B per Angstrom (*1e10), viscos in mPa.s (*1e3), B2 in cm2 (*1e4)
|
|
429
|
+
|
|
430
|
+
LDBLE mu_plus, mu_min, lz, ll_SC, v0;
|
|
431
|
+
// the + and - contributions to mu, assuming -2, -1, 1, 2 charge numbers...
|
|
432
|
+
mu_min = 3 * m_min * (z_min - 1) + m_min;
|
|
433
|
+
mu_plus = 3 * m_plus * (z_plus - 1) + m_plus;
|
|
434
|
+
|
|
435
|
+
Dw_SC = 1e4 * F_C_MOL * F_C_MOL / (R_KJ_DEG_MOL * 298.15e3); // for recalculating Dw to ll0
|
|
436
|
+
t1 = calc_solution_volume();
|
|
437
|
+
ll_SC = 0.5e3 * (eq_plus + eq_min) / t1 * mass_water_aq_x / t1; // recalculates ll to SC in uS/cm, with mu in mol/kgw
|
|
438
|
+
|
|
439
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
440
|
+
{
|
|
441
|
+
if (s_x[i]->type != AQ && s_x[i]->type != HPLUS)
|
|
442
|
+
continue;
|
|
443
|
+
if ((lz = s_x[i]->z) == 0)
|
|
444
|
+
continue;
|
|
445
|
+
if (s_x[i]->lm < min_dif_LM)
|
|
446
|
+
continue;
|
|
447
|
+
if ((Dw = s_x[i]->dw_corr) == 0)
|
|
448
|
+
continue;
|
|
449
|
+
l_z = fabs(lz);
|
|
450
|
+
a3 = s_x[i]->dw_a3;
|
|
451
|
+
if (a3 != 0 && a3 > -5.01 && a3 < 4.99)
|
|
452
|
+
{
|
|
453
|
+
// with the phreeqc equation...
|
|
454
|
+
s_ptr = s_x[i];
|
|
455
|
+
a = (s_ptr->dw_a ? s_ptr->dw_a : 1.6);
|
|
456
|
+
a2 = (s_ptr->dw_a2 ? s_ptr->dw_a2 : 4.73);
|
|
457
|
+
a3 = pow(mu_x, a3);
|
|
458
|
+
if (print_viscosity)
|
|
459
|
+
av = (s_ptr->dw_a_visc ? pow((viscos_0 / viscos), s_ptr->dw_a_visc) : 1);
|
|
460
|
+
else
|
|
461
|
+
av = 1.0;
|
|
462
|
+
ka = DH_B * a2 * sqrt_mu / (1 + a3);
|
|
463
|
+
ff = av * exp(-a * DH_A * l_z * sqrt_mu / (1 + ka));
|
|
464
|
+
|
|
465
|
+
Dw *= ff;
|
|
466
|
+
if (correct_Dw)
|
|
467
|
+
s_x[i]->dw_corr = Dw;
|
|
468
|
+
s_x[i]->dw_t_SC = s_x[i]->moles / mass_water_aq_x * l_z * l_z * Dw;
|
|
469
|
+
SC += s_x[i]->dw_t_SC * 1e3 * Dw_SC;
|
|
470
|
+
}
|
|
471
|
+
else
|
|
472
|
+
{
|
|
473
|
+
// Falkenhagen...
|
|
474
|
+
if (!a3) a3 = 10;
|
|
475
|
+
a = (s_x[i]->dw_a ? s_x[i]->dw_a : 3.5);
|
|
476
|
+
a2 = (s_x[i]->dw_a2);// ? s_x[i]->dw_a2 : 0.5);
|
|
477
|
+
av = (s_x[i]->dw_a_visc);// ? s_x[i]->dw_a_visc : 0.8);
|
|
478
|
+
if (lz < -0.5/* && lz > -1.5*/)
|
|
479
|
+
{
|
|
480
|
+
// Mg and Ca give different numbers than H+, Li+, Na+ and K for anions...
|
|
481
|
+
t1 = (z_plus - 1);
|
|
482
|
+
//a -= a3 / 1000 * l_z * t1;
|
|
483
|
+
//a2 += a3 / 1000 * l_z * t1;
|
|
484
|
+
a -= 0.126 * l_z * t1;
|
|
485
|
+
a2 += 0.126 * l_z * t1;
|
|
486
|
+
//av += 0 * t1;
|
|
487
|
+
}
|
|
488
|
+
Dw *= Dw_SC * l_z;
|
|
489
|
+
if (!a2)
|
|
490
|
+
t1 = 1;
|
|
491
|
+
else if (!strcmp(s_x[i]->name, "H+"))
|
|
492
|
+
t1 = pow(1 + mu_x, a2);
|
|
493
|
+
else
|
|
494
|
+
{
|
|
495
|
+
v0 = calc_vm0(s_x[i]->name, tc_x, 1, 0);
|
|
496
|
+
t1 = 1 + (s_x[i]->rxn_x.logk[vm_tc] - v0);
|
|
497
|
+
if (a2 && t1 > 0)
|
|
498
|
+
t1 = pow(t1, a2);
|
|
499
|
+
//t1 = (t1 <= a3 / 10 ? a3 / 10 : t1);
|
|
500
|
+
t1 = (t1 < 1 ? 1 : t1);
|
|
501
|
+
}
|
|
502
|
+
if (a3 >= 5)
|
|
503
|
+
// with the vm correction of a in ka..
|
|
504
|
+
ka = DH_B * a * t1 * sqrt_mu;
|
|
505
|
+
else
|
|
506
|
+
// with a mu^dw_a2 correction of a..
|
|
507
|
+
ka = DH_B * a * pow((double)mu_x, a2);
|
|
508
|
+
|
|
509
|
+
t1 = (Dw - B2 * l_z * sqrt_mu / (1 + ka)) *
|
|
510
|
+
(1 - B1 * sqrt_mu / ((1 + ka) * (1 + ka)));// +ka * ka / 6))); // S.cm2/eq / (kgw/L)
|
|
511
|
+
//t1 = (Dw - B2 * l_z * sqrt_mu / (1 + ka)) *
|
|
512
|
+
// (1 - B1 * sqrt_mu / ((1 + ka) *(1 + ka * sqrt_q + ka * ka / 6))); // S.cm2/eq / (kgw/L)
|
|
513
|
+
if (av)
|
|
514
|
+
t1 *= pow(viscos_0 / viscos, av);
|
|
515
|
+
if (correct_Dw)
|
|
516
|
+
s_x[i]->dw_corr *= t1 / Dw * pow(mass_water_aq_x / calc_solution_volume(), 2);
|
|
517
|
+
|
|
518
|
+
// fractional contribution in mu, and correct for charge imbalance
|
|
519
|
+
a2 = 2 / (eq_plus + eq_min);
|
|
520
|
+
a = (lz > 0 ? mu_plus / (eq_plus * a2) : mu_min / (eq_min * a2));
|
|
521
|
+
t1 *= s_x[i]->moles * l_z * l_z / a;
|
|
522
|
+
t1 *= ll_SC;
|
|
523
|
+
s_x[i]->dw_t_SC = t1 / (1e3 * Dw_SC);
|
|
524
|
+
SC += t1;
|
|
525
|
+
}
|
|
526
|
+
}
|
|
527
|
+
return SC;
|
|
528
|
+
}
|
|
529
|
+
}
|
|
530
|
+
|
|
531
|
+
/* VP: Density Start */
|
|
532
|
+
/* ---------------------------------------------------------------------- */
|
|
533
|
+
LDBLE Phreeqc::
|
|
534
|
+
calc_dens(void)
|
|
535
|
+
/* ---------------------------------------------------------------------- */
|
|
536
|
+
{
|
|
537
|
+
/*
|
|
538
|
+
* Calculates density based on the formulas and parameters from Millero,
|
|
539
|
+
* 2000.
|
|
540
|
+
*
|
|
541
|
+
* Millero, F.J. (2000) The equation of state of lakes. Aquatic geochemistry
|
|
542
|
+
* volume 6, pages 1-17
|
|
543
|
+
*/
|
|
544
|
+
int i;
|
|
545
|
+
LDBLE M_T, /*rho_new,*/ gfw;
|
|
546
|
+
/* 2 options: original VP, assign the volumes of species with zero molar volume to their master species,
|
|
547
|
+
but this doubles counts of complexes with -Vm defined. And, cation-OH and H-anion
|
|
548
|
+
complexes are counted once. Also, must add H+ and OH-... */
|
|
549
|
+
//class species *s_ptr;
|
|
550
|
+
|
|
551
|
+
//V_solutes = M_T = 0.0;
|
|
552
|
+
//for (i = 0; i < count_species_list; i++)
|
|
553
|
+
//{
|
|
554
|
+
// if (species_list[i].s->type != AQ && species_list[i].s->type != HPLUS)
|
|
555
|
+
// continue;
|
|
556
|
+
|
|
557
|
+
// //if (species_list[i].master_s->secondary != NULL)
|
|
558
|
+
// // gfw = species_list[i].master_s->secondary->gfw;
|
|
559
|
+
// //else
|
|
560
|
+
// // gfw = species_list[i].master_s->primary->gfw;
|
|
561
|
+
|
|
562
|
+
// /* OH-... */
|
|
563
|
+
// if (!strcmp(species_list[i].s->name, "OH-"))
|
|
564
|
+
// s_ptr = s_search("OH-");
|
|
565
|
+
// else if (species_list[i].s->logk[vm_tc] == 0)
|
|
566
|
+
// {
|
|
567
|
+
// s_ptr = species_list[i].master_s;
|
|
568
|
+
// if (s_ptr->secondary)
|
|
569
|
+
// gfw = s_ptr->secondary->gfw;
|
|
570
|
+
// else
|
|
571
|
+
// gfw = s_ptr->primary->gfw;
|
|
572
|
+
// }
|
|
573
|
+
// else
|
|
574
|
+
// {
|
|
575
|
+
// s_ptr = species_list[i].s;
|
|
576
|
+
// compute_gfw(species_list[i].s->name, &gfw);
|
|
577
|
+
// }
|
|
578
|
+
|
|
579
|
+
// /* Special case: CO3-2 species */
|
|
580
|
+
// if (strcmp(s_ptr->name, "CO3-2") == 0)
|
|
581
|
+
// {
|
|
582
|
+
// if (strstr(species_list[i].s->name, "HCO3") != NULL)
|
|
583
|
+
// {
|
|
584
|
+
// s_ptr = s_search("HCO3-");
|
|
585
|
+
// } else if (strstr(species_list[i].s->name, "CO3") != NULL)
|
|
586
|
+
// {
|
|
587
|
+
// compute_gfw("CO3-2", &gfw);
|
|
588
|
+
// }
|
|
589
|
+
// }
|
|
590
|
+
// if (!gfw || !strcmp(species_list[i].s->name, "CO2")) /* CO2, H+ and OH- */
|
|
591
|
+
// compute_gfw(species_list[i].s->name, &gfw);
|
|
592
|
+
|
|
593
|
+
// M_T += (species_list[i].s->moles * gfw);
|
|
594
|
+
// V_solutes += species_list[i].s->moles * s_ptr->logk[vm_tc];
|
|
595
|
+
//}
|
|
596
|
+
|
|
597
|
+
/* 2nd option, use species_x, vm = 0 for complexes with undefined volume... */
|
|
598
|
+
V_solutes = M_T = 0.0;
|
|
599
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
600
|
+
{
|
|
601
|
+
if (s_x[i]->type != AQ && s_x[i]->type != HPLUS)
|
|
602
|
+
continue;
|
|
603
|
+
|
|
604
|
+
//compute_gfw(s_x[i]->name, &gfw);
|
|
605
|
+
gfw = s_x[i]->gfw;
|
|
606
|
+
M_T += s_x[i]->moles * gfw;
|
|
607
|
+
V_solutes += s_x[i]->moles * s_x[i]->logk[vm_tc];
|
|
608
|
+
}
|
|
609
|
+
/* If pure water then return rho_0 */
|
|
610
|
+
density_x = rho_0;
|
|
611
|
+
if (M_T > 0.0)
|
|
612
|
+
{
|
|
613
|
+
density_x = rho_0 * (1e3 + M_T / mass_water_aq_x) / (rho_0 * V_solutes / mass_water_aq_x + 1e3);
|
|
614
|
+
}
|
|
615
|
+
solution_mass_x = 1e-3*(M_T + s_h2o->moles * s_h2o->gfw);
|
|
616
|
+
solution_volume_x = solution_mass_x / density_x;
|
|
617
|
+
return density_x;
|
|
618
|
+
//M_T /= 1e3;
|
|
619
|
+
//solution_mass = mass_water_aq_x + M_T;
|
|
620
|
+
//V_solutes = M_T - rho_0 * V_solutes / 1e3;
|
|
621
|
+
|
|
622
|
+
//rho_new = halve(f_rho, 0.5, 2.0, 1e-7);
|
|
623
|
+
//if (!PHR_ISFINITE(rho_new) || rho_new > 1.99999) rho_new = 1.99999;
|
|
624
|
+
|
|
625
|
+
//return rho_new;
|
|
626
|
+
}
|
|
627
|
+
/* VP: Density End */
|
|
628
|
+
/* DP: Function for interval halving */
|
|
629
|
+
#ifdef NOT_USED
|
|
630
|
+
LDBLE Phreeqc::
|
|
631
|
+
f_rho(LDBLE rho_old, void* cookie)
|
|
632
|
+
/* ---------------------------------------------------------------------- */
|
|
633
|
+
{
|
|
634
|
+
LDBLE rho = 1.0;
|
|
635
|
+
Phreeqc* pThis;
|
|
636
|
+
|
|
637
|
+
pThis = (Phreeqc*)cookie;
|
|
638
|
+
|
|
639
|
+
pThis->solution_volume = pThis->solution_mass / rho_old;
|
|
640
|
+
if (pThis->solution_volume != 0)
|
|
641
|
+
{
|
|
642
|
+
rho = pThis->V_solutes / pThis->solution_volume;
|
|
643
|
+
}
|
|
644
|
+
rho = rho + pThis->rho_0;
|
|
645
|
+
return (rho - rho_old);
|
|
646
|
+
}
|
|
647
|
+
#endif
|
|
648
|
+
#ifdef original
|
|
649
|
+
/* ---------------------------------------------------------------------- */
|
|
650
|
+
LDBLE Phreeqc::
|
|
651
|
+
calc_solution_volume(void)
|
|
652
|
+
/* ---------------------------------------------------------------------- */
|
|
653
|
+
{
|
|
654
|
+
/*
|
|
655
|
+
* Calculates solution volume based on sum of mass of element plus density
|
|
656
|
+
*/
|
|
657
|
+
LDBLE total_mass = 0;
|
|
658
|
+
LDBLE gfw;
|
|
659
|
+
//compute_gfw("H", &gfw);
|
|
660
|
+
gfw = s_hplus->primary->gfw;
|
|
661
|
+
total_mass = total_h_x * gfw;
|
|
662
|
+
//compute_gfw("O", &gfw);
|
|
663
|
+
gfw = s_h2o->primary->gfw;
|
|
664
|
+
total_mass += total_o_x * gfw;
|
|
665
|
+
|
|
666
|
+
for (int i = 0; i < (int)master.size(); i++)
|
|
667
|
+
{
|
|
668
|
+
if (master[i]->s->type != AQ) continue;
|
|
669
|
+
class master* master_ptr = master[i];
|
|
670
|
+
if (master_ptr->primary == TRUE && strcmp(master_ptr->elt->name, "Alkalinity"))
|
|
671
|
+
{
|
|
672
|
+
total_mass += master_ptr->total_primary * master_ptr->elt->gfw;
|
|
673
|
+
}
|
|
674
|
+
}
|
|
675
|
+
LDBLE rho = calc_dens();
|
|
676
|
+
LDBLE vol = 1e-3 * total_mass / rho;
|
|
677
|
+
return (vol);
|
|
678
|
+
}
|
|
679
|
+
#endif
|
|
680
|
+
/* ---------------------------------------------------------------------- */
|
|
681
|
+
LDBLE Phreeqc::
|
|
682
|
+
calc_solution_volume(void)
|
|
683
|
+
/* ---------------------------------------------------------------------- */
|
|
684
|
+
{
|
|
685
|
+
/*
|
|
686
|
+
* Calculates solution volume based on sum of mass of element plus density
|
|
687
|
+
*/
|
|
688
|
+
LDBLE rho = calc_dens();
|
|
689
|
+
LDBLE vol = solution_volume_x;
|
|
690
|
+
return (vol);
|
|
691
|
+
}
|
|
692
|
+
/* ---------------------------------------------------------------------- */
|
|
693
|
+
LDBLE Phreeqc::
|
|
694
|
+
calc_logk_n(const char* name)
|
|
695
|
+
/* ---------------------------------------------------------------------- */
|
|
696
|
+
{
|
|
697
|
+
char token[MAX_LENGTH];
|
|
698
|
+
int i;
|
|
699
|
+
LDBLE lk;
|
|
700
|
+
class logk* logk_ptr;
|
|
701
|
+
LDBLE l_logk[MAX_LOG_K_INDICES];
|
|
702
|
+
class name_coef add_logk;
|
|
703
|
+
std::vector<class name_coef> add_logk_v;
|
|
704
|
+
|
|
705
|
+
for (i = 0; i < MAX_LOG_K_INDICES; i++)
|
|
706
|
+
{
|
|
707
|
+
l_logk[i] = 0.0;
|
|
708
|
+
}
|
|
709
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
710
|
+
logk_ptr = logk_search(token);
|
|
711
|
+
if (logk_ptr != NULL)
|
|
712
|
+
{
|
|
713
|
+
add_logk.name = token;
|
|
714
|
+
add_logk.coef = 1.0;
|
|
715
|
+
add_logk_v.push_back(add_logk);
|
|
716
|
+
add_other_logk(l_logk, add_logk_v);
|
|
717
|
+
lk = k_calc(l_logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
718
|
+
return (lk);
|
|
719
|
+
}
|
|
720
|
+
return (-999.99);
|
|
721
|
+
}
|
|
722
|
+
|
|
723
|
+
/* ---------------------------------------------------------------------- */
|
|
724
|
+
LDBLE Phreeqc::
|
|
725
|
+
calc_logk_p(const char* name)
|
|
726
|
+
/* ---------------------------------------------------------------------- */
|
|
727
|
+
{
|
|
728
|
+
int i, j;
|
|
729
|
+
char token[MAX_LENGTH];
|
|
730
|
+
class phase* phase_ptr;
|
|
731
|
+
LDBLE lk = -999.9;
|
|
732
|
+
LDBLE l_logk[MAX_LOG_K_INDICES];
|
|
733
|
+
|
|
734
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
735
|
+
phase_ptr = phase_bsearch(token, &j, FALSE);
|
|
736
|
+
|
|
737
|
+
if (phase_ptr != NULL)
|
|
738
|
+
{
|
|
739
|
+
CReaction* reaction_ptr;
|
|
740
|
+
if (phase_ptr->replaced)
|
|
741
|
+
reaction_ptr = &phase_ptr->rxn_s;
|
|
742
|
+
else
|
|
743
|
+
reaction_ptr = &phase_ptr->rxn;
|
|
744
|
+
/*
|
|
745
|
+
* Print saturation index
|
|
746
|
+
*/
|
|
747
|
+
reaction_ptr->logk[delta_v] = calc_delta_v(*reaction_ptr, true) -
|
|
748
|
+
phase_ptr->logk[vm0];
|
|
749
|
+
if (reaction_ptr->logk[delta_v])
|
|
750
|
+
mu_terms_in_logk = true;
|
|
751
|
+
for (i = 0; i < MAX_LOG_K_INDICES; i++)
|
|
752
|
+
{
|
|
753
|
+
l_logk[i] = 0.0;
|
|
754
|
+
}
|
|
755
|
+
//lk = k_calc(reaction_ptr->logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
756
|
+
select_log_k_expression(reaction_ptr->logk, l_logk);
|
|
757
|
+
add_other_logk(l_logk, phase_ptr->add_logk);
|
|
758
|
+
lk = k_calc(l_logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
759
|
+
}
|
|
760
|
+
return (lk);
|
|
761
|
+
}
|
|
762
|
+
|
|
763
|
+
/* ---------------------------------------------------------------------- */
|
|
764
|
+
LDBLE Phreeqc::
|
|
765
|
+
calc_logk_s(const char* name)
|
|
766
|
+
/* ---------------------------------------------------------------------- */
|
|
767
|
+
{
|
|
768
|
+
int i;
|
|
769
|
+
char token[MAX_LENGTH];
|
|
770
|
+
class species* s_ptr;
|
|
771
|
+
LDBLE lk, l_logk[MAX_LOG_K_INDICES];
|
|
772
|
+
|
|
773
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
774
|
+
s_ptr = s_search(token);
|
|
775
|
+
if (s_ptr != NULL)
|
|
776
|
+
{
|
|
777
|
+
//if (s_ptr->logk[vm_tc])
|
|
778
|
+
/* calculate delta_v for the reaction... */
|
|
779
|
+
s_ptr->logk[delta_v] = calc_delta_v(*&s_ptr->rxn, false);
|
|
780
|
+
for (i = 0; i < MAX_LOG_K_INDICES; i++)
|
|
781
|
+
{
|
|
782
|
+
l_logk[i] = 0.0;
|
|
783
|
+
}
|
|
784
|
+
select_log_k_expression(s_ptr->logk, l_logk);
|
|
785
|
+
mu_terms_in_logk = true;
|
|
786
|
+
add_other_logk(l_logk, s_ptr->add_logk);
|
|
787
|
+
lk = k_calc(l_logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
788
|
+
return (lk);
|
|
789
|
+
}
|
|
790
|
+
return (-999.99);
|
|
791
|
+
}
|
|
792
|
+
/* ---------------------------------------------------------------------- */
|
|
793
|
+
LDBLE Phreeqc::
|
|
794
|
+
dh_a0(const char* name)
|
|
795
|
+
/* ---------------------------------------------------------------------- */
|
|
796
|
+
{
|
|
797
|
+
char token[MAX_LENGTH];
|
|
798
|
+
class species* s_ptr;
|
|
799
|
+
double a = -999.99;
|
|
800
|
+
|
|
801
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
802
|
+
s_ptr = s_search(token);
|
|
803
|
+
if (s_ptr != NULL)
|
|
804
|
+
{
|
|
805
|
+
a = s_ptr->dha;
|
|
806
|
+
}
|
|
807
|
+
return (a);
|
|
808
|
+
}
|
|
809
|
+
/* ---------------------------------------------------------------------- */
|
|
810
|
+
LDBLE Phreeqc::
|
|
811
|
+
dh_bdot(const char* name)
|
|
812
|
+
/* ---------------------------------------------------------------------- */
|
|
813
|
+
{
|
|
814
|
+
char token[MAX_LENGTH];
|
|
815
|
+
class species* s_ptr;
|
|
816
|
+
double b = -999.99;
|
|
817
|
+
if (llnl_temp.size() > 0)
|
|
818
|
+
{
|
|
819
|
+
b = bdot_llnl;
|
|
820
|
+
}
|
|
821
|
+
else
|
|
822
|
+
{
|
|
823
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
824
|
+
s_ptr = s_search(token);
|
|
825
|
+
if (s_ptr != NULL)
|
|
826
|
+
{
|
|
827
|
+
b = s_ptr->dhb;
|
|
828
|
+
}
|
|
829
|
+
}
|
|
830
|
+
return (b);
|
|
831
|
+
}
|
|
832
|
+
/* ---------------------------------------------------------------------- */
|
|
833
|
+
LDBLE Phreeqc::
|
|
834
|
+
calc_deltah_p(const char* name)
|
|
835
|
+
/* ---------------------------------------------------------------------- */
|
|
836
|
+
{
|
|
837
|
+
int i, j;
|
|
838
|
+
char token[MAX_LENGTH];
|
|
839
|
+
class phase* phase_ptr;
|
|
840
|
+
LDBLE lkm, lkp;
|
|
841
|
+
LDBLE l_logk[MAX_LOG_K_INDICES];
|
|
842
|
+
double dh = -999.99;
|
|
843
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
844
|
+
phase_ptr = phase_bsearch(token, &j, FALSE);
|
|
845
|
+
|
|
846
|
+
if (phase_ptr != NULL)
|
|
847
|
+
{
|
|
848
|
+
CReaction* reaction_ptr;
|
|
849
|
+
if (phase_ptr->replaced)
|
|
850
|
+
reaction_ptr = &phase_ptr->rxn_s;
|
|
851
|
+
else
|
|
852
|
+
reaction_ptr = &phase_ptr->rxn;
|
|
853
|
+
/*
|
|
854
|
+
* Print saturation index
|
|
855
|
+
*/
|
|
856
|
+
reaction_ptr->logk[delta_v] = calc_delta_v(*reaction_ptr, true) -
|
|
857
|
+
phase_ptr->logk[vm0];
|
|
858
|
+
if (reaction_ptr->logk[delta_v])
|
|
859
|
+
mu_terms_in_logk = true;
|
|
860
|
+
for (i = 0; i < MAX_LOG_K_INDICES; i++)
|
|
861
|
+
{
|
|
862
|
+
l_logk[i] = 0.0;
|
|
863
|
+
}
|
|
864
|
+
//lk = k_calc(reaction_ptr->logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
865
|
+
select_log_k_expression(reaction_ptr->logk, l_logk);
|
|
866
|
+
add_other_logk(l_logk, phase_ptr->add_logk);
|
|
867
|
+
lkm = k_calc(l_logk, tk_x - 1.0, patm_x * PASCAL_PER_ATM);
|
|
868
|
+
lkp = k_calc(l_logk, tk_x + 1.0, patm_x * PASCAL_PER_ATM);
|
|
869
|
+
dh = (lkp - lkm) / 2.0 * LOG_10 * R_KJ_DEG_MOL * pow(tk_x, 2.0);
|
|
870
|
+
}
|
|
871
|
+
return (dh);
|
|
872
|
+
}
|
|
873
|
+
/* ---------------------------------------------------------------------- */
|
|
874
|
+
LDBLE Phreeqc::
|
|
875
|
+
calc_deltah_s(const char* name)
|
|
876
|
+
/* ---------------------------------------------------------------------- */
|
|
877
|
+
{
|
|
878
|
+
int i;
|
|
879
|
+
char token[MAX_LENGTH];
|
|
880
|
+
class species* s_ptr;
|
|
881
|
+
LDBLE lkm, lkp, l_logk[MAX_LOG_K_INDICES];
|
|
882
|
+
double dh = -999.99;
|
|
883
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
884
|
+
s_ptr = s_search(token);
|
|
885
|
+
if (s_ptr != NULL)
|
|
886
|
+
{
|
|
887
|
+
/* calculate delta_v for the reaction... */
|
|
888
|
+
s_ptr->logk[delta_v] = calc_delta_v(*&s_ptr->rxn, false);
|
|
889
|
+
for (i = 0; i < MAX_LOG_K_INDICES; i++)
|
|
890
|
+
{
|
|
891
|
+
l_logk[i] = 0.0;
|
|
892
|
+
}
|
|
893
|
+
select_log_k_expression(s_ptr->logk, l_logk);
|
|
894
|
+
mu_terms_in_logk = true;
|
|
895
|
+
add_other_logk(l_logk, s_ptr->add_logk);
|
|
896
|
+
lkm = k_calc(l_logk, tk_x - 1.0, patm_x * PASCAL_PER_ATM);
|
|
897
|
+
lkp = k_calc(l_logk, tk_x + 1.0, patm_x * PASCAL_PER_ATM);
|
|
898
|
+
dh = (lkp - lkm) / 2.0 * LOG_10 * R_KJ_DEG_MOL * pow(tk_x, 2.0);
|
|
899
|
+
return (dh);
|
|
900
|
+
}
|
|
901
|
+
return (0.0);
|
|
902
|
+
}
|
|
903
|
+
/* ---------------------------------------------------------------------- */
|
|
904
|
+
LDBLE Phreeqc::
|
|
905
|
+
calc_surface_charge(const char* surface_name)
|
|
906
|
+
/* ---------------------------------------------------------------------- */
|
|
907
|
+
{
|
|
908
|
+
char token[MAX_LENGTH], token1[MAX_LENGTH];
|
|
909
|
+
const char* cptr;
|
|
910
|
+
int i, j, k;
|
|
911
|
+
LDBLE charge;
|
|
912
|
+
class rxn_token_temp* token_ptr;
|
|
913
|
+
class master* master_ptr;
|
|
914
|
+
/*
|
|
915
|
+
* Go through species, sum charge
|
|
916
|
+
*/
|
|
917
|
+
charge = 0;
|
|
918
|
+
for (k = 0; k < (int)this->s_x.size(); k++)
|
|
919
|
+
{
|
|
920
|
+
if (s_x[k]->type != SURF)
|
|
921
|
+
continue;
|
|
922
|
+
/*
|
|
923
|
+
* Match surface_name
|
|
924
|
+
*/
|
|
925
|
+
count_trxn = 0;
|
|
926
|
+
trxn_add(s_x[k]->rxn_s, 1.0, false); /* rxn_s is set in tidy_model */
|
|
927
|
+
for (i = 1; i < count_trxn; i++)
|
|
928
|
+
{
|
|
929
|
+
token_ptr = &(trxn.token[i]);
|
|
930
|
+
if (token_ptr->s->type != SURF)
|
|
931
|
+
continue;
|
|
932
|
+
master_ptr = trxn.token[i].s->primary;
|
|
933
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, master_ptr->elt->name);
|
|
934
|
+
replace("_", " ", token);
|
|
935
|
+
cptr = token;
|
|
936
|
+
copy_token(token1, &cptr, &j);
|
|
937
|
+
if (strcmp(surface_name, token1) == 0)
|
|
938
|
+
{
|
|
939
|
+
charge += s_x[k]->moles * s_x[k]->z;
|
|
940
|
+
}
|
|
941
|
+
}
|
|
942
|
+
}
|
|
943
|
+
return (charge);
|
|
944
|
+
}
|
|
945
|
+
/* ---------------------------------------------------------------------- */
|
|
946
|
+
LDBLE Phreeqc::
|
|
947
|
+
diff_layer_total(const char* total_name, const char* surface_name)
|
|
948
|
+
/* ---------------------------------------------------------------------- */
|
|
949
|
+
{
|
|
950
|
+
/*
|
|
951
|
+
* Provides total moles in DDL layer
|
|
952
|
+
*/
|
|
953
|
+
cxxSurfaceCharge* surface_charge_ptr1;
|
|
954
|
+
std::string name, token, surface_name_local;
|
|
955
|
+
class master* master_ptr;
|
|
956
|
+
|
|
957
|
+
LDBLE mass_water_surface;
|
|
958
|
+
LDBLE molality, moles_excess, moles_surface, charge;
|
|
959
|
+
|
|
960
|
+
if (use.Get_surface_ptr() == NULL || (dl_type_x == cxxSurface::NO_DL &&
|
|
961
|
+
strcmp_nocase("psi", total_name) != 0 &&
|
|
962
|
+
strcmp_nocase("psi1", total_name) != 0 &&
|
|
963
|
+
strcmp_nocase("psi2", total_name) != 0 &&
|
|
964
|
+
strcmp_nocase("charge", total_name) != 0
|
|
965
|
+
&& strcmp_nocase("charge1",
|
|
966
|
+
total_name) != 0
|
|
967
|
+
&& strcmp_nocase("charge2",
|
|
968
|
+
total_name) != 0
|
|
969
|
+
&& strcmp_nocase("sigma",
|
|
970
|
+
total_name) != 0
|
|
971
|
+
&& strcmp_nocase("sigma1",
|
|
972
|
+
total_name) != 0
|
|
973
|
+
&& strcmp_nocase("sigma2",
|
|
974
|
+
total_name) != 0))
|
|
975
|
+
return (0);
|
|
976
|
+
|
|
977
|
+
/*
|
|
978
|
+
* Find surface...
|
|
979
|
+
*/
|
|
980
|
+
int j;
|
|
981
|
+
for (j = 0; j < count_unknowns; j++)
|
|
982
|
+
{
|
|
983
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::DDL || use.Get_surface_ptr()->Get_type() == cxxSurface::CCM)
|
|
984
|
+
{
|
|
985
|
+
if (x[j]->type != SURFACE_CB)
|
|
986
|
+
continue;
|
|
987
|
+
name = x[j]->master[0]->elt->name;
|
|
988
|
+
Utilities::replace("_psi", "", name);
|
|
989
|
+
}
|
|
990
|
+
else if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
991
|
+
{
|
|
992
|
+
if (x[j]->type != SURFACE_CB)
|
|
993
|
+
continue;
|
|
994
|
+
name = x[j]->master[0]->elt->name;
|
|
995
|
+
Utilities::replace("_psi", "", name);
|
|
996
|
+
}
|
|
997
|
+
else
|
|
998
|
+
{
|
|
999
|
+
if (x[j]->type != SURFACE)
|
|
1000
|
+
continue;
|
|
1001
|
+
token = x[j]->master[0]->elt->name;
|
|
1002
|
+
Utilities::replace("_", " ", token);
|
|
1003
|
+
std::string::iterator b = token.begin();
|
|
1004
|
+
std::string::iterator e = token.end();
|
|
1005
|
+
CParser::copy_token(name, b, e);
|
|
1006
|
+
}
|
|
1007
|
+
if (surface_name != NULL)
|
|
1008
|
+
{
|
|
1009
|
+
if (strcmp(name.c_str(), surface_name) == 0)
|
|
1010
|
+
break;
|
|
1011
|
+
}
|
|
1012
|
+
else
|
|
1013
|
+
{
|
|
1014
|
+
break;
|
|
1015
|
+
}
|
|
1016
|
+
}
|
|
1017
|
+
if (j >= count_unknowns)
|
|
1018
|
+
return (0);
|
|
1019
|
+
surface_name_local = name;
|
|
1020
|
+
/*
|
|
1021
|
+
* Psi, charge, sigma
|
|
1022
|
+
*/
|
|
1023
|
+
if (strcmp_nocase("psi", total_name) == 0)
|
|
1024
|
+
{
|
|
1025
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::DDL || use.Get_surface_ptr()->Get_type() == cxxSurface::CCM)
|
|
1026
|
+
{
|
|
1027
|
+
return ((LDBLE)(x[j]->master[0]->s->la * 2 * R_KJ_DEG_MOL *
|
|
1028
|
+
tk_x * LOG_10 / F_KJ_V_EQ));
|
|
1029
|
+
}
|
|
1030
|
+
else if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
1031
|
+
{
|
|
1032
|
+
master_ptr = surface_get_psi_master(surface_name, SURF_PSI);
|
|
1033
|
+
if (master_ptr != NULL)
|
|
1034
|
+
{
|
|
1035
|
+
return ((LDBLE)
|
|
1036
|
+
(-master_ptr->s->la * R_KJ_DEG_MOL * tk_x * LOG_10 /
|
|
1037
|
+
F_KJ_V_EQ));
|
|
1038
|
+
}
|
|
1039
|
+
else
|
|
1040
|
+
{
|
|
1041
|
+
return (0.0);
|
|
1042
|
+
}
|
|
1043
|
+
}
|
|
1044
|
+
else
|
|
1045
|
+
{
|
|
1046
|
+
return (0);
|
|
1047
|
+
}
|
|
1048
|
+
}
|
|
1049
|
+
else if (strcmp_nocase("psi1", total_name) == 0)
|
|
1050
|
+
{
|
|
1051
|
+
master_ptr = surface_get_psi_master(surface_name, SURF_PSI1);
|
|
1052
|
+
if (master_ptr != NULL)
|
|
1053
|
+
{
|
|
1054
|
+
return ((LDBLE)
|
|
1055
|
+
(-master_ptr->s->la * R_KJ_DEG_MOL * tk_x * LOG_10 /
|
|
1056
|
+
F_KJ_V_EQ));
|
|
1057
|
+
}
|
|
1058
|
+
else
|
|
1059
|
+
{
|
|
1060
|
+
return (0.0);
|
|
1061
|
+
}
|
|
1062
|
+
}
|
|
1063
|
+
else if (strcmp_nocase("psi2", total_name) == 0)
|
|
1064
|
+
{
|
|
1065
|
+
master_ptr = surface_get_psi_master(surface_name, SURF_PSI2);
|
|
1066
|
+
if (master_ptr != NULL)
|
|
1067
|
+
{
|
|
1068
|
+
return ((LDBLE)
|
|
1069
|
+
(-master_ptr->s->la * R_KJ_DEG_MOL * tk_x * LOG_10 /
|
|
1070
|
+
F_KJ_V_EQ));
|
|
1071
|
+
}
|
|
1072
|
+
else
|
|
1073
|
+
{
|
|
1074
|
+
return (0.0);
|
|
1075
|
+
}
|
|
1076
|
+
}
|
|
1077
|
+
else if (strcmp_nocase("charge", total_name) == 0)
|
|
1078
|
+
{
|
|
1079
|
+
if ((use.Get_surface_ptr()->Get_type() == cxxSurface::DDL || use.Get_surface_ptr()->Get_type() == cxxSurface::CCM) && dl_type_x == cxxSurface::NO_DL)
|
|
1080
|
+
{
|
|
1081
|
+
return ((LDBLE)(x[j]->f));
|
|
1082
|
+
}
|
|
1083
|
+
else if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
1084
|
+
{
|
|
1085
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1086
|
+
return ((charge_ptr->Get_sigma0() *
|
|
1087
|
+
(charge_ptr->Get_specific_area() *
|
|
1088
|
+
charge_ptr->Get_grams()) / F_C_MOL));
|
|
1089
|
+
}
|
|
1090
|
+
else
|
|
1091
|
+
{
|
|
1092
|
+
return (calc_surface_charge(surface_name_local.c_str()));
|
|
1093
|
+
}
|
|
1094
|
+
}
|
|
1095
|
+
else if (strcmp_nocase("charge1", total_name) == 0)
|
|
1096
|
+
{
|
|
1097
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
1098
|
+
{
|
|
1099
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1100
|
+
return ((charge_ptr->Get_sigma1() *
|
|
1101
|
+
(charge_ptr->Get_specific_area() *
|
|
1102
|
+
charge_ptr->Get_grams()) / F_C_MOL));
|
|
1103
|
+
}
|
|
1104
|
+
else
|
|
1105
|
+
{
|
|
1106
|
+
return (0);
|
|
1107
|
+
}
|
|
1108
|
+
}
|
|
1109
|
+
else if (strcmp_nocase("charge2", total_name) == 0)
|
|
1110
|
+
{
|
|
1111
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
1112
|
+
{
|
|
1113
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1114
|
+
return ((charge_ptr->Get_sigma2() *
|
|
1115
|
+
(charge_ptr->Get_specific_area() *
|
|
1116
|
+
charge_ptr->Get_grams()) / F_C_MOL));
|
|
1117
|
+
}
|
|
1118
|
+
else
|
|
1119
|
+
{
|
|
1120
|
+
return (0);
|
|
1121
|
+
}
|
|
1122
|
+
}
|
|
1123
|
+
else if (strcmp_nocase("sigma", total_name) == 0)
|
|
1124
|
+
{
|
|
1125
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::DDL || use.Get_surface_ptr()->Get_type() == cxxSurface::CCM)
|
|
1126
|
+
{
|
|
1127
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1128
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1129
|
+
{
|
|
1130
|
+
charge = calc_surface_charge(surface_name_local.c_str());
|
|
1131
|
+
}
|
|
1132
|
+
else
|
|
1133
|
+
{
|
|
1134
|
+
charge = x[j]->f;
|
|
1135
|
+
}
|
|
1136
|
+
if ((charge_ptr->Get_specific_area() *
|
|
1137
|
+
charge_ptr->Get_grams()) > 0)
|
|
1138
|
+
{
|
|
1139
|
+
return ((charge * F_C_MOL /
|
|
1140
|
+
(charge_ptr->Get_specific_area() *
|
|
1141
|
+
charge_ptr->Get_grams())));
|
|
1142
|
+
}
|
|
1143
|
+
else
|
|
1144
|
+
{
|
|
1145
|
+
return (0);
|
|
1146
|
+
}
|
|
1147
|
+
}
|
|
1148
|
+
else if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
1149
|
+
{
|
|
1150
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1151
|
+
return ((LDBLE)(charge_ptr->Get_sigma0()));
|
|
1152
|
+
}
|
|
1153
|
+
else
|
|
1154
|
+
{
|
|
1155
|
+
return (0);
|
|
1156
|
+
}
|
|
1157
|
+
}
|
|
1158
|
+
else if (strcmp_nocase("sigma1", total_name) == 0)
|
|
1159
|
+
{
|
|
1160
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
1161
|
+
{
|
|
1162
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1163
|
+
return ((LDBLE)(charge_ptr->Get_sigma1()));
|
|
1164
|
+
}
|
|
1165
|
+
else
|
|
1166
|
+
{
|
|
1167
|
+
return (0);
|
|
1168
|
+
}
|
|
1169
|
+
}
|
|
1170
|
+
else if (strcmp_nocase("sigma2", total_name) == 0)
|
|
1171
|
+
{
|
|
1172
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC)
|
|
1173
|
+
{
|
|
1174
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1175
|
+
return ((LDBLE)(charge_ptr->Get_sigma2()));
|
|
1176
|
+
}
|
|
1177
|
+
else
|
|
1178
|
+
{
|
|
1179
|
+
return (0);
|
|
1180
|
+
}
|
|
1181
|
+
}
|
|
1182
|
+
else if (strcmp_nocase("water", total_name) == 0)
|
|
1183
|
+
{
|
|
1184
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1185
|
+
{
|
|
1186
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1187
|
+
return (charge_ptr->Get_mass_water());
|
|
1188
|
+
}
|
|
1189
|
+
else
|
|
1190
|
+
{
|
|
1191
|
+
return (0);
|
|
1192
|
+
}
|
|
1193
|
+
}
|
|
1194
|
+
else if (strcmp_nocase("viscos_ddl", total_name) == 0)
|
|
1195
|
+
{
|
|
1196
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1197
|
+
{
|
|
1198
|
+
cxxSurfaceCharge* charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1199
|
+
if (charge_ptr->Get_mass_water() > 0)
|
|
1200
|
+
{
|
|
1201
|
+
cxxSurface * surf_ptr = use.Get_surface_ptr();
|
|
1202
|
+
if (surf_ptr->Get_calc_viscosity())
|
|
1203
|
+
{
|
|
1204
|
+
viscosity(surf_ptr);
|
|
1205
|
+
viscosity(nullptr);
|
|
1206
|
+
return charge_ptr->Get_DDL_viscosity();
|
|
1207
|
+
}
|
|
1208
|
+
else
|
|
1209
|
+
return charge_ptr->Get_DDL_viscosity() * viscos;
|
|
1210
|
+
}
|
|
1211
|
+
}
|
|
1212
|
+
else
|
|
1213
|
+
{
|
|
1214
|
+
return (0);
|
|
1215
|
+
}
|
|
1216
|
+
}
|
|
1217
|
+
/*
|
|
1218
|
+
* find total moles of each element in diffuse layer...
|
|
1219
|
+
*/
|
|
1220
|
+
surface_charge_ptr1 = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1221
|
+
if (surface_charge_ptr1)
|
|
1222
|
+
{
|
|
1223
|
+
mass_water_surface = surface_charge_ptr1->Get_mass_water();
|
|
1224
|
+
count_elts = 0;
|
|
1225
|
+
paren_count = 0;
|
|
1226
|
+
for (j = 0; j < (int)this->s_x.size(); j++)
|
|
1227
|
+
{
|
|
1228
|
+
if (s_x[j]->type > HPLUS)
|
|
1229
|
+
continue;
|
|
1230
|
+
molality = under(s_x[j]->lm);
|
|
1231
|
+
LDBLE g = surface_charge_ptr1->Get_g_map()[s_x[j]->z].Get_g();
|
|
1232
|
+
|
|
1233
|
+
moles_excess = mass_water_aq_x * molality * (g * s_x[j]->erm_ddl +
|
|
1234
|
+
mass_water_surface /
|
|
1235
|
+
mass_water_aq_x * (s_x[j]->erm_ddl - 1));
|
|
1236
|
+
moles_surface = mass_water_surface * molality + moles_excess;
|
|
1237
|
+
/*
|
|
1238
|
+
* Accumulate elements in diffuse layer
|
|
1239
|
+
*/
|
|
1240
|
+
add_elt_list(s_x[j]->next_elt, moles_surface);
|
|
1241
|
+
}
|
|
1242
|
+
elt_list_combine();
|
|
1243
|
+
/*
|
|
1244
|
+
* Return totals
|
|
1245
|
+
*/
|
|
1246
|
+
for (j = 0; j < count_elts; j++)
|
|
1247
|
+
{
|
|
1248
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
1249
|
+
{
|
|
1250
|
+
return ((LDBLE)elt_list[j].coef);
|
|
1251
|
+
}
|
|
1252
|
+
}
|
|
1253
|
+
}
|
|
1254
|
+
return (0);
|
|
1255
|
+
}
|
|
1256
|
+
/* ---------------------------------------------------------------------- */
|
|
1257
|
+
LDBLE Phreeqc::
|
|
1258
|
+
calc_t_sc(const char* name)
|
|
1259
|
+
/* ---------------------------------------------------------------------- */
|
|
1260
|
+
{
|
|
1261
|
+
char token[MAX_LENGTH];
|
|
1262
|
+
class species* s_ptr;
|
|
1263
|
+
|
|
1264
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
1265
|
+
s_ptr = s_search(token);
|
|
1266
|
+
if (s_ptr != NULL && s_ptr->in)
|
|
1267
|
+
{
|
|
1268
|
+
if (!s_ptr->z)
|
|
1269
|
+
return (0);
|
|
1270
|
+
calc_SC();
|
|
1271
|
+
if (!SC)
|
|
1272
|
+
return (0);
|
|
1273
|
+
LDBLE t = s_ptr->dw_t_SC * 1e7 * F_C_MOL * F_C_MOL / (R_KJ_DEG_MOL * 298150.0);
|
|
1274
|
+
return (t / SC);
|
|
1275
|
+
}
|
|
1276
|
+
return (0);
|
|
1277
|
+
}
|
|
1278
|
+
|
|
1279
|
+
/* ---------------------------------------------------------------------- */
|
|
1280
|
+
LDBLE Phreeqc::
|
|
1281
|
+
calc_f_visc(const char* name)
|
|
1282
|
+
/* ---------------------------------------------------------------------- */
|
|
1283
|
+
{
|
|
1284
|
+
char token[MAX_LENGTH];
|
|
1285
|
+
class species* s_ptr;
|
|
1286
|
+
|
|
1287
|
+
if (print_viscosity)
|
|
1288
|
+
{
|
|
1289
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
1290
|
+
s_ptr = s_search(token);
|
|
1291
|
+
if (s_ptr != NULL && s_ptr->in)
|
|
1292
|
+
return s_ptr->dw_t_visc;
|
|
1293
|
+
}
|
|
1294
|
+
return 0;
|
|
1295
|
+
}
|
|
1296
|
+
|
|
1297
|
+
/* ---------------------------------------------------------------------- */
|
|
1298
|
+
LDBLE Phreeqc::
|
|
1299
|
+
equi_phase(const char* phase_name)
|
|
1300
|
+
/* ---------------------------------------------------------------------- */
|
|
1301
|
+
{
|
|
1302
|
+
int j;
|
|
1303
|
+
|
|
1304
|
+
if (use.Get_pp_assemblage_in() == FALSE || use.Get_pp_assemblage_ptr() == NULL)
|
|
1305
|
+
return (0);
|
|
1306
|
+
for (j = 0; j < count_unknowns; j++)
|
|
1307
|
+
{
|
|
1308
|
+
if (x[j]->type != PP)
|
|
1309
|
+
continue;
|
|
1310
|
+
if (strcmp_nocase(x[j]->pp_assemblage_comp_name, phase_name) == 0)
|
|
1311
|
+
{
|
|
1312
|
+
break;
|
|
1313
|
+
}
|
|
1314
|
+
}
|
|
1315
|
+
/*
|
|
1316
|
+
* Print pure phase assemblage data
|
|
1317
|
+
*/
|
|
1318
|
+
cxxPPassemblage* pp_assemblage_ptr = use.Get_pp_assemblage_ptr();
|
|
1319
|
+
if (j == count_unknowns)
|
|
1320
|
+
{
|
|
1321
|
+
/* if not an unknown */
|
|
1322
|
+
std::map<std::string, cxxPPassemblageComp>::iterator it;
|
|
1323
|
+
it = pp_assemblage_ptr->Get_pp_assemblage_comps().begin();
|
|
1324
|
+
for (; it != pp_assemblage_ptr->Get_pp_assemblage_comps().end(); it++)
|
|
1325
|
+
{
|
|
1326
|
+
if (strcmp_nocase
|
|
1327
|
+
(it->second.Get_name().c_str(), phase_name) == 0)
|
|
1328
|
+
{
|
|
1329
|
+
return (it->second.Get_moles());
|
|
1330
|
+
}
|
|
1331
|
+
}
|
|
1332
|
+
}
|
|
1333
|
+
else
|
|
1334
|
+
{
|
|
1335
|
+
/* if an unknown */
|
|
1336
|
+
if (x[j]->moles < 0.0)
|
|
1337
|
+
x[j]->moles = 0.0;
|
|
1338
|
+
return (x[j]->moles);
|
|
1339
|
+
}
|
|
1340
|
+
return (0);
|
|
1341
|
+
}
|
|
1342
|
+
/* ---------------------------------------------------------------------- */
|
|
1343
|
+
LDBLE Phreeqc::
|
|
1344
|
+
equi_phase_delta(const char* phase_name)
|
|
1345
|
+
/* ---------------------------------------------------------------------- */
|
|
1346
|
+
{
|
|
1347
|
+
int j;
|
|
1348
|
+
|
|
1349
|
+
if (use.Get_pp_assemblage_in() == FALSE || use.Get_pp_assemblage_ptr() == NULL)
|
|
1350
|
+
return (0);
|
|
1351
|
+
for (j = 0; j < count_unknowns; j++)
|
|
1352
|
+
{
|
|
1353
|
+
if (x[j]->type != PP)
|
|
1354
|
+
continue;
|
|
1355
|
+
if (strcmp_nocase(x[j]->pp_assemblage_comp_name, phase_name) == 0)
|
|
1356
|
+
{
|
|
1357
|
+
break;
|
|
1358
|
+
}
|
|
1359
|
+
}
|
|
1360
|
+
/*
|
|
1361
|
+
* Print pure phase assemblage data
|
|
1362
|
+
*/
|
|
1363
|
+
cxxPPassemblage* pp_assemblage_ptr = use.Get_pp_assemblage_ptr();
|
|
1364
|
+
if (j == count_unknowns)
|
|
1365
|
+
{
|
|
1366
|
+
/* if not an unknown */
|
|
1367
|
+
std::map<std::string, cxxPPassemblageComp>::iterator it;
|
|
1368
|
+
it = pp_assemblage_ptr->Get_pp_assemblage_comps().begin();
|
|
1369
|
+
for (; it != pp_assemblage_ptr->Get_pp_assemblage_comps().end(); it++)
|
|
1370
|
+
{
|
|
1371
|
+
if (strcmp_nocase
|
|
1372
|
+
(it->second.Get_name().c_str(), phase_name) == 0)
|
|
1373
|
+
{
|
|
1374
|
+
cxxPPassemblageComp* comp_ptr = &(it->second);
|
|
1375
|
+
if (state != TRANSPORT && state != PHAST)
|
|
1376
|
+
{
|
|
1377
|
+
//LDBLE moles = it->second.Get_moles();
|
|
1378
|
+
//LDBLE delta_moles = moles - comp_ptr->Get_moles() -
|
|
1379
|
+
// comp_ptr->Get_delta();
|
|
1380
|
+
return(0);
|
|
1381
|
+
}
|
|
1382
|
+
else
|
|
1383
|
+
{
|
|
1384
|
+
LDBLE moles = it->second.Get_moles();
|
|
1385
|
+
LDBLE delta_moles = moles - comp_ptr->Get_initial_moles();
|
|
1386
|
+
return(delta_moles);
|
|
1387
|
+
}
|
|
1388
|
+
}
|
|
1389
|
+
}
|
|
1390
|
+
}
|
|
1391
|
+
else
|
|
1392
|
+
{
|
|
1393
|
+
//cxxPPassemblageComp * comp_ptr = pp_assemblage_ptr->Find(x[j]->pp_assemblage_comp_name);
|
|
1394
|
+
cxxPPassemblageComp* comp_ptr = (cxxPPassemblageComp*)x[j]->pp_assemblage_comp_ptr;
|
|
1395
|
+
if (state != TRANSPORT && state != PHAST)
|
|
1396
|
+
{
|
|
1397
|
+
LDBLE delta_moles =
|
|
1398
|
+
x[j]->moles - comp_ptr->Get_moles() -
|
|
1399
|
+
comp_ptr->Get_delta();
|
|
1400
|
+
return(delta_moles);
|
|
1401
|
+
}
|
|
1402
|
+
else
|
|
1403
|
+
{
|
|
1404
|
+
LDBLE delta_moles =
|
|
1405
|
+
x[j]->moles - comp_ptr->Get_initial_moles();
|
|
1406
|
+
return(delta_moles);
|
|
1407
|
+
}
|
|
1408
|
+
}
|
|
1409
|
+
return (0);
|
|
1410
|
+
}
|
|
1411
|
+
|
|
1412
|
+
/* ---------------------------------------------------------------------- */
|
|
1413
|
+
LDBLE Phreeqc::
|
|
1414
|
+
equivalent_fraction(const char* name, LDBLE* eq, std::string& elt_name)
|
|
1415
|
+
/* ---------------------------------------------------------------------- */
|
|
1416
|
+
{
|
|
1417
|
+
class species* s_ptr = s_search(name);
|
|
1418
|
+
*eq = 0;
|
|
1419
|
+
elt_name.clear();
|
|
1420
|
+
LDBLE f = 0;
|
|
1421
|
+
if (s_ptr != NULL && (s_ptr->type == EX || s_ptr->type == SURF))
|
|
1422
|
+
{
|
|
1423
|
+
*eq = s_ptr->equiv;
|
|
1424
|
+
const class elt_list* next_elt;
|
|
1425
|
+
LDBLE tot = 0.0;
|
|
1426
|
+
for (next_elt = &s_ptr->next_elt[0]; next_elt->elt != NULL; next_elt++)
|
|
1427
|
+
{
|
|
1428
|
+
if (next_elt->elt->master->s->type == SURF ||
|
|
1429
|
+
next_elt->elt->master->s->type == EX)
|
|
1430
|
+
{
|
|
1431
|
+
tot = total_mole(next_elt->elt->name);
|
|
1432
|
+
elt_name = next_elt->elt->name;
|
|
1433
|
+
}
|
|
1434
|
+
}
|
|
1435
|
+
if (s_ptr->in == TRUE && tot > 0.0)
|
|
1436
|
+
{
|
|
1437
|
+
f = s_ptr->moles * s_ptr->equiv / tot;
|
|
1438
|
+
}
|
|
1439
|
+
}
|
|
1440
|
+
return f;
|
|
1441
|
+
}
|
|
1442
|
+
/* ---------------------------------------------------------------------- */
|
|
1443
|
+
LDBLE Phreeqc::
|
|
1444
|
+
find_gas_comp(const char* gas_comp_name)
|
|
1445
|
+
/* ---------------------------------------------------------------------- */
|
|
1446
|
+
{
|
|
1447
|
+
int i;
|
|
1448
|
+
|
|
1449
|
+
if (use.Get_gas_phase_in() == FALSE || use.Get_gas_phase_ptr() == NULL)
|
|
1450
|
+
return (0);
|
|
1451
|
+
cxxGasPhase* gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1452
|
+
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
|
|
1453
|
+
{
|
|
1454
|
+
if (strcmp_nocase(gas_phase_ptr->Get_gas_comps()[j].Get_phase_name().c_str(), gas_comp_name) == 0)
|
|
1455
|
+
{
|
|
1456
|
+
class phase* phase_ptr = phase_bsearch(gas_comp_name, &i, false);
|
|
1457
|
+
if (phase_ptr)
|
|
1458
|
+
{
|
|
1459
|
+
return (phase_ptr->moles_x);
|
|
1460
|
+
}
|
|
1461
|
+
}
|
|
1462
|
+
}
|
|
1463
|
+
return (0);
|
|
1464
|
+
}
|
|
1465
|
+
/* ---------------------------------------------------------------------- */
|
|
1466
|
+
LDBLE Phreeqc::
|
|
1467
|
+
find_gas_p(void)
|
|
1468
|
+
/* ---------------------------------------------------------------------- */
|
|
1469
|
+
{
|
|
1470
|
+
if (use.Get_gas_phase_in() == FALSE || use.Get_gas_phase_ptr() == NULL)
|
|
1471
|
+
return (0);
|
|
1472
|
+
cxxGasPhase* gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1473
|
+
if (gas_phase_ptr->Get_type() == cxxGasPhase::GP_PRESSURE)
|
|
1474
|
+
{
|
|
1475
|
+
if (gas_unknown == NULL)
|
|
1476
|
+
return (0);
|
|
1477
|
+
if (gas_unknown->moles < 1e-12)
|
|
1478
|
+
return (0);
|
|
1479
|
+
}
|
|
1480
|
+
return (gas_phase_ptr->Get_total_p());
|
|
1481
|
+
}
|
|
1482
|
+
/* ---------------------------------------------------------------------- */
|
|
1483
|
+
LDBLE Phreeqc::
|
|
1484
|
+
find_gas_vm(void)
|
|
1485
|
+
/* ---------------------------------------------------------------------- */
|
|
1486
|
+
{
|
|
1487
|
+
if (use.Get_gas_phase_in() == FALSE || use.Get_gas_phase_ptr() == NULL)
|
|
1488
|
+
return (0);
|
|
1489
|
+
cxxGasPhase* gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1490
|
+
if (gas_phase_ptr->Get_type() == cxxGasPhase::GP_PRESSURE)
|
|
1491
|
+
{
|
|
1492
|
+
if (gas_unknown == NULL)
|
|
1493
|
+
return (0);
|
|
1494
|
+
if (gas_unknown->moles < 1e-12)
|
|
1495
|
+
return (0);
|
|
1496
|
+
gas_phase_ptr->Set_total_moles(gas_unknown->moles);
|
|
1497
|
+
gas_phase_ptr->Set_volume(gas_phase_ptr->Get_total_moles() * R_LITER_ATM * tk_x /
|
|
1498
|
+
gas_phase_ptr->Get_total_p());
|
|
1499
|
+
if (gas_phase_ptr->Get_v_m() >= 0.01)
|
|
1500
|
+
gas_phase_ptr->Set_volume(gas_phase_ptr->Get_v_m() * gas_unknown->moles);
|
|
1501
|
+
}
|
|
1502
|
+
return gas_phase_ptr->Get_volume() / gas_phase_ptr->Get_total_moles();
|
|
1503
|
+
}
|
|
1504
|
+
|
|
1505
|
+
/* ---------------------------------------------------------------------- */
|
|
1506
|
+
LDBLE Phreeqc::
|
|
1507
|
+
find_misc1(const char* ss_name)
|
|
1508
|
+
/* ---------------------------------------------------------------------- */
|
|
1509
|
+
{
|
|
1510
|
+
if (use.Get_ss_assemblage_in() == FALSE || use.Get_ss_assemblage_ptr() == NULL)
|
|
1511
|
+
return (0.0);
|
|
1512
|
+
std::vector<cxxSS*> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
1513
|
+
for (size_t j = 0; j < ss_ptrs.size(); j++)
|
|
1514
|
+
{
|
|
1515
|
+
cxxSS* ss_ptr = ss_ptrs[j];
|
|
1516
|
+
if (strcmp_nocase(ss_ptr->Get_name().c_str(), ss_name) == 0)
|
|
1517
|
+
{
|
|
1518
|
+
if (ss_ptr->Get_miscibility())
|
|
1519
|
+
{
|
|
1520
|
+
return (ss_ptr->Get_xb1());
|
|
1521
|
+
}
|
|
1522
|
+
else
|
|
1523
|
+
{
|
|
1524
|
+
return (1.0);
|
|
1525
|
+
}
|
|
1526
|
+
}
|
|
1527
|
+
}
|
|
1528
|
+
return (0);
|
|
1529
|
+
}
|
|
1530
|
+
|
|
1531
|
+
/* ---------------------------------------------------------------------- */
|
|
1532
|
+
LDBLE Phreeqc::
|
|
1533
|
+
find_misc2(const char* ss_name)
|
|
1534
|
+
/* ---------------------------------------------------------------------- */
|
|
1535
|
+
{
|
|
1536
|
+
if (use.Get_ss_assemblage_in() == FALSE || use.Get_ss_assemblage_ptr() == NULL)
|
|
1537
|
+
return (0.0);
|
|
1538
|
+
std::vector<cxxSS*> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
1539
|
+
for (size_t j = 0; j < ss_ptrs.size(); j++)
|
|
1540
|
+
{
|
|
1541
|
+
cxxSS* ss_ptr = ss_ptrs[j];
|
|
1542
|
+
if (strcmp_nocase(ss_ptr->Get_name().c_str(), ss_name) == 0)
|
|
1543
|
+
{
|
|
1544
|
+
if (ss_ptr->Get_miscibility())
|
|
1545
|
+
{
|
|
1546
|
+
return (ss_ptr->Get_xb2());
|
|
1547
|
+
}
|
|
1548
|
+
else
|
|
1549
|
+
{
|
|
1550
|
+
return (1.0);
|
|
1551
|
+
}
|
|
1552
|
+
}
|
|
1553
|
+
}
|
|
1554
|
+
return (0);
|
|
1555
|
+
}
|
|
1556
|
+
|
|
1557
|
+
/* ---------------------------------------------------------------------- */
|
|
1558
|
+
LDBLE Phreeqc::
|
|
1559
|
+
find_ss_comp(const char* ss_comp_name)
|
|
1560
|
+
/* ---------------------------------------------------------------------- */
|
|
1561
|
+
{
|
|
1562
|
+
if (use.Get_ss_assemblage_in() == FALSE || use.Get_ss_assemblage_ptr() == NULL)
|
|
1563
|
+
return (0);
|
|
1564
|
+
|
|
1565
|
+
std::vector<cxxSS*> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
1566
|
+
for (size_t j = 0; j < ss_ptrs.size(); j++)
|
|
1567
|
+
{
|
|
1568
|
+
cxxSS* ss_ptr = ss_ptrs[j];
|
|
1569
|
+
for (size_t i = 0; i < ss_ptr->Get_ss_comps().size(); i++)
|
|
1570
|
+
{
|
|
1571
|
+
cxxSScomp* comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
1572
|
+
if (strcmp_nocase(comp_ptr->Get_name().c_str(), ss_comp_name) == 0)
|
|
1573
|
+
{
|
|
1574
|
+
if (ss_ptr->Get_ss_in())
|
|
1575
|
+
{
|
|
1576
|
+
return (comp_ptr->Get_moles());
|
|
1577
|
+
}
|
|
1578
|
+
else
|
|
1579
|
+
{
|
|
1580
|
+
return (0.0);
|
|
1581
|
+
}
|
|
1582
|
+
}
|
|
1583
|
+
}
|
|
1584
|
+
}
|
|
1585
|
+
return (0);
|
|
1586
|
+
}
|
|
1587
|
+
/* ---------------------------------------------------------------------- */
|
|
1588
|
+
LDBLE Phreeqc::
|
|
1589
|
+
get_calculate_value(const char* name)
|
|
1590
|
+
/* ---------------------------------------------------------------------- */
|
|
1591
|
+
/*
|
|
1592
|
+
* Gets value from a calclate_value structure
|
|
1593
|
+
* arguments: name
|
|
1594
|
+
* return: LDBLE of value
|
|
1595
|
+
*/
|
|
1596
|
+
{
|
|
1597
|
+
class calculate_value* calculate_value_ptr;
|
|
1598
|
+
calculate_value_ptr = calculate_value_search(name);
|
|
1599
|
+
if (calculate_value_ptr == NULL)
|
|
1600
|
+
{
|
|
1601
|
+
error_string = sformatf("CALC_VALUE Basic function, %s not found.",
|
|
1602
|
+
name);
|
|
1603
|
+
//error_msg(error_string, CONTINUE);
|
|
1604
|
+
//input_error++;
|
|
1605
|
+
warning_msg(error_string);
|
|
1606
|
+
return (MISSING);
|
|
1607
|
+
}
|
|
1608
|
+
if (name == NULL)
|
|
1609
|
+
{
|
|
1610
|
+
error_string = sformatf(
|
|
1611
|
+
"Definition for calculated value not found, %s", name);
|
|
1612
|
+
input_error++;
|
|
1613
|
+
error_msg(error_string, CONTINUE);
|
|
1614
|
+
return (MISSING);
|
|
1615
|
+
}
|
|
1616
|
+
|
|
1617
|
+
char l_command[] = "run";
|
|
1618
|
+
PBasic interp(this, this->phrq_io);
|
|
1619
|
+
if (calculate_value_ptr->new_def == TRUE)
|
|
1620
|
+
{
|
|
1621
|
+
if (interp.basic_compile
|
|
1622
|
+
(calculate_value_ptr->commands.c_str(),
|
|
1623
|
+
&calculate_value_ptr->linebase,
|
|
1624
|
+
&calculate_value_ptr->varbase,
|
|
1625
|
+
&calculate_value_ptr->loopbase) != 0)
|
|
1626
|
+
{
|
|
1627
|
+
error_string = sformatf(
|
|
1628
|
+
"Fatal Basic error in CALCULATE_VALUES %s.",
|
|
1629
|
+
calculate_value_ptr->name);
|
|
1630
|
+
error_msg(error_string, STOP);
|
|
1631
|
+
}
|
|
1632
|
+
calculate_value_ptr->new_def = FALSE;
|
|
1633
|
+
}
|
|
1634
|
+
|
|
1635
|
+
if (interp.basic_run(l_command,
|
|
1636
|
+
calculate_value_ptr->linebase,
|
|
1637
|
+
calculate_value_ptr->varbase,
|
|
1638
|
+
calculate_value_ptr->loopbase) != 0)
|
|
1639
|
+
{
|
|
1640
|
+
error_string = sformatf("Fatal Basic error in calculate_value %s.",
|
|
1641
|
+
calculate_value_ptr->name);
|
|
1642
|
+
error_msg(error_string, STOP);
|
|
1643
|
+
}
|
|
1644
|
+
if (std::isnan(rate_moles))
|
|
1645
|
+
{
|
|
1646
|
+
error_string = sformatf("Calculated value not SAVEed for %s.",
|
|
1647
|
+
calculate_value_ptr->name);
|
|
1648
|
+
error_msg(error_string, STOP);
|
|
1649
|
+
}
|
|
1650
|
+
else
|
|
1651
|
+
{
|
|
1652
|
+
calculate_value_ptr->calculated = TRUE;
|
|
1653
|
+
calculate_value_ptr->value = rate_moles;
|
|
1654
|
+
}
|
|
1655
|
+
return (calculate_value_ptr->value);
|
|
1656
|
+
}
|
|
1657
|
+
/* ---------------------------------------------------------------------- */
|
|
1658
|
+
LDBLE Phreeqc::
|
|
1659
|
+
kinetics_moles(const char* kinetics_name)
|
|
1660
|
+
/* ---------------------------------------------------------------------- */
|
|
1661
|
+
{
|
|
1662
|
+
|
|
1663
|
+
if (use.Get_kinetics_in() == FALSE || use.Get_kinetics_ptr() == NULL)
|
|
1664
|
+
return (0);
|
|
1665
|
+
for (size_t i = 0; i < use.Get_kinetics_ptr()->Get_kinetics_comps().size(); i++)
|
|
1666
|
+
{
|
|
1667
|
+
cxxKineticsComp* kinetics_comp_ptr = &(use.Get_kinetics_ptr()->Get_kinetics_comps()[i]);
|
|
1668
|
+
if (strcmp_nocase
|
|
1669
|
+
(kinetics_comp_ptr->Get_rate_name().c_str(), kinetics_name) == 0)
|
|
1670
|
+
{
|
|
1671
|
+
return (kinetics_comp_ptr->Get_m());
|
|
1672
|
+
}
|
|
1673
|
+
}
|
|
1674
|
+
|
|
1675
|
+
error_string = sformatf("No data for rate %s in KINETICS keyword.",
|
|
1676
|
+
kinetics_name);
|
|
1677
|
+
//if (count_warnings >= 0) // appt debug cvode
|
|
1678
|
+
// warning_msg(error_string);
|
|
1679
|
+
return (0);
|
|
1680
|
+
}
|
|
1681
|
+
/* ---------------------------------------------------------------------- */
|
|
1682
|
+
LDBLE Phreeqc::
|
|
1683
|
+
kinetics_moles_delta(const char* kinetics_name)
|
|
1684
|
+
/* ---------------------------------------------------------------------- */
|
|
1685
|
+
{
|
|
1686
|
+
|
|
1687
|
+
if (use.Get_kinetics_in() == FALSE || use.Get_kinetics_ptr() == NULL)
|
|
1688
|
+
return (0);
|
|
1689
|
+
for (size_t i = 0; i < use.Get_kinetics_ptr()->Get_kinetics_comps().size(); i++)
|
|
1690
|
+
{
|
|
1691
|
+
cxxKineticsComp* kinetics_comp_ptr = &(use.Get_kinetics_ptr()->Get_kinetics_comps()[i]);
|
|
1692
|
+
if (strcmp_nocase
|
|
1693
|
+
(kinetics_comp_ptr->Get_rate_name().c_str(), kinetics_name) == 0)
|
|
1694
|
+
{
|
|
1695
|
+
//return (kinetics_comp_ptr->Get_m());
|
|
1696
|
+
|
|
1697
|
+
if (state != TRANSPORT && state != PHAST)
|
|
1698
|
+
{
|
|
1699
|
+
//LDBLE moles = kinetics_comp_ptr->Get_m();
|
|
1700
|
+
LDBLE delta_moles = -kinetics_comp_ptr->Get_moles();
|
|
1701
|
+
return delta_moles;
|
|
1702
|
+
}
|
|
1703
|
+
else
|
|
1704
|
+
{
|
|
1705
|
+
//moles = kinetics_comp_ptr->Get_m();
|
|
1706
|
+
LDBLE delta_moles =
|
|
1707
|
+
kinetics_comp_ptr->Get_m() -
|
|
1708
|
+
kinetics_comp_ptr->Get_initial_moles();
|
|
1709
|
+
return delta_moles;
|
|
1710
|
+
}
|
|
1711
|
+
}
|
|
1712
|
+
}
|
|
1713
|
+
|
|
1714
|
+
//error_string = sformatf( "No data for rate %s in KINETICS keyword.",
|
|
1715
|
+
// kinetics_name);
|
|
1716
|
+
//warning_msg(error_string);
|
|
1717
|
+
return (0);
|
|
1718
|
+
}
|
|
1719
|
+
/* ---------------------------------------------------------------------- */
|
|
1720
|
+
LDBLE Phreeqc::
|
|
1721
|
+
log_activity(const char* species_name)
|
|
1722
|
+
/* ---------------------------------------------------------------------- */
|
|
1723
|
+
{
|
|
1724
|
+
class species* s_ptr;
|
|
1725
|
+
LDBLE la;
|
|
1726
|
+
|
|
1727
|
+
s_ptr = s_search(species_name);
|
|
1728
|
+
|
|
1729
|
+
if (s_ptr == s_eminus)
|
|
1730
|
+
{
|
|
1731
|
+
la = s_eminus->la;
|
|
1732
|
+
}
|
|
1733
|
+
else if (s_ptr == NULL || s_ptr->in == FALSE)
|
|
1734
|
+
{
|
|
1735
|
+
la = -99.99;
|
|
1736
|
+
}
|
|
1737
|
+
else if (s_ptr == s_h2o)
|
|
1738
|
+
{
|
|
1739
|
+
la = s_h2o->la;
|
|
1740
|
+
}
|
|
1741
|
+
else
|
|
1742
|
+
{
|
|
1743
|
+
la = s_ptr->lm + s_ptr->lg;
|
|
1744
|
+
}
|
|
1745
|
+
return (la);
|
|
1746
|
+
}
|
|
1747
|
+
|
|
1748
|
+
/* ---------------------------------------------------------------------- */
|
|
1749
|
+
LDBLE Phreeqc::
|
|
1750
|
+
log_molality(const char* species_name)
|
|
1751
|
+
/* ---------------------------------------------------------------------- */
|
|
1752
|
+
{
|
|
1753
|
+
class species* s_ptr;
|
|
1754
|
+
LDBLE lm;
|
|
1755
|
+
|
|
1756
|
+
s_ptr = s_search(species_name);
|
|
1757
|
+
|
|
1758
|
+
if (s_ptr == s_eminus)
|
|
1759
|
+
{
|
|
1760
|
+
lm = -99.99;
|
|
1761
|
+
}
|
|
1762
|
+
else if (s_ptr == NULL || s_ptr->in == FALSE)
|
|
1763
|
+
{
|
|
1764
|
+
lm = -99.99;
|
|
1765
|
+
}
|
|
1766
|
+
else if (s_ptr == s_h2o)
|
|
1767
|
+
{
|
|
1768
|
+
lm = log10(s_ptr->moles / mass_water_aq_x);
|
|
1769
|
+
}
|
|
1770
|
+
else
|
|
1771
|
+
{
|
|
1772
|
+
lm = s_ptr->lm;
|
|
1773
|
+
}
|
|
1774
|
+
return (lm);
|
|
1775
|
+
}
|
|
1776
|
+
|
|
1777
|
+
/* ---------------------------------------------------------------------- */
|
|
1778
|
+
LDBLE Phreeqc::
|
|
1779
|
+
molality(const char* species_name)
|
|
1780
|
+
/* ---------------------------------------------------------------------- */
|
|
1781
|
+
{
|
|
1782
|
+
class species* s_ptr;
|
|
1783
|
+
LDBLE m;
|
|
1784
|
+
|
|
1785
|
+
s_ptr = s_search(species_name);
|
|
1786
|
+
if (s_ptr == NULL || s_ptr == s_eminus || s_ptr->in == FALSE)
|
|
1787
|
+
{
|
|
1788
|
+
m = 1e-99;
|
|
1789
|
+
}
|
|
1790
|
+
else
|
|
1791
|
+
{
|
|
1792
|
+
/* m = pow(10., s_ptr->lm); */
|
|
1793
|
+
m = s_ptr->moles / mass_water_aq_x;
|
|
1794
|
+
}
|
|
1795
|
+
return (m);
|
|
1796
|
+
}
|
|
1797
|
+
/* ---------------------------------------------------------------------- */
|
|
1798
|
+
LDBLE Phreeqc::
|
|
1799
|
+
pr_pressure(const char* phase_name)
|
|
1800
|
+
/* ---------------------------------------------------------------------- */
|
|
1801
|
+
{
|
|
1802
|
+
int l;
|
|
1803
|
+
class phase* phase_ptr = phase_bsearch(phase_name, &l, FALSE);
|
|
1804
|
+
if (phase_ptr == NULL)
|
|
1805
|
+
{
|
|
1806
|
+
error_string = sformatf("Gas %s, not found.", phase_name);
|
|
1807
|
+
warning_msg(error_string);
|
|
1808
|
+
return (1e-99);
|
|
1809
|
+
}
|
|
1810
|
+
cxxGasPhase* gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1811
|
+
if (gas_phase_ptr != NULL)
|
|
1812
|
+
{
|
|
1813
|
+
for (size_t i = 0; i < gas_phase_ptr->Get_gas_comps().size(); i++)
|
|
1814
|
+
{
|
|
1815
|
+
const cxxGasComp* gas_comp_ptr = &(gas_phase_ptr->Get_gas_comps()[i]);
|
|
1816
|
+
int j;
|
|
1817
|
+
class phase* phase_ptr_gas = phase_bsearch(gas_comp_ptr->Get_phase_name().c_str(), &j, FALSE);
|
|
1818
|
+
if (phase_ptr == phase_ptr_gas)
|
|
1819
|
+
{
|
|
1820
|
+
if (gas_phase_ptr->Get_pr_in() && phase_ptr->moles_x)
|
|
1821
|
+
{
|
|
1822
|
+
return phase_ptr->pr_p;
|
|
1823
|
+
}
|
|
1824
|
+
else
|
|
1825
|
+
{
|
|
1826
|
+
return gas_comp_ptr->Get_p();
|
|
1827
|
+
}
|
|
1828
|
+
}
|
|
1829
|
+
}
|
|
1830
|
+
}
|
|
1831
|
+
else if (phase_ptr->in != FALSE && phase_ptr->pr_in)
|
|
1832
|
+
{
|
|
1833
|
+
return phase_ptr->pr_p;
|
|
1834
|
+
}
|
|
1835
|
+
return(0.0);
|
|
1836
|
+
}
|
|
1837
|
+
/* ---------------------------------------------------------------------- */
|
|
1838
|
+
LDBLE Phreeqc::
|
|
1839
|
+
pressure(void)
|
|
1840
|
+
/* ---------------------------------------------------------------------- */
|
|
1841
|
+
{
|
|
1842
|
+
return (patm_x);
|
|
1843
|
+
}
|
|
1844
|
+
|
|
1845
|
+
/* ---------------------------------------------------------------------- */
|
|
1846
|
+
LDBLE Phreeqc::
|
|
1847
|
+
pr_phi(const char* phase_name)
|
|
1848
|
+
/* ---------------------------------------------------------------------- */
|
|
1849
|
+
{
|
|
1850
|
+
int l;
|
|
1851
|
+
class phase* phase_ptr = phase_bsearch(phase_name, &l, FALSE);
|
|
1852
|
+
if (phase_ptr == NULL)
|
|
1853
|
+
{
|
|
1854
|
+
error_string = sformatf("Gas %s, not found.", phase_name);
|
|
1855
|
+
warning_msg(error_string);
|
|
1856
|
+
return (1e-99);
|
|
1857
|
+
}
|
|
1858
|
+
cxxGasPhase* gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1859
|
+
if (gas_phase_ptr != NULL)
|
|
1860
|
+
{
|
|
1861
|
+
for (size_t i = 0; i < gas_phase_ptr->Get_gas_comps().size(); i++)
|
|
1862
|
+
{
|
|
1863
|
+
const cxxGasComp* gas_comp_ptr = &(gas_phase_ptr->Get_gas_comps()[i]);
|
|
1864
|
+
int j;
|
|
1865
|
+
class phase* phase_ptr_gas = phase_bsearch(gas_comp_ptr->Get_phase_name().c_str(), &j, FALSE);
|
|
1866
|
+
if (phase_ptr == phase_ptr_gas)
|
|
1867
|
+
{
|
|
1868
|
+
if (gas_phase_ptr->Get_pr_in() && phase_ptr->moles_x)
|
|
1869
|
+
return phase_ptr->pr_phi;
|
|
1870
|
+
else
|
|
1871
|
+
return gas_comp_ptr->Get_phi();
|
|
1872
|
+
}
|
|
1873
|
+
}
|
|
1874
|
+
}
|
|
1875
|
+
else if (phase_ptr->in != FALSE && phase_ptr->pr_in)
|
|
1876
|
+
{
|
|
1877
|
+
return phase_ptr->pr_phi;
|
|
1878
|
+
}
|
|
1879
|
+
return (1.0);
|
|
1880
|
+
}
|
|
1881
|
+
/* ---------------------------------------------------------------------- */
|
|
1882
|
+
LDBLE Phreeqc::
|
|
1883
|
+
saturation_ratio(const char* phase_name)
|
|
1884
|
+
/* ---------------------------------------------------------------------- */
|
|
1885
|
+
{
|
|
1886
|
+
class rxn_token* rxn_ptr;
|
|
1887
|
+
class phase* phase_ptr;
|
|
1888
|
+
int l;
|
|
1889
|
+
LDBLE si, iap;
|
|
1890
|
+
|
|
1891
|
+
iap = 0.0;
|
|
1892
|
+
phase_ptr = phase_bsearch(phase_name, &l, FALSE);
|
|
1893
|
+
if (phase_ptr == NULL)
|
|
1894
|
+
{
|
|
1895
|
+
error_string = sformatf("Mineral %s, not found.", phase_name);
|
|
1896
|
+
warning_msg(error_string);
|
|
1897
|
+
return (1e-99);
|
|
1898
|
+
}
|
|
1899
|
+
else if (phase_ptr->in != FALSE)
|
|
1900
|
+
{
|
|
1901
|
+
for (rxn_ptr = &phase_ptr->rxn_x.token[0] + 1; rxn_ptr->s != NULL;
|
|
1902
|
+
rxn_ptr++)
|
|
1903
|
+
{
|
|
1904
|
+
iap += rxn_ptr->s->la * rxn_ptr->coef;
|
|
1905
|
+
}
|
|
1906
|
+
si = iap - phase_ptr->lk;
|
|
1907
|
+
return (pow((LDBLE)10.0, si));
|
|
1908
|
+
}
|
|
1909
|
+
return (0.0);
|
|
1910
|
+
|
|
1911
|
+
}
|
|
1912
|
+
|
|
1913
|
+
/* ---------------------------------------------------------------------- */
|
|
1914
|
+
int Phreeqc::
|
|
1915
|
+
saturation_index(const char* phase_name, LDBLE* iap, LDBLE* si)
|
|
1916
|
+
/* ---------------------------------------------------------------------- */
|
|
1917
|
+
{
|
|
1918
|
+
class rxn_token* rxn_ptr;
|
|
1919
|
+
class phase* phase_ptr;
|
|
1920
|
+
int l;
|
|
1921
|
+
|
|
1922
|
+
*si = -99.99;
|
|
1923
|
+
*iap = 0.0;
|
|
1924
|
+
phase_ptr = phase_bsearch(phase_name, &l, FALSE);
|
|
1925
|
+
if (phase_ptr == NULL)
|
|
1926
|
+
{
|
|
1927
|
+
error_string = sformatf("Mineral %s, not found.", phase_name);
|
|
1928
|
+
warning_msg(error_string);
|
|
1929
|
+
*si = -99;
|
|
1930
|
+
}
|
|
1931
|
+
else if (phase_ptr->in != FALSE)
|
|
1932
|
+
{
|
|
1933
|
+
for (rxn_ptr = &phase_ptr->rxn_x.token[0] + 1; rxn_ptr->s != NULL;
|
|
1934
|
+
rxn_ptr++)
|
|
1935
|
+
{
|
|
1936
|
+
*iap += rxn_ptr->s->la * rxn_ptr->coef;
|
|
1937
|
+
}
|
|
1938
|
+
*si = *iap - phase_ptr->lk;
|
|
1939
|
+
}
|
|
1940
|
+
else
|
|
1941
|
+
{
|
|
1942
|
+
return (ERROR);
|
|
1943
|
+
}
|
|
1944
|
+
return (OK);
|
|
1945
|
+
}
|
|
1946
|
+
/* ---------------------------------------------------------------------- */
|
|
1947
|
+
LDBLE Phreeqc::
|
|
1948
|
+
sum_match_gases(const char* mytemplate, const char* name)
|
|
1949
|
+
/* ---------------------------------------------------------------------- */
|
|
1950
|
+
{
|
|
1951
|
+
int i;
|
|
1952
|
+
LDBLE tot;
|
|
1953
|
+
const class elt_list* next_elt;
|
|
1954
|
+
|
|
1955
|
+
if (use.Get_gas_phase_in() == FALSE || use.Get_gas_phase_ptr() == NULL)
|
|
1956
|
+
return (0);
|
|
1957
|
+
cxxGasPhase* gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1958
|
+
tot = 0;
|
|
1959
|
+
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
|
|
1960
|
+
{
|
|
1961
|
+
class phase* phase_ptr = phase_bsearch(gas_phase_ptr->Get_gas_comps()[j].Get_phase_name().c_str(),
|
|
1962
|
+
&i, FALSE);
|
|
1963
|
+
if (match_elts_in_species(phase_ptr->formula, mytemplate) == TRUE)
|
|
1964
|
+
{
|
|
1965
|
+
if (name == NULL)
|
|
1966
|
+
{
|
|
1967
|
+
tot += phase_ptr->moles_x;
|
|
1968
|
+
}
|
|
1969
|
+
else
|
|
1970
|
+
{
|
|
1971
|
+
for (next_elt = &phase_ptr->next_elt[0];
|
|
1972
|
+
next_elt->elt != NULL; next_elt++)
|
|
1973
|
+
{
|
|
1974
|
+
if (strcmp(next_elt->elt->name, name) == 0)
|
|
1975
|
+
{
|
|
1976
|
+
tot += next_elt->coef * phase_ptr->moles_x;
|
|
1977
|
+
break;
|
|
1978
|
+
}
|
|
1979
|
+
}
|
|
1980
|
+
}
|
|
1981
|
+
}
|
|
1982
|
+
}
|
|
1983
|
+
return (tot);
|
|
1984
|
+
}
|
|
1985
|
+
|
|
1986
|
+
/* ---------------------------------------------------------------------- */
|
|
1987
|
+
LDBLE Phreeqc::
|
|
1988
|
+
sum_match_species(const char* mytemplate, const char* name)
|
|
1989
|
+
/* ---------------------------------------------------------------------- */
|
|
1990
|
+
{
|
|
1991
|
+
int i;
|
|
1992
|
+
LDBLE tot;
|
|
1993
|
+
const class elt_list* next_elt;
|
|
1994
|
+
|
|
1995
|
+
count_elts = 0;
|
|
1996
|
+
paren_count = 0;
|
|
1997
|
+
tot = 0;
|
|
1998
|
+
if (sum_species_map.find(mytemplate) == sum_species_map.end())
|
|
1999
|
+
{
|
|
2000
|
+
std::vector<std::string> species_list;
|
|
2001
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
2002
|
+
{
|
|
2003
|
+
class species* s_ptr = s_x[i];
|
|
2004
|
+
if (match_elts_in_species(s_ptr->name, mytemplate) == TRUE)
|
|
2005
|
+
{
|
|
2006
|
+
species_list.push_back(s_ptr->name);
|
|
2007
|
+
}
|
|
2008
|
+
}
|
|
2009
|
+
sum_species_map[mytemplate] = species_list;
|
|
2010
|
+
}
|
|
2011
|
+
std::vector<std::string>& species_list = (sum_species_map.find(mytemplate))->second;
|
|
2012
|
+
for (size_t i = 0; i < species_list.size(); i++)
|
|
2013
|
+
{
|
|
2014
|
+
class species* s_ptr = s_search(species_list[i].c_str());
|
|
2015
|
+
if (s_ptr->in == FALSE) continue;
|
|
2016
|
+
if (name == NULL)
|
|
2017
|
+
{
|
|
2018
|
+
tot += s_ptr->moles;
|
|
2019
|
+
}
|
|
2020
|
+
else
|
|
2021
|
+
{
|
|
2022
|
+
for (next_elt = &s_ptr->next_elt[0]; next_elt->elt != NULL;
|
|
2023
|
+
next_elt++)
|
|
2024
|
+
{
|
|
2025
|
+
if (strcmp(next_elt->elt->name, name) == 0)
|
|
2026
|
+
{
|
|
2027
|
+
tot += next_elt->coef * s_ptr->moles;
|
|
2028
|
+
break;
|
|
2029
|
+
}
|
|
2030
|
+
}
|
|
2031
|
+
}
|
|
2032
|
+
}
|
|
2033
|
+
return (tot);
|
|
2034
|
+
}
|
|
2035
|
+
|
|
2036
|
+
|
|
2037
|
+
|
|
2038
|
+
/* ---------------------------------------------------------------------- */
|
|
2039
|
+
LDBLE Phreeqc::
|
|
2040
|
+
sum_match_ss(const char* mytemplate, const char* name)
|
|
2041
|
+
/* ---------------------------------------------------------------------- */
|
|
2042
|
+
{
|
|
2043
|
+
LDBLE tot;
|
|
2044
|
+
const class elt_list* next_elt;
|
|
2045
|
+
|
|
2046
|
+
if (use.Get_ss_assemblage_in() == FALSE || use.Get_ss_assemblage_ptr() == NULL)
|
|
2047
|
+
return (0);
|
|
2048
|
+
tot = 0;
|
|
2049
|
+
std::vector<cxxSS*> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
2050
|
+
for (size_t j = 0; j < ss_ptrs.size(); j++)
|
|
2051
|
+
{
|
|
2052
|
+
cxxSS* ss_ptr = ss_ptrs[j];
|
|
2053
|
+
if (strcmp_nocase(ss_ptr->Get_name().c_str(), mytemplate) == 0)
|
|
2054
|
+
{
|
|
2055
|
+
if (!ss_ptr->Get_ss_in())
|
|
2056
|
+
{
|
|
2057
|
+
tot = 0;
|
|
2058
|
+
break;
|
|
2059
|
+
}
|
|
2060
|
+
for (size_t i = 0; i < ss_ptr->Get_ss_comps().size(); i++)
|
|
2061
|
+
{
|
|
2062
|
+
cxxSScomp* comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
2063
|
+
if (name == NULL)
|
|
2064
|
+
{
|
|
2065
|
+
tot += comp_ptr->Get_moles();
|
|
2066
|
+
}
|
|
2067
|
+
else
|
|
2068
|
+
{
|
|
2069
|
+
int l;
|
|
2070
|
+
class phase* phase_ptr = phase_bsearch(comp_ptr->Get_name().c_str(), &l, FALSE);
|
|
2071
|
+
for (next_elt = &phase_ptr->next_elt[0]; next_elt->elt != NULL; next_elt++)
|
|
2072
|
+
{
|
|
2073
|
+
if (strcmp(next_elt->elt->name, name) == 0)
|
|
2074
|
+
{
|
|
2075
|
+
tot += next_elt->coef * comp_ptr->Get_moles();
|
|
2076
|
+
break;
|
|
2077
|
+
}
|
|
2078
|
+
}
|
|
2079
|
+
}
|
|
2080
|
+
}
|
|
2081
|
+
break;
|
|
2082
|
+
}
|
|
2083
|
+
}
|
|
2084
|
+
return (tot);
|
|
2085
|
+
}
|
|
2086
|
+
|
|
2087
|
+
/* ---------------------------------------------------------------------- */
|
|
2088
|
+
LDBLE Phreeqc::
|
|
2089
|
+
list_ss(std::string ss_name, cxxNameDouble& composition)
|
|
2090
|
+
/* ---------------------------------------------------------------------- */
|
|
2091
|
+
{
|
|
2092
|
+
LDBLE tot = 0;
|
|
2093
|
+
composition.clear();
|
|
2094
|
+
if (use.Get_ss_assemblage_in() == FALSE || use.Get_ss_assemblage_ptr() == NULL)
|
|
2095
|
+
return (0);
|
|
2096
|
+
|
|
2097
|
+
std::vector<cxxSS*> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
2098
|
+
for (size_t j = 0; j < ss_ptrs.size(); j++)
|
|
2099
|
+
{
|
|
2100
|
+
cxxSS* ss_ptr = ss_ptrs[j];
|
|
2101
|
+
if (strcmp_nocase(ss_ptr->Get_name().c_str(), ss_name.c_str()) == 0)
|
|
2102
|
+
{
|
|
2103
|
+
for (size_t i = 0; i < ss_ptr->Get_ss_comps().size(); i++)
|
|
2104
|
+
{
|
|
2105
|
+
cxxSScomp* comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
2106
|
+
composition.add(comp_ptr->Get_name().c_str(), comp_ptr->Get_moles());
|
|
2107
|
+
tot += comp_ptr->Get_moles();
|
|
2108
|
+
}
|
|
2109
|
+
break;
|
|
2110
|
+
}
|
|
2111
|
+
}
|
|
2112
|
+
return (tot);
|
|
2113
|
+
}
|
|
2114
|
+
/* ---------------------------------------------------------------------- */
|
|
2115
|
+
int Phreeqc::
|
|
2116
|
+
match_elts_in_species(const char* name, const char* mytemplate)
|
|
2117
|
+
/* ---------------------------------------------------------------------- */
|
|
2118
|
+
{
|
|
2119
|
+
/*
|
|
2120
|
+
* Makes a list of elements with their coefficients, stores elements
|
|
2121
|
+
* in elt_list at position count_elts. Global variable count_elts is
|
|
2122
|
+
* updated with each stored element. Also uses static global variable
|
|
2123
|
+
* paren_count.
|
|
2124
|
+
*
|
|
2125
|
+
* Arguments:
|
|
2126
|
+
* **t_ptr input, point in token string to start looking
|
|
2127
|
+
* output, is next position to start looking
|
|
2128
|
+
* coef input, coefficient to multiply subscripts by
|
|
2129
|
+
*/
|
|
2130
|
+
int i, i1, l, case_no, match;
|
|
2131
|
+
char c, c1;
|
|
2132
|
+
const char* cptr, * ptr1;
|
|
2133
|
+
LDBLE d;
|
|
2134
|
+
char token[MAX_LENGTH], equal_list[MAX_LENGTH];
|
|
2135
|
+
char token1[MAX_LENGTH], template1[MAX_LENGTH], equal_list1[MAX_LENGTH];
|
|
2136
|
+
char str[2];
|
|
2137
|
+
|
|
2138
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, name);
|
|
2139
|
+
squeeze_white(token);
|
|
2140
|
+
replace("(+", "(", token);
|
|
2141
|
+
if (strstr("token", "++") != NULL)
|
|
2142
|
+
{
|
|
2143
|
+
replace("++++++", "+6", token);
|
|
2144
|
+
replace("+++++", "+5", token);
|
|
2145
|
+
replace("++++", "+4", token);
|
|
2146
|
+
replace("+++", "+3", token);
|
|
2147
|
+
replace("++", "+2", token);
|
|
2148
|
+
}
|
|
2149
|
+
if (strstr("token", "--") != NULL)
|
|
2150
|
+
{
|
|
2151
|
+
replace("------", "-6", token);
|
|
2152
|
+
replace("-----", "-5", token);
|
|
2153
|
+
replace("----", "-4", token);
|
|
2154
|
+
replace("---", "-3", token);
|
|
2155
|
+
replace("--", "-2", token);
|
|
2156
|
+
}
|
|
2157
|
+
|
|
2158
|
+
cptr = token;
|
|
2159
|
+
std::vector< std::pair<std::string, LDBLE> > match_vector;
|
|
2160
|
+
while ((c = *cptr) != '\0')
|
|
2161
|
+
{
|
|
2162
|
+
c1 = *(cptr + 1);
|
|
2163
|
+
str[0] = c;
|
|
2164
|
+
str[1] = '\0';
|
|
2165
|
+
/*
|
|
2166
|
+
* New element
|
|
2167
|
+
*/
|
|
2168
|
+
if (isupper((int)c) || (c == 'e' && c1 == '-') || (c == '['))
|
|
2169
|
+
{
|
|
2170
|
+
/*
|
|
2171
|
+
* Get new element and subscript
|
|
2172
|
+
*/
|
|
2173
|
+
std::string element;
|
|
2174
|
+
if (get_elt(&cptr, element, &l) == ERROR)
|
|
2175
|
+
{
|
|
2176
|
+
return (ERROR);
|
|
2177
|
+
}
|
|
2178
|
+
if (get_num(&cptr, &d) == ERROR)
|
|
2179
|
+
{
|
|
2180
|
+
return (ERROR);
|
|
2181
|
+
}
|
|
2182
|
+
std::pair<std::string, LDBLE> pr(element, d);
|
|
2183
|
+
match_vector.push_back(pr);
|
|
2184
|
+
}
|
|
2185
|
+
else
|
|
2186
|
+
{
|
|
2187
|
+
std::pair<std::string, LDBLE> pr(str, 1.0);
|
|
2188
|
+
match_vector.push_back(pr);
|
|
2189
|
+
cptr += 1;
|
|
2190
|
+
}
|
|
2191
|
+
}
|
|
2192
|
+
/*
|
|
2193
|
+
* Replace elements with first of equivalent elements
|
|
2194
|
+
*/
|
|
2195
|
+
Utilities::strcpy_safe(template1, MAX_LENGTH, mytemplate);
|
|
2196
|
+
squeeze_white(template1);
|
|
2197
|
+
cptr = template1;
|
|
2198
|
+
while (extract_bracket(&cptr, equal_list) == TRUE)
|
|
2199
|
+
{
|
|
2200
|
+
replace("{", "", equal_list);
|
|
2201
|
+
replace("}", "", equal_list);
|
|
2202
|
+
while (replace(",", " ", equal_list) == TRUE);
|
|
2203
|
+
ptr1 = equal_list;
|
|
2204
|
+
/*
|
|
2205
|
+
* Get first name in a list from template
|
|
2206
|
+
*/
|
|
2207
|
+
std::string elt_name;
|
|
2208
|
+
if (copy_token(elt_name, &ptr1) == EMPTY)
|
|
2209
|
+
{
|
|
2210
|
+
error_string = sformatf(
|
|
2211
|
+
"Expecting a nonempty list of element names in isotope sum. %s",
|
|
2212
|
+
mytemplate);
|
|
2213
|
+
error_msg(error_string, CONTINUE);
|
|
2214
|
+
return (ERROR);
|
|
2215
|
+
}
|
|
2216
|
+
std::string replace_name = elt_name;
|
|
2217
|
+
/*
|
|
2218
|
+
* Replace in species all equivalent names from template
|
|
2219
|
+
*/
|
|
2220
|
+
while (copy_token(elt_name, &ptr1) != EMPTY)
|
|
2221
|
+
{
|
|
2222
|
+
for (i = 0; i < (int)match_vector.size(); i++)
|
|
2223
|
+
{
|
|
2224
|
+
if (elt_name == match_vector[i].first)
|
|
2225
|
+
{
|
|
2226
|
+
match_vector[i].first = replace_name;
|
|
2227
|
+
}
|
|
2228
|
+
}
|
|
2229
|
+
}
|
|
2230
|
+
}
|
|
2231
|
+
/*
|
|
2232
|
+
* Combine contiguous elements
|
|
2233
|
+
*/
|
|
2234
|
+
i1 = 0;
|
|
2235
|
+
for (i = 1; i < (int)match_vector.size(); i++)
|
|
2236
|
+
{
|
|
2237
|
+
if ((isupper((int)(match_vector[i].first[0])) != FALSE)
|
|
2238
|
+
&& (match_vector[i].first == match_vector[i1].first))
|
|
2239
|
+
{
|
|
2240
|
+
match_vector[i1].second += match_vector[i].second;
|
|
2241
|
+
}
|
|
2242
|
+
else
|
|
2243
|
+
{
|
|
2244
|
+
i1++;
|
|
2245
|
+
match_vector[i1].first = match_vector[i].first;
|
|
2246
|
+
match_vector[i1].second = match_vector[i].second;
|
|
2247
|
+
}
|
|
2248
|
+
}
|
|
2249
|
+
int count_match_tokens = i1 + 1;
|
|
2250
|
+
/*
|
|
2251
|
+
* write out string
|
|
2252
|
+
*/
|
|
2253
|
+
token[0] = '\0';
|
|
2254
|
+
for (i = 0; i < count_match_tokens; i++)
|
|
2255
|
+
{
|
|
2256
|
+
Utilities::strcat_safe(token, MAX_LENGTH, match_vector[i].first.c_str());
|
|
2257
|
+
if (match_vector[i].second != 1.0)
|
|
2258
|
+
{
|
|
2259
|
+
snprintf(token1, sizeof(token1), "%g", (double)match_vector[i].second);
|
|
2260
|
+
Utilities::strcat_safe(token, MAX_LENGTH, token1);
|
|
2261
|
+
}
|
|
2262
|
+
}
|
|
2263
|
+
/*
|
|
2264
|
+
* Write a template name using first of equivalent elements
|
|
2265
|
+
*/
|
|
2266
|
+
Utilities::strcpy_safe(template1, MAX_LENGTH, mytemplate);
|
|
2267
|
+
squeeze_white(template1);
|
|
2268
|
+
cptr = template1;
|
|
2269
|
+
while (extract_bracket(&cptr, equal_list) == TRUE)
|
|
2270
|
+
{
|
|
2271
|
+
Utilities::strcpy_safe(equal_list1, MAX_LENGTH, equal_list);
|
|
2272
|
+
replace("{", "", equal_list);
|
|
2273
|
+
replace("}", "", equal_list);
|
|
2274
|
+
while (replace(",", " ", equal_list) == TRUE);
|
|
2275
|
+
ptr1 = equal_list;
|
|
2276
|
+
/*
|
|
2277
|
+
* Get first name in a list
|
|
2278
|
+
*/
|
|
2279
|
+
std::string elt_name;
|
|
2280
|
+
if (copy_token(elt_name, &ptr1) == EMPTY)
|
|
2281
|
+
{
|
|
2282
|
+
error_string = sformatf(
|
|
2283
|
+
"Expecting a nonempty list of element names in isotope sum. %s",
|
|
2284
|
+
mytemplate);
|
|
2285
|
+
error_msg(error_string, CONTINUE);
|
|
2286
|
+
return (ERROR);
|
|
2287
|
+
}
|
|
2288
|
+
replace(equal_list1, elt_name.c_str(), template1);
|
|
2289
|
+
squeeze_white(template1);
|
|
2290
|
+
cptr = template1;
|
|
2291
|
+
}
|
|
2292
|
+
/*
|
|
2293
|
+
* Compare string
|
|
2294
|
+
*/
|
|
2295
|
+
/* Cases: 0 exact match
|
|
2296
|
+
* 1 leading wild card
|
|
2297
|
+
* 2 trailing wild card
|
|
2298
|
+
* 3 leading and trailing wild card
|
|
2299
|
+
*/
|
|
2300
|
+
case_no = 0;
|
|
2301
|
+
if (template1[0] == '*')
|
|
2302
|
+
case_no = 1;
|
|
2303
|
+
l = (int)strlen(template1);
|
|
2304
|
+
if (template1[l - 1] == '*')
|
|
2305
|
+
{
|
|
2306
|
+
if (case_no != 1)
|
|
2307
|
+
{
|
|
2308
|
+
case_no = 2;
|
|
2309
|
+
}
|
|
2310
|
+
else
|
|
2311
|
+
{
|
|
2312
|
+
case_no = 3;
|
|
2313
|
+
}
|
|
2314
|
+
}
|
|
2315
|
+
while (replace("*", "", template1));
|
|
2316
|
+
match = FALSE;
|
|
2317
|
+
switch (case_no)
|
|
2318
|
+
{
|
|
2319
|
+
case 0:
|
|
2320
|
+
/* exact match */
|
|
2321
|
+
if (strcmp(token, template1) == 0)
|
|
2322
|
+
match = TRUE;
|
|
2323
|
+
break;
|
|
2324
|
+
case 1:
|
|
2325
|
+
/* leading wild card */
|
|
2326
|
+
if ((cptr = strstr(token, template1)) == NULL)
|
|
2327
|
+
{
|
|
2328
|
+
match = FALSE;
|
|
2329
|
+
}
|
|
2330
|
+
else
|
|
2331
|
+
{
|
|
2332
|
+
if (strcmp(cptr, template1) == 0)
|
|
2333
|
+
match = TRUE;
|
|
2334
|
+
}
|
|
2335
|
+
break;
|
|
2336
|
+
case 2:
|
|
2337
|
+
/* trailing wild card */
|
|
2338
|
+
if (strstr(token, template1) == token)
|
|
2339
|
+
match = TRUE;
|
|
2340
|
+
break;
|
|
2341
|
+
case 3:
|
|
2342
|
+
/* trailing wild card */
|
|
2343
|
+
if (strstr(token, template1) != NULL)
|
|
2344
|
+
match = TRUE;
|
|
2345
|
+
break;
|
|
2346
|
+
}
|
|
2347
|
+
return (match);
|
|
2348
|
+
}
|
|
2349
|
+
|
|
2350
|
+
/* ---------------------------------------------------------------------- */
|
|
2351
|
+
int Phreeqc::
|
|
2352
|
+
extract_bracket(const char** string, char* bracket_string)
|
|
2353
|
+
/* ---------------------------------------------------------------------- */
|
|
2354
|
+
{
|
|
2355
|
+
const char* cptr;
|
|
2356
|
+
char* ptr1;
|
|
2357
|
+
|
|
2358
|
+
if ((cptr = strstr(*string, "{")) == NULL)
|
|
2359
|
+
return (FALSE);
|
|
2360
|
+
strcpy(bracket_string, cptr);
|
|
2361
|
+
if ((ptr1 = strstr(bracket_string, "}")) == NULL)
|
|
2362
|
+
{
|
|
2363
|
+
error_string = sformatf(
|
|
2364
|
+
"No matching bracket (}) in isotope template string %s",
|
|
2365
|
+
*string);
|
|
2366
|
+
error_msg(error_string, CONTINUE);
|
|
2367
|
+
input_error++;
|
|
2368
|
+
return (FALSE);
|
|
2369
|
+
}
|
|
2370
|
+
ptr1[1] = '\0';
|
|
2371
|
+
*string = strstr(*string, "}");
|
|
2372
|
+
*string += 1;
|
|
2373
|
+
return (TRUE);
|
|
2374
|
+
}
|
|
2375
|
+
/* ---------------------------------------------------------------------- */
|
|
2376
|
+
LDBLE Phreeqc::
|
|
2377
|
+
surf_total(const char* total_name, const char* surface_name)
|
|
2378
|
+
/* ---------------------------------------------------------------------- */
|
|
2379
|
+
{
|
|
2380
|
+
/*
|
|
2381
|
+
* Provides total moles in LDBLE layer
|
|
2382
|
+
*/
|
|
2383
|
+
int j;
|
|
2384
|
+
|
|
2385
|
+
if (use.Get_surface_ptr() == NULL || surface_name == NULL || total_name == NULL)
|
|
2386
|
+
return (0);
|
|
2387
|
+
|
|
2388
|
+
bool redox = false;
|
|
2389
|
+
if (strstr(total_name, "(") != NULL)
|
|
2390
|
+
{
|
|
2391
|
+
redox = true;
|
|
2392
|
+
}
|
|
2393
|
+
if (!redox)
|
|
2394
|
+
{
|
|
2395
|
+
if (strcmp(total_name, "H") == 0 || strcmp(total_name, "O") == 0)
|
|
2396
|
+
{
|
|
2397
|
+
return surf_total_no_redox(total_name, surface_name);
|
|
2398
|
+
}
|
|
2399
|
+
}
|
|
2400
|
+
/*
|
|
2401
|
+
* Find surface...
|
|
2402
|
+
*/
|
|
2403
|
+
for (j = 0; j < count_unknowns; j++)
|
|
2404
|
+
{
|
|
2405
|
+
if (x[j]->type != SURFACE)
|
|
2406
|
+
continue;
|
|
2407
|
+
|
|
2408
|
+
std::string token;
|
|
2409
|
+
token = x[j]->master[0]->elt->name;
|
|
2410
|
+
replace("_", " ", token);
|
|
2411
|
+
std::string::iterator b = token.begin();
|
|
2412
|
+
std::string::iterator e = token.end();
|
|
2413
|
+
std::string name;
|
|
2414
|
+
CParser::copy_token(name, b, e);
|
|
2415
|
+
if (strcmp(name.c_str(), surface_name) == 0)
|
|
2416
|
+
break;
|
|
2417
|
+
}
|
|
2418
|
+
if (j >= count_unknowns)
|
|
2419
|
+
return (0);
|
|
2420
|
+
/*
|
|
2421
|
+
* find total moles for redox state
|
|
2422
|
+
*/
|
|
2423
|
+
LDBLE t = 0;
|
|
2424
|
+
for (j = 0; j < (int)this->s_x.size(); j++)
|
|
2425
|
+
{
|
|
2426
|
+
if (s_x[j]->type != SURF)
|
|
2427
|
+
continue;
|
|
2428
|
+
|
|
2429
|
+
std::string token;
|
|
2430
|
+
bool match = false;
|
|
2431
|
+
|
|
2432
|
+
// find if surface matches
|
|
2433
|
+
for (int i = 0; s_x[j]->next_elt[i].elt != NULL; i++)
|
|
2434
|
+
{
|
|
2435
|
+
if (s_x[j]->next_elt[i].elt->master->type != SURF) continue;
|
|
2436
|
+
|
|
2437
|
+
token = s_x[j]->next_elt[i].elt->name;
|
|
2438
|
+
replace("_", " ", token);
|
|
2439
|
+
std::string::iterator b = token.begin();
|
|
2440
|
+
std::string::iterator e = token.end();
|
|
2441
|
+
std::string name;
|
|
2442
|
+
CParser::copy_token(name, b, e);
|
|
2443
|
+
if (strcmp(name.c_str(), surface_name) == 0)
|
|
2444
|
+
{
|
|
2445
|
+
match = true;
|
|
2446
|
+
break;
|
|
2447
|
+
}
|
|
2448
|
+
}
|
|
2449
|
+
if (!match) continue;
|
|
2450
|
+
|
|
2451
|
+
// surface matches, now match element or redox state
|
|
2452
|
+
class rxn_token* rxn_ptr;
|
|
2453
|
+
if (s_x[j]->mole_balance == NULL)
|
|
2454
|
+
{
|
|
2455
|
+
for (rxn_ptr = &s_x[j]->rxn_s.token[0] + 1; rxn_ptr->s != NULL; rxn_ptr++)
|
|
2456
|
+
{
|
|
2457
|
+
if (redox && rxn_ptr->s->secondary)
|
|
2458
|
+
{
|
|
2459
|
+
token = rxn_ptr->s->secondary->elt->name;
|
|
2460
|
+
}
|
|
2461
|
+
else if (!redox && rxn_ptr->s->secondary)
|
|
2462
|
+
{
|
|
2463
|
+
token = rxn_ptr->s->secondary->elt->primary->elt->name;
|
|
2464
|
+
}
|
|
2465
|
+
else if (!redox && rxn_ptr->s->primary)
|
|
2466
|
+
{
|
|
2467
|
+
token = rxn_ptr->s->primary->elt->name;
|
|
2468
|
+
}
|
|
2469
|
+
else
|
|
2470
|
+
{
|
|
2471
|
+
continue;
|
|
2472
|
+
}
|
|
2473
|
+
if (strcmp(token.c_str(), total_name) == 0)
|
|
2474
|
+
{
|
|
2475
|
+
t += rxn_ptr->coef * s_x[j]->moles;
|
|
2476
|
+
break;
|
|
2477
|
+
}
|
|
2478
|
+
else
|
|
2479
|
+
// sum all sites in case total_name is a surface name without underscore surf ("Hfo_w", "Hfo")
|
|
2480
|
+
{
|
|
2481
|
+
if (rxn_ptr->s->type == SURF)
|
|
2482
|
+
{
|
|
2483
|
+
if (token.find("_") != std::string::npos)
|
|
2484
|
+
{
|
|
2485
|
+
token = token.substr(0, token.find("_"));
|
|
2486
|
+
}
|
|
2487
|
+
if (strcmp(token.c_str(), total_name) == 0)
|
|
2488
|
+
{
|
|
2489
|
+
t += rxn_ptr->coef * s_x[j]->moles;
|
|
2490
|
+
break;
|
|
2491
|
+
}
|
|
2492
|
+
}
|
|
2493
|
+
}
|
|
2494
|
+
}
|
|
2495
|
+
}
|
|
2496
|
+
else
|
|
2497
|
+
{
|
|
2498
|
+
for (int i = 0; s_x[j]->next_secondary[i].elt != NULL; i++)
|
|
2499
|
+
{
|
|
2500
|
+
token = s_x[j]->next_secondary[i].elt->name;
|
|
2501
|
+
if (strcmp(token.c_str(), total_name) == 0)
|
|
2502
|
+
{
|
|
2503
|
+
t += s_x[j]->next_secondary[i].coef * s_x[j]->moles;
|
|
2504
|
+
break;
|
|
2505
|
+
}
|
|
2506
|
+
}
|
|
2507
|
+
}
|
|
2508
|
+
}
|
|
2509
|
+
return t;
|
|
2510
|
+
}
|
|
2511
|
+
|
|
2512
|
+
/* ---------------------------------------------------------------------- */
|
|
2513
|
+
LDBLE Phreeqc::
|
|
2514
|
+
surf_total_no_redox(const char* total_name, const char* surface_name)
|
|
2515
|
+
/* ---------------------------------------------------------------------- */
|
|
2516
|
+
{
|
|
2517
|
+
/*
|
|
2518
|
+
* Provides total moles in LDBLE layer
|
|
2519
|
+
*/
|
|
2520
|
+
int i, j, k;
|
|
2521
|
+
char name[MAX_LENGTH], token[MAX_LENGTH];
|
|
2522
|
+
char surface_name_local[MAX_LENGTH];
|
|
2523
|
+
const char* cptr;
|
|
2524
|
+
|
|
2525
|
+
if (use.Get_surface_ptr() == NULL)
|
|
2526
|
+
return (0);
|
|
2527
|
+
|
|
2528
|
+
/*
|
|
2529
|
+
* Find surface...
|
|
2530
|
+
*/
|
|
2531
|
+
for (j = 0; j < count_unknowns; j++)
|
|
2532
|
+
{
|
|
2533
|
+
if (x[j]->type != SURFACE)
|
|
2534
|
+
continue;
|
|
2535
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, x[j]->master[0]->elt->name);
|
|
2536
|
+
replace("_", " ", token);
|
|
2537
|
+
cptr = token;
|
|
2538
|
+
copy_token(name, &cptr, &k);
|
|
2539
|
+
if (surface_name != NULL)
|
|
2540
|
+
{
|
|
2541
|
+
if (strcmp(name, surface_name) == 0)
|
|
2542
|
+
break;
|
|
2543
|
+
}
|
|
2544
|
+
else
|
|
2545
|
+
{
|
|
2546
|
+
break;
|
|
2547
|
+
}
|
|
2548
|
+
}
|
|
2549
|
+
if (j >= count_unknowns)
|
|
2550
|
+
return (0);
|
|
2551
|
+
Utilities::strcpy_safe(surface_name_local, MAX_LENGTH, name);
|
|
2552
|
+
/*
|
|
2553
|
+
* find total moles of each element in diffuse layer...
|
|
2554
|
+
*/
|
|
2555
|
+
count_elts = 0;
|
|
2556
|
+
paren_count = 0;
|
|
2557
|
+
for (j = 0; j < (int)this->s_x.size(); j++)
|
|
2558
|
+
{
|
|
2559
|
+
if (s_x[j]->type != SURF)
|
|
2560
|
+
continue;
|
|
2561
|
+
for (i = 0; s_x[j]->next_elt[i].elt != NULL; i++)
|
|
2562
|
+
{
|
|
2563
|
+
if (s_x[j]->next_elt[i].elt->master->type != SURF) continue;
|
|
2564
|
+
|
|
2565
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, s_x[j]->next_elt[i].elt->name);
|
|
2566
|
+
replace("_", " ", token);
|
|
2567
|
+
cptr = token;
|
|
2568
|
+
copy_token(name, &cptr, &k);
|
|
2569
|
+
if (strcmp(name, surface_name_local) == 0)
|
|
2570
|
+
{
|
|
2571
|
+
/*
|
|
2572
|
+
* Accumulate elements in diffuse layer
|
|
2573
|
+
*/
|
|
2574
|
+
add_elt_list(s_x[j]->next_elt, s_x[j]->moles);
|
|
2575
|
+
//fprintf(stderr, "%15s\t%e\t%s\t%s\n", s_x[j]->name, s_x[j]->moles, name, surface_name_local );
|
|
2576
|
+
break;
|
|
2577
|
+
}
|
|
2578
|
+
}
|
|
2579
|
+
}
|
|
2580
|
+
elt_list_combine();
|
|
2581
|
+
/*
|
|
2582
|
+
* Return totals
|
|
2583
|
+
*/
|
|
2584
|
+
for (j = 0; j < count_elts; j++)
|
|
2585
|
+
{
|
|
2586
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
2587
|
+
{
|
|
2588
|
+
return ((LDBLE)elt_list[j].coef);
|
|
2589
|
+
}
|
|
2590
|
+
}
|
|
2591
|
+
return (0);
|
|
2592
|
+
}
|
|
2593
|
+
/* ---------------------------------------------------------------------- */
|
|
2594
|
+
LDBLE Phreeqc::
|
|
2595
|
+
total(const char* total_name)
|
|
2596
|
+
/* ---------------------------------------------------------------------- */
|
|
2597
|
+
{
|
|
2598
|
+
class master* master_ptr;
|
|
2599
|
+
LDBLE t;
|
|
2600
|
+
|
|
2601
|
+
if (strcmp(total_name, "H") == 0)
|
|
2602
|
+
{
|
|
2603
|
+
return (total_h_x / mass_water_aq_x);
|
|
2604
|
+
}
|
|
2605
|
+
if (strcmp(total_name, "O") == 0)
|
|
2606
|
+
{
|
|
2607
|
+
return (total_o_x / mass_water_aq_x);
|
|
2608
|
+
}
|
|
2609
|
+
std::string noplus = total_name;
|
|
2610
|
+
replace(noplus, "(+", "(");
|
|
2611
|
+
master_ptr = master_bsearch(noplus.c_str());
|
|
2612
|
+
t = 0.0;
|
|
2613
|
+
if (master_ptr == NULL)
|
|
2614
|
+
{
|
|
2615
|
+
if (strcmp_nocase(total_name, "water") == 0)
|
|
2616
|
+
{
|
|
2617
|
+
return (mass_water_aq_x);
|
|
2618
|
+
}
|
|
2619
|
+
else if (strcmp_nocase(total_name, "charge") == 0)
|
|
2620
|
+
{
|
|
2621
|
+
return (cb_x / mass_water_aq_x);
|
|
2622
|
+
}
|
|
2623
|
+
/*
|
|
2624
|
+
sprintf (error_string, "Cannot find definition for master species, %s.",
|
|
2625
|
+
total_name);
|
|
2626
|
+
warning_msg (error_string);
|
|
2627
|
+
*/
|
|
2628
|
+
}
|
|
2629
|
+
/*
|
|
2630
|
+
* Primary master species
|
|
2631
|
+
*/
|
|
2632
|
+
else if (master_ptr->primary == TRUE)
|
|
2633
|
+
{
|
|
2634
|
+
/*
|
|
2635
|
+
* Not a redox element
|
|
2636
|
+
*/
|
|
2637
|
+
if (master_ptr->s->secondary == NULL)
|
|
2638
|
+
{
|
|
2639
|
+
t = master_ptr->total / mass_water_aq_x;
|
|
2640
|
+
/*
|
|
2641
|
+
* Redox element, need to sum totals of all redox states
|
|
2642
|
+
*/
|
|
2643
|
+
}
|
|
2644
|
+
else
|
|
2645
|
+
{
|
|
2646
|
+
t = 0;
|
|
2647
|
+
for (size_t i = master_ptr->number + 1;
|
|
2648
|
+
(i < (int)master.size() && master[i]->elt->primary == master_ptr);
|
|
2649
|
+
i++)
|
|
2650
|
+
{
|
|
2651
|
+
t += master[i]->total / mass_water_aq_x;
|
|
2652
|
+
}
|
|
2653
|
+
}
|
|
2654
|
+
}
|
|
2655
|
+
/*
|
|
2656
|
+
* Secondary master species
|
|
2657
|
+
*/
|
|
2658
|
+
else
|
|
2659
|
+
{
|
|
2660
|
+
t = master_ptr->total / mass_water_aq_x;
|
|
2661
|
+
}
|
|
2662
|
+
return (t);
|
|
2663
|
+
}
|
|
2664
|
+
/* ---------------------------------------------------------------------- */
|
|
2665
|
+
LDBLE Phreeqc::
|
|
2666
|
+
total_mole(const char* total_name)
|
|
2667
|
+
/* ---------------------------------------------------------------------- */
|
|
2668
|
+
{
|
|
2669
|
+
class master* master_ptr;
|
|
2670
|
+
LDBLE t;
|
|
2671
|
+
|
|
2672
|
+
if (strcmp(total_name, "H") == 0)
|
|
2673
|
+
{
|
|
2674
|
+
return (total_h_x);
|
|
2675
|
+
}
|
|
2676
|
+
if (strcmp(total_name, "O") == 0)
|
|
2677
|
+
{
|
|
2678
|
+
return (total_o_x);
|
|
2679
|
+
}
|
|
2680
|
+
std::string noplus = total_name;
|
|
2681
|
+
replace(noplus, "(+", "(");
|
|
2682
|
+
master_ptr = master_bsearch(noplus.c_str());
|
|
2683
|
+
t = 0.0;
|
|
2684
|
+
if (master_ptr == NULL)
|
|
2685
|
+
{
|
|
2686
|
+
if (strcmp_nocase(total_name, "water") == 0)
|
|
2687
|
+
{
|
|
2688
|
+
return (mass_water_aq_x / gfw_water);
|
|
2689
|
+
}
|
|
2690
|
+
else if (strcmp_nocase(total_name, "charge") == 0)
|
|
2691
|
+
{
|
|
2692
|
+
return (cb_x);
|
|
2693
|
+
}
|
|
2694
|
+
/*
|
|
2695
|
+
sprintf (error_string, "Cannot find definition for master species, %s.",
|
|
2696
|
+
total_name);
|
|
2697
|
+
warning_msg (error_string);
|
|
2698
|
+
*/
|
|
2699
|
+
}
|
|
2700
|
+
/*
|
|
2701
|
+
* Primary master species
|
|
2702
|
+
*/
|
|
2703
|
+
else if (master_ptr->primary == TRUE)
|
|
2704
|
+
{
|
|
2705
|
+
/*
|
|
2706
|
+
* Not a redox element
|
|
2707
|
+
*/
|
|
2708
|
+
if (master_ptr->s->secondary == NULL)
|
|
2709
|
+
{
|
|
2710
|
+
t = master_ptr->total;
|
|
2711
|
+
/*
|
|
2712
|
+
* Redox element, need to sum totals of all redox states
|
|
2713
|
+
*/
|
|
2714
|
+
}
|
|
2715
|
+
else
|
|
2716
|
+
{
|
|
2717
|
+
t = 0;
|
|
2718
|
+
for (size_t i = master_ptr->number + 1;
|
|
2719
|
+
(i < master.size() && master[i]->elt->primary == master_ptr);
|
|
2720
|
+
i++)
|
|
2721
|
+
{
|
|
2722
|
+
t += master[i]->total;
|
|
2723
|
+
}
|
|
2724
|
+
}
|
|
2725
|
+
}
|
|
2726
|
+
/*
|
|
2727
|
+
* Secondary master species
|
|
2728
|
+
*/
|
|
2729
|
+
else
|
|
2730
|
+
{
|
|
2731
|
+
t = master_ptr->total;
|
|
2732
|
+
}
|
|
2733
|
+
return (t);
|
|
2734
|
+
}
|
|
2735
|
+
|
|
2736
|
+
/* ---------------------------------------------------------------------- */
|
|
2737
|
+
int Phreeqc::
|
|
2738
|
+
get_edl_species(cxxSurfaceCharge& charge_ref)
|
|
2739
|
+
/* ---------------------------------------------------------------------- */
|
|
2740
|
+
{
|
|
2741
|
+
|
|
2742
|
+
double mass_water_surface = charge_ref.Get_mass_water();
|
|
2743
|
+
sys.clear();
|
|
2744
|
+
for (int j = 0; j < (int)this->s_x.size(); j++)
|
|
2745
|
+
{
|
|
2746
|
+
if (s_x[j]->type == H2O)
|
|
2747
|
+
{
|
|
2748
|
+
size_t count_sys = sys.size();
|
|
2749
|
+
sys.resize(count_sys + 1);
|
|
2750
|
+
sys[count_sys].name = string_duplicate(s_x[j]->name);
|
|
2751
|
+
sys[count_sys].moles = mass_water_surface / gfw_water;
|
|
2752
|
+
sys_tot += sys[count_sys].moles;
|
|
2753
|
+
count_sys++;
|
|
2754
|
+
}
|
|
2755
|
+
else if (s_x[j]->type < H2O)
|
|
2756
|
+
{
|
|
2757
|
+
size_t count_sys = sys.size();
|
|
2758
|
+
sys.resize(count_sys + 1);
|
|
2759
|
+
double molality = under(s_x[j]->lm);
|
|
2760
|
+
double moles_excess = mass_water_aq_x * molality * charge_ref.Get_g_map()[s_x[j]->z].Get_g();
|
|
2761
|
+
double moles_surface = mass_water_surface * molality + moles_excess;
|
|
2762
|
+
sys[count_sys].name = string_duplicate(s_x[j]->name);
|
|
2763
|
+
sys[count_sys].moles = moles_surface;
|
|
2764
|
+
sys_tot += sys[count_sys].moles;
|
|
2765
|
+
count_sys++;
|
|
2766
|
+
}
|
|
2767
|
+
else
|
|
2768
|
+
{
|
|
2769
|
+
continue;
|
|
2770
|
+
}
|
|
2771
|
+
}
|
|
2772
|
+
return (OK);
|
|
2773
|
+
}
|
|
2774
|
+
/* ---------------------------------------------------------------------- */
|
|
2775
|
+
LDBLE Phreeqc::
|
|
2776
|
+
edl_species(const char* surf_name, LDBLE* count, char*** names, LDBLE** moles, LDBLE* area, LDBLE* thickness)
|
|
2777
|
+
/* ---------------------------------------------------------------------- */
|
|
2778
|
+
{
|
|
2779
|
+
/*
|
|
2780
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
2781
|
+
*/
|
|
2782
|
+
int i;
|
|
2783
|
+
sys_tot = 0;
|
|
2784
|
+
sys.clear();
|
|
2785
|
+
if (!(dl_type_x == cxxSurface::NO_DL))
|
|
2786
|
+
{
|
|
2787
|
+
cxxSurface* surface_ptr = use.Get_surface_ptr();
|
|
2788
|
+
for (size_t i = 0; i < surface_ptr->Get_surface_charges().size(); i++)
|
|
2789
|
+
{
|
|
2790
|
+
cxxSurfaceCharge& charge_ref = surface_ptr->Get_surface_charges()[i];
|
|
2791
|
+
if (strcmp(charge_ref.Get_name().c_str(), surf_name) == 0)
|
|
2792
|
+
{
|
|
2793
|
+
get_edl_species(charge_ref);
|
|
2794
|
+
*area = charge_ref.Get_specific_area() * charge_ref.Get_grams();
|
|
2795
|
+
*thickness = surface_ptr->Get_thickness();
|
|
2796
|
+
break;
|
|
2797
|
+
}
|
|
2798
|
+
}
|
|
2799
|
+
}
|
|
2800
|
+
/*
|
|
2801
|
+
* Sort system species
|
|
2802
|
+
*/
|
|
2803
|
+
if (sys.size() > 1)
|
|
2804
|
+
{
|
|
2805
|
+
qsort(&sys[0], sys.size(),
|
|
2806
|
+
sizeof(class system_species), system_species_compare);
|
|
2807
|
+
}
|
|
2808
|
+
/*
|
|
2809
|
+
* malloc space
|
|
2810
|
+
*/
|
|
2811
|
+
*names = (char**)PHRQ_malloc((sys.size() + 1) * sizeof(char*));
|
|
2812
|
+
if (names == NULL)
|
|
2813
|
+
malloc_error();
|
|
2814
|
+
*moles = (LDBLE*)PHRQ_malloc((sys.size() + 1) * sizeof(LDBLE));
|
|
2815
|
+
if (*moles == NULL)
|
|
2816
|
+
malloc_error();
|
|
2817
|
+
|
|
2818
|
+
(*names)[0] = NULL;
|
|
2819
|
+
(*moles)[0] = 0;
|
|
2820
|
+
for (i = 0; i < (int)sys.size(); i++)
|
|
2821
|
+
{
|
|
2822
|
+
(*names)[i + 1] = sys[i].name;
|
|
2823
|
+
(*moles)[i + 1] = sys[i].moles;
|
|
2824
|
+
}
|
|
2825
|
+
*count = (LDBLE)sys.size();
|
|
2826
|
+
|
|
2827
|
+
//PHRQ_free(sys);
|
|
2828
|
+
sys.clear();
|
|
2829
|
+
return (sys_tot);
|
|
2830
|
+
}
|
|
2831
|
+
/* ---------------------------------------------------------------------- */
|
|
2832
|
+
LDBLE Phreeqc::
|
|
2833
|
+
system_total(const char* total_name, LDBLE* count, char*** names,
|
|
2834
|
+
char*** types, LDBLE** moles, int isort)
|
|
2835
|
+
/* ---------------------------------------------------------------------- */
|
|
2836
|
+
{
|
|
2837
|
+
/*
|
|
2838
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
2839
|
+
*/
|
|
2840
|
+
int i;
|
|
2841
|
+
|
|
2842
|
+
sys_tot = 0;
|
|
2843
|
+
sys.clear();
|
|
2844
|
+
if (strcmp_nocase(total_name, "elements") == 0)
|
|
2845
|
+
{
|
|
2846
|
+
system_total_elements();
|
|
2847
|
+
}
|
|
2848
|
+
else if (strcmp_nocase(total_name, "phases") == 0)
|
|
2849
|
+
{
|
|
2850
|
+
system_total_si();
|
|
2851
|
+
}
|
|
2852
|
+
else if (strcmp_nocase(total_name, "aq") == 0)
|
|
2853
|
+
{
|
|
2854
|
+
system_total_aq();
|
|
2855
|
+
}
|
|
2856
|
+
else if (strcmp_nocase(total_name, "ex") == 0)
|
|
2857
|
+
{
|
|
2858
|
+
system_total_ex();
|
|
2859
|
+
}
|
|
2860
|
+
else if (strcmp_nocase(total_name, "surf") == 0)
|
|
2861
|
+
{
|
|
2862
|
+
system_total_surf();
|
|
2863
|
+
}
|
|
2864
|
+
else if (strcmp_nocase(total_name, "s_s") == 0)
|
|
2865
|
+
{
|
|
2866
|
+
system_total_ss();
|
|
2867
|
+
}
|
|
2868
|
+
else if (strcmp_nocase(total_name, "gas") == 0)
|
|
2869
|
+
{
|
|
2870
|
+
system_total_gas();
|
|
2871
|
+
}
|
|
2872
|
+
else if (strcmp_nocase(total_name, "equi") == 0)
|
|
2873
|
+
{
|
|
2874
|
+
system_total_equi();
|
|
2875
|
+
}
|
|
2876
|
+
else if (strcmp_nocase(total_name, "kin") == 0)
|
|
2877
|
+
{
|
|
2878
|
+
system_total_kin();
|
|
2879
|
+
}
|
|
2880
|
+
else
|
|
2881
|
+
{
|
|
2882
|
+
if (strstr(total_name, "(") == NULL)
|
|
2883
|
+
{
|
|
2884
|
+
system_total_elt(total_name);
|
|
2885
|
+
}
|
|
2886
|
+
else
|
|
2887
|
+
{
|
|
2888
|
+
system_total_elt_secondary(total_name);
|
|
2889
|
+
}
|
|
2890
|
+
}
|
|
2891
|
+
/*
|
|
2892
|
+
* Sort system species
|
|
2893
|
+
*/
|
|
2894
|
+
if (sys.size() > 1 && isort == 0)
|
|
2895
|
+
{
|
|
2896
|
+
qsort(&sys[0], sys.size(),
|
|
2897
|
+
sizeof(class system_species), system_species_compare);
|
|
2898
|
+
}
|
|
2899
|
+
else if (sys.size() > 1)
|
|
2900
|
+
{
|
|
2901
|
+
qsort(&sys[0], sys.size(),
|
|
2902
|
+
sizeof(class system_species), system_species_compare_name);
|
|
2903
|
+
}
|
|
2904
|
+
/*
|
|
2905
|
+
* malloc space
|
|
2906
|
+
*/
|
|
2907
|
+
size_t count_sys = sys.size();
|
|
2908
|
+
*names = (char**)PHRQ_malloc((count_sys + 1) * sizeof(char*));
|
|
2909
|
+
if (*names == NULL)
|
|
2910
|
+
malloc_error();
|
|
2911
|
+
*types = (char**)PHRQ_malloc((count_sys + 1) * sizeof(char*));
|
|
2912
|
+
if (*types == NULL)
|
|
2913
|
+
malloc_error();
|
|
2914
|
+
*moles = (LDBLE*)PHRQ_malloc((count_sys + 1) * sizeof(LDBLE));
|
|
2915
|
+
if (*moles == NULL)
|
|
2916
|
+
malloc_error();
|
|
2917
|
+
|
|
2918
|
+
(*names)[0] = NULL;
|
|
2919
|
+
(*types)[0] = NULL;
|
|
2920
|
+
(*moles)[0] = 0;
|
|
2921
|
+
for (i = 0; i < (int)count_sys; i++)
|
|
2922
|
+
{
|
|
2923
|
+
(*names)[i + 1] = sys[i].name;
|
|
2924
|
+
(*types)[i + 1] = sys[i].type;
|
|
2925
|
+
(*moles)[i + 1] = sys[i].moles;
|
|
2926
|
+
}
|
|
2927
|
+
*count = (LDBLE)count_sys;
|
|
2928
|
+
if (strcmp_nocase(total_name, "elements") == 0)
|
|
2929
|
+
{
|
|
2930
|
+
sys_tot = 0;;
|
|
2931
|
+
for (i = 0; i < (int)count_sys; i++)
|
|
2932
|
+
{
|
|
2933
|
+
if (strcmp(sys[i].type, "dis") == 0 &&
|
|
2934
|
+
strstr(sys[i].name, "(") == NULL &&
|
|
2935
|
+
strcmp(sys[i].name, "H") != 0
|
|
2936
|
+
&& strcmp(sys[i].name, "O") != 0)
|
|
2937
|
+
{
|
|
2938
|
+
sys_tot += sys[i].moles;
|
|
2939
|
+
}
|
|
2940
|
+
}
|
|
2941
|
+
}
|
|
2942
|
+
//PHRQ_free(sys);
|
|
2943
|
+
sys.clear();
|
|
2944
|
+
return (sys_tot);
|
|
2945
|
+
}
|
|
2946
|
+
|
|
2947
|
+
/* ---------------------------------------------------------------------- */
|
|
2948
|
+
std::string Phreeqc::
|
|
2949
|
+
kinetics_formula(std::string kin_name, cxxNameDouble& stoichiometry)
|
|
2950
|
+
/* ---------------------------------------------------------------------- */
|
|
2951
|
+
{
|
|
2952
|
+
/*
|
|
2953
|
+
* Returns formula of kinetic reactant
|
|
2954
|
+
* Also returns arrays of elements and stoichiometry in stoichiometry
|
|
2955
|
+
*/
|
|
2956
|
+
stoichiometry.clear();
|
|
2957
|
+
std::string formula;
|
|
2958
|
+
|
|
2959
|
+
if (use.Get_kinetics_ptr() == NULL)
|
|
2960
|
+
return (formula);
|
|
2961
|
+
std::vector <cxxKineticsComp> comps = use.Get_kinetics_ptr()->Get_kinetics_comps();
|
|
2962
|
+
count_elts = 0;
|
|
2963
|
+
paren_count = 0;
|
|
2964
|
+
for (size_t i = 0; i < comps.size(); i++)
|
|
2965
|
+
{
|
|
2966
|
+
cxxKineticsComp* comp_ptr = &comps[i];
|
|
2967
|
+
if (kin_name == comp_ptr->Get_rate_name().c_str())
|
|
2968
|
+
{
|
|
2969
|
+
cxxNameDouble nd = comp_ptr->Get_namecoef();
|
|
2970
|
+
cxxNameDouble::iterator it = nd.begin();
|
|
2971
|
+
for (; it != nd.end(); it++)
|
|
2972
|
+
{
|
|
2973
|
+
// Try Phases
|
|
2974
|
+
int l;
|
|
2975
|
+
class phase* phase_ptr = phase_bsearch(it->first.c_str(), &l, FALSE);
|
|
2976
|
+
if (phase_ptr != NULL)
|
|
2977
|
+
{
|
|
2978
|
+
add_elt_list(phase_ptr->next_elt, it->second);
|
|
2979
|
+
}
|
|
2980
|
+
else
|
|
2981
|
+
{
|
|
2982
|
+
// add formula
|
|
2983
|
+
std::string name = it->first;
|
|
2984
|
+
LDBLE coef = it->second;
|
|
2985
|
+
const char* cptr = &name[0];
|
|
2986
|
+
get_elts_in_species(&cptr, coef);
|
|
2987
|
+
}
|
|
2988
|
+
}
|
|
2989
|
+
formula.append(kin_name);
|
|
2990
|
+
//elt_list[count_elts].elt = NULL;
|
|
2991
|
+
elt_list_combine();
|
|
2992
|
+
stoichiometry = elt_list_NameDouble();
|
|
2993
|
+
break;
|
|
2994
|
+
}
|
|
2995
|
+
}
|
|
2996
|
+
return (formula);
|
|
2997
|
+
}
|
|
2998
|
+
/* ---------------------------------------------------------------------- */
|
|
2999
|
+
std::string Phreeqc::
|
|
3000
|
+
phase_formula(std::string phase_name, cxxNameDouble& stoichiometry)
|
|
3001
|
+
/* ---------------------------------------------------------------------- */
|
|
3002
|
+
{
|
|
3003
|
+
/*
|
|
3004
|
+
* Returns formula of mineral
|
|
3005
|
+
* Also returns arrays of elements and stoichiometry in elts_arg and coef_arg
|
|
3006
|
+
*/
|
|
3007
|
+
stoichiometry.clear();
|
|
3008
|
+
std::string formula;
|
|
3009
|
+
|
|
3010
|
+
int j;
|
|
3011
|
+
class phase* phase_ptr = phase_bsearch(phase_name.c_str(), &j, FALSE);
|
|
3012
|
+
if (phase_ptr != NULL)
|
|
3013
|
+
{
|
|
3014
|
+
formula.append(phase_ptr->formula);
|
|
3015
|
+
cxxNameDouble nd(phase_ptr->next_elt);
|
|
3016
|
+
stoichiometry = nd;
|
|
3017
|
+
}
|
|
3018
|
+
|
|
3019
|
+
return (formula);
|
|
3020
|
+
}
|
|
3021
|
+
/* ---------------------------------------------------------------------- */
|
|
3022
|
+
std::string Phreeqc::
|
|
3023
|
+
species_formula(std::string phase_name, cxxNameDouble& stoichiometry)
|
|
3024
|
+
/* ---------------------------------------------------------------------- */
|
|
3025
|
+
{
|
|
3026
|
+
/*
|
|
3027
|
+
* Returns formula of mineral
|
|
3028
|
+
* Also returns arrays of elements and stoichiometry in elts_arg and coef_arg
|
|
3029
|
+
*/
|
|
3030
|
+
stoichiometry.clear();
|
|
3031
|
+
std::string formula;
|
|
3032
|
+
formula = "none";
|
|
3033
|
+
class species* s_ptr = s_search(phase_name.c_str());
|
|
3034
|
+
if (s_ptr != NULL)
|
|
3035
|
+
{
|
|
3036
|
+
cxxNameDouble nd(s_ptr->next_elt);
|
|
3037
|
+
stoichiometry = nd;
|
|
3038
|
+
stoichiometry["charge"] = s_ptr->z;
|
|
3039
|
+
if (s_ptr->type == EX)
|
|
3040
|
+
{
|
|
3041
|
+
formula = "ex";
|
|
3042
|
+
}
|
|
3043
|
+
else if (s_ptr->type == SURF)
|
|
3044
|
+
{
|
|
3045
|
+
formula = "surf";
|
|
3046
|
+
}
|
|
3047
|
+
else
|
|
3048
|
+
{
|
|
3049
|
+
formula = "aq";
|
|
3050
|
+
}
|
|
3051
|
+
}
|
|
3052
|
+
return (formula);
|
|
3053
|
+
}
|
|
3054
|
+
|
|
3055
|
+
/* ---------------------------------------------------------------------- */
|
|
3056
|
+
std::string Phreeqc::
|
|
3057
|
+
phase_equation(std::string phase_name, std::vector<std::pair<std::string, double> >& stoichiometry)
|
|
3058
|
+
/* ---------------------------------------------------------------------- */
|
|
3059
|
+
{
|
|
3060
|
+
/*
|
|
3061
|
+
* Returns equation
|
|
3062
|
+
* Also returns arrays of species and stoichiometry in stoichiometry
|
|
3063
|
+
*/
|
|
3064
|
+
stoichiometry.clear();
|
|
3065
|
+
std::ostringstream eq, lhs, rhs;
|
|
3066
|
+
int j = -1;
|
|
3067
|
+
class phase* phase_ptr = phase_bsearch(phase_name.c_str(), &j, FALSE);
|
|
3068
|
+
bool rhs_started = false;
|
|
3069
|
+
bool lhs_started = false;
|
|
3070
|
+
if (phase_ptr != NULL)
|
|
3071
|
+
{
|
|
3072
|
+
std::vector<rxn_token>::iterator it = phase_ptr->rxn.Get_tokens().begin();
|
|
3073
|
+
for (; it->name != NULL; it++)
|
|
3074
|
+
{
|
|
3075
|
+
if (!lhs_started)
|
|
3076
|
+
{
|
|
3077
|
+
std::pair<std::string, double> item(phase_ptr->formula, it->coef);
|
|
3078
|
+
stoichiometry.push_back(item);
|
|
3079
|
+
}
|
|
3080
|
+
else
|
|
3081
|
+
{
|
|
3082
|
+
std::pair<std::string, double> item(it->name, it->coef);
|
|
3083
|
+
stoichiometry.push_back(item);
|
|
3084
|
+
}
|
|
3085
|
+
if (it->coef < 0.0)
|
|
3086
|
+
{
|
|
3087
|
+
if (lhs_started) lhs << "+ ";
|
|
3088
|
+
if (it->coef != -1.0)
|
|
3089
|
+
{
|
|
3090
|
+
lhs << -it->coef;
|
|
3091
|
+
}
|
|
3092
|
+
lhs << it->name << " ";
|
|
3093
|
+
lhs_started = true;
|
|
3094
|
+
}
|
|
3095
|
+
else if (it->coef > 0.0)
|
|
3096
|
+
{
|
|
3097
|
+
if (rhs_started) rhs << "+ ";
|
|
3098
|
+
if (it->coef != 1.0)
|
|
3099
|
+
{
|
|
3100
|
+
rhs << it->coef;
|
|
3101
|
+
}
|
|
3102
|
+
rhs << it->name << " ";
|
|
3103
|
+
rhs_started = true;
|
|
3104
|
+
}
|
|
3105
|
+
}
|
|
3106
|
+
}
|
|
3107
|
+
eq << lhs.str() << "= " << rhs.str();
|
|
3108
|
+
return (eq.str());
|
|
3109
|
+
}
|
|
3110
|
+
|
|
3111
|
+
/* ---------------------------------------------------------------------- */
|
|
3112
|
+
std::string Phreeqc::
|
|
3113
|
+
species_equation(std::string species_name, std::vector<std::pair<std::string, double> >& stoichiometry)
|
|
3114
|
+
/* ---------------------------------------------------------------------- */
|
|
3115
|
+
{
|
|
3116
|
+
/*
|
|
3117
|
+
* Returns equation
|
|
3118
|
+
* Also returns arrays of species and stoichiometry in stoichiometry
|
|
3119
|
+
*/
|
|
3120
|
+
stoichiometry.clear();
|
|
3121
|
+
std::ostringstream eq, lhs, rhs;;
|
|
3122
|
+
class species* s_ptr = s_search(species_name.c_str());
|
|
3123
|
+
bool rhs_started = false;
|
|
3124
|
+
bool lhs_started = false;
|
|
3125
|
+
if (s_ptr != NULL)
|
|
3126
|
+
{
|
|
3127
|
+
std::vector<rxn_token>::iterator it = s_ptr->rxn.Get_tokens().begin();
|
|
3128
|
+
for ( ; it->name != NULL; it++)
|
|
3129
|
+
{
|
|
3130
|
+
std::pair<std::string, double> item(it->name, it->coef);
|
|
3131
|
+
stoichiometry.push_back(item);
|
|
3132
|
+
if (it->coef > 0.0)
|
|
3133
|
+
{
|
|
3134
|
+
if (lhs_started) lhs << "+ ";
|
|
3135
|
+
if (it->coef != 1.0)
|
|
3136
|
+
{
|
|
3137
|
+
lhs << it->coef;
|
|
3138
|
+
}
|
|
3139
|
+
lhs << it->name << " ";
|
|
3140
|
+
lhs_started = true;
|
|
3141
|
+
}
|
|
3142
|
+
else if (it->coef < 0.0)
|
|
3143
|
+
{
|
|
3144
|
+
if (rhs_started) rhs << "+ ";
|
|
3145
|
+
if (it->coef != -1.0)
|
|
3146
|
+
{
|
|
3147
|
+
rhs << -it->coef;
|
|
3148
|
+
}
|
|
3149
|
+
rhs << it->name << " ";
|
|
3150
|
+
rhs_started = true;
|
|
3151
|
+
}
|
|
3152
|
+
}
|
|
3153
|
+
}
|
|
3154
|
+
eq << lhs.str() << "= " << rhs.str();
|
|
3155
|
+
return (eq.str());
|
|
3156
|
+
}
|
|
3157
|
+
|
|
3158
|
+
/* ---------------------------------------------------------------------- */
|
|
3159
|
+
int Phreeqc::
|
|
3160
|
+
system_total_elements(void)
|
|
3161
|
+
/* ---------------------------------------------------------------------- */
|
|
3162
|
+
{
|
|
3163
|
+
int i;
|
|
3164
|
+
LDBLE t;
|
|
3165
|
+
char name[MAX_LENGTH];
|
|
3166
|
+
class master* master_ptr;
|
|
3167
|
+
|
|
3168
|
+
/*
|
|
3169
|
+
* Include H and O
|
|
3170
|
+
*/
|
|
3171
|
+
size_t count_sys = sys.size();
|
|
3172
|
+
sys.resize(count_sys + 1);
|
|
3173
|
+
sys[count_sys].name = string_duplicate("H");
|
|
3174
|
+
sys[count_sys].moles = total_h_x;
|
|
3175
|
+
sys_tot += sys[count_sys].moles;
|
|
3176
|
+
sys[count_sys].type = string_duplicate("dis");
|
|
3177
|
+
count_sys++;
|
|
3178
|
+
sys.resize(count_sys + 1);
|
|
3179
|
+
sys[count_sys].name = string_duplicate("O");
|
|
3180
|
+
sys[count_sys].moles = total_o_x;
|
|
3181
|
+
sys_tot += sys[count_sys].moles;
|
|
3182
|
+
sys[count_sys].type = string_duplicate("dis");
|
|
3183
|
+
count_sys++;;
|
|
3184
|
+
/*
|
|
3185
|
+
* Include H(1) and O(-2)
|
|
3186
|
+
*/
|
|
3187
|
+
sys.resize(count_sys + 1);
|
|
3188
|
+
sys[count_sys].name = string_duplicate("H(1)");
|
|
3189
|
+
sys[count_sys].moles = solution_sum_secondary("H(1)");
|
|
3190
|
+
sys_tot += sys[count_sys].moles;
|
|
3191
|
+
sys[count_sys].type = string_duplicate("dis");
|
|
3192
|
+
count_sys++;
|
|
3193
|
+
sys.resize(count_sys + 1);
|
|
3194
|
+
sys[count_sys].name = string_duplicate("O(-2)");
|
|
3195
|
+
sys[count_sys].moles = solution_sum_secondary("O(-2)");
|
|
3196
|
+
sys_tot += sys[count_sys].moles;
|
|
3197
|
+
sys[count_sys].type = string_duplicate("dis");
|
|
3198
|
+
count_sys++;
|
|
3199
|
+
for (i = 0; i < (int)master.size(); i++)
|
|
3200
|
+
{
|
|
3201
|
+
master_ptr = master[i];
|
|
3202
|
+
if (master_ptr->primary == TRUE && master_ptr->total_primary <= 0)
|
|
3203
|
+
continue;
|
|
3204
|
+
if (master_ptr->in == FALSE
|
|
3205
|
+
&& (master_ptr->primary == FALSE
|
|
3206
|
+
|| master_ptr->total_primary == 0))
|
|
3207
|
+
continue;
|
|
3208
|
+
/*
|
|
3209
|
+
* H and O
|
|
3210
|
+
*/
|
|
3211
|
+
if (master_ptr->s == s_hplus)
|
|
3212
|
+
{
|
|
3213
|
+
continue;
|
|
3214
|
+
}
|
|
3215
|
+
else if (master_ptr->s == s_h2o)
|
|
3216
|
+
{
|
|
3217
|
+
continue;
|
|
3218
|
+
}
|
|
3219
|
+
if (master_ptr->primary == TRUE)
|
|
3220
|
+
{
|
|
3221
|
+
if (master_ptr->total_primary > 0)
|
|
3222
|
+
{
|
|
3223
|
+
t = master_ptr->total_primary;
|
|
3224
|
+
/*
|
|
3225
|
+
* Not a redox element
|
|
3226
|
+
*/
|
|
3227
|
+
}
|
|
3228
|
+
else if (master_ptr->s->secondary == NULL)
|
|
3229
|
+
{
|
|
3230
|
+
t = master_ptr->total;
|
|
3231
|
+
/*
|
|
3232
|
+
* Redox element, need to sum totals of all redox states
|
|
3233
|
+
*/
|
|
3234
|
+
}
|
|
3235
|
+
else
|
|
3236
|
+
{
|
|
3237
|
+
t = 0;
|
|
3238
|
+
for (size_t j = master_ptr->number + 1;
|
|
3239
|
+
master[j]->elt->primary == master_ptr; j++)
|
|
3240
|
+
{
|
|
3241
|
+
t += master[j]->total;
|
|
3242
|
+
}
|
|
3243
|
+
}
|
|
3244
|
+
/*
|
|
3245
|
+
* Secondary master species
|
|
3246
|
+
*/
|
|
3247
|
+
}
|
|
3248
|
+
else
|
|
3249
|
+
{
|
|
3250
|
+
t = master_ptr->total;
|
|
3251
|
+
}
|
|
3252
|
+
Utilities::strcpy_safe(name, MAX_LENGTH, master[i]->elt->name);
|
|
3253
|
+
count_sys = sys.size();
|
|
3254
|
+
sys.resize(count_sys + 1);
|
|
3255
|
+
sys[count_sys].name = string_duplicate(name);
|
|
3256
|
+
sys[count_sys].moles = t;
|
|
3257
|
+
sys_tot += sys[count_sys].moles;
|
|
3258
|
+
if (master[i]->s->type <= SOLID)
|
|
3259
|
+
{
|
|
3260
|
+
sys[count_sys].type = string_duplicate("dis");
|
|
3261
|
+
}
|
|
3262
|
+
else if (master[i]->s->type == EX)
|
|
3263
|
+
{
|
|
3264
|
+
sys[count_sys].type = string_duplicate("ex");
|
|
3265
|
+
}
|
|
3266
|
+
else if (master[i]->s->type == SURF || master[i]->s->type == SURF_PSI)
|
|
3267
|
+
{
|
|
3268
|
+
sys[count_sys].type = string_duplicate("surf");
|
|
3269
|
+
}
|
|
3270
|
+
}
|
|
3271
|
+
return (OK);
|
|
3272
|
+
}
|
|
3273
|
+
|
|
3274
|
+
/* ---------------------------------------------------------------------- */
|
|
3275
|
+
int Phreeqc::
|
|
3276
|
+
system_total_si(void)
|
|
3277
|
+
/* ---------------------------------------------------------------------- */
|
|
3278
|
+
{
|
|
3279
|
+
int i;
|
|
3280
|
+
LDBLE si, iap;
|
|
3281
|
+
class rxn_token* rxn_ptr;
|
|
3282
|
+
char name[MAX_LENGTH];
|
|
3283
|
+
|
|
3284
|
+
sys_tot = -999.9;
|
|
3285
|
+
for (i = 0; i < (int)phases.size(); i++)
|
|
3286
|
+
{
|
|
3287
|
+
if (phases[i]->in == FALSE || phases[i]->type != SOLID)
|
|
3288
|
+
continue;
|
|
3289
|
+
/*
|
|
3290
|
+
* Print saturation index
|
|
3291
|
+
*/
|
|
3292
|
+
iap = 0.0;
|
|
3293
|
+
for (rxn_ptr = &phases[i]->rxn_x.token[0] + 1; rxn_ptr->s != NULL;
|
|
3294
|
+
rxn_ptr++)
|
|
3295
|
+
{
|
|
3296
|
+
iap += rxn_ptr->s->la * rxn_ptr->coef;
|
|
3297
|
+
}
|
|
3298
|
+
si = -phases[i]->lk + iap;
|
|
3299
|
+
Utilities::strcpy_safe(name, MAX_LENGTH, phases[i]->name);
|
|
3300
|
+
size_t count_sys = sys.size();
|
|
3301
|
+
sys.resize(count_sys + 1);
|
|
3302
|
+
sys[count_sys].name = string_duplicate(name);
|
|
3303
|
+
sys[count_sys].moles = si;
|
|
3304
|
+
if (si > sys_tot)
|
|
3305
|
+
sys_tot = si;
|
|
3306
|
+
sys[count_sys].type = string_duplicate("phase");
|
|
3307
|
+
}
|
|
3308
|
+
return (OK);
|
|
3309
|
+
}
|
|
3310
|
+
|
|
3311
|
+
/* ---------------------------------------------------------------------- */
|
|
3312
|
+
int Phreeqc::
|
|
3313
|
+
system_total_aq(void)
|
|
3314
|
+
/* ---------------------------------------------------------------------- */
|
|
3315
|
+
{
|
|
3316
|
+
/*
|
|
3317
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
3318
|
+
*/
|
|
3319
|
+
int i;
|
|
3320
|
+
/*
|
|
3321
|
+
* find total moles in aq, surface, and exchange
|
|
3322
|
+
*/
|
|
3323
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
3324
|
+
{
|
|
3325
|
+
//if (s_x[i]->type != AQ)
|
|
3326
|
+
if (s_x[i]->type > HPLUS)
|
|
3327
|
+
continue;
|
|
3328
|
+
size_t count_sys = sys.size();
|
|
3329
|
+
sys.resize(count_sys + 1);
|
|
3330
|
+
sys[count_sys].name = string_duplicate(s_x[i]->name);
|
|
3331
|
+
sys[count_sys].moles = s_x[i]->moles;
|
|
3332
|
+
sys_tot += sys[count_sys].moles;
|
|
3333
|
+
sys[count_sys].type = string_duplicate("aq");
|
|
3334
|
+
}
|
|
3335
|
+
return (OK);
|
|
3336
|
+
}
|
|
3337
|
+
|
|
3338
|
+
/* ---------------------------------------------------------------------- */
|
|
3339
|
+
int Phreeqc::
|
|
3340
|
+
system_total_ex(void)
|
|
3341
|
+
/* ---------------------------------------------------------------------- */
|
|
3342
|
+
{
|
|
3343
|
+
/*
|
|
3344
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
3345
|
+
*/
|
|
3346
|
+
int i;
|
|
3347
|
+
/*
|
|
3348
|
+
* find total moles in aq, surface, and exchange
|
|
3349
|
+
*/
|
|
3350
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
3351
|
+
{
|
|
3352
|
+
if (s_x[i]->type != EX)
|
|
3353
|
+
continue;
|
|
3354
|
+
if (s_x[i]->primary != NULL)
|
|
3355
|
+
continue;
|
|
3356
|
+
size_t count_sys = sys.size();
|
|
3357
|
+
sys.resize(count_sys + 1);
|
|
3358
|
+
sys[count_sys].name = string_duplicate(s_x[i]->name);
|
|
3359
|
+
sys[count_sys].moles = s_x[i]->moles;
|
|
3360
|
+
sys_tot += sys[count_sys].moles;
|
|
3361
|
+
sys[count_sys].type = string_duplicate("ex");
|
|
3362
|
+
}
|
|
3363
|
+
return (OK);
|
|
3364
|
+
}
|
|
3365
|
+
|
|
3366
|
+
/* ---------------------------------------------------------------------- */
|
|
3367
|
+
int Phreeqc::
|
|
3368
|
+
system_total_surf(void)
|
|
3369
|
+
/* ---------------------------------------------------------------------- */
|
|
3370
|
+
{
|
|
3371
|
+
/*
|
|
3372
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
3373
|
+
*/
|
|
3374
|
+
int i;
|
|
3375
|
+
/*
|
|
3376
|
+
* find total moles in aq, surface, and exchange
|
|
3377
|
+
*/
|
|
3378
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
3379
|
+
{
|
|
3380
|
+
if (s_x[i]->type != SURF)
|
|
3381
|
+
continue;
|
|
3382
|
+
size_t count_sys = sys.size();
|
|
3383
|
+
sys.resize(count_sys + 1);
|
|
3384
|
+
sys[count_sys].name = string_duplicate(s_x[i]->name);
|
|
3385
|
+
sys[count_sys].moles = s_x[i]->moles;
|
|
3386
|
+
sys_tot += sys[count_sys].moles;
|
|
3387
|
+
sys[count_sys].type = string_duplicate("surf");
|
|
3388
|
+
}
|
|
3389
|
+
return (OK);
|
|
3390
|
+
}
|
|
3391
|
+
/* ---------------------------------------------------------------------- */
|
|
3392
|
+
int Phreeqc::
|
|
3393
|
+
system_total_gas(void)
|
|
3394
|
+
/* ---------------------------------------------------------------------- */
|
|
3395
|
+
{
|
|
3396
|
+
/*
|
|
3397
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
3398
|
+
*/
|
|
3399
|
+
int i;
|
|
3400
|
+
|
|
3401
|
+
/*
|
|
3402
|
+
* find total in gas phase
|
|
3403
|
+
*/
|
|
3404
|
+
if (use.Get_gas_phase_ptr() == NULL)
|
|
3405
|
+
return (OK);
|
|
3406
|
+
cxxGasPhase *gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
3407
|
+
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
|
|
3408
|
+
{
|
|
3409
|
+
class phase *phase_ptr = phase_bsearch(gas_phase_ptr->Get_gas_comps()[j].Get_phase_name().c_str(),
|
|
3410
|
+
&i, FALSE);
|
|
3411
|
+
assert(phase_ptr);
|
|
3412
|
+
size_t count_sys = sys.size();
|
|
3413
|
+
sys.resize(count_sys + 1);
|
|
3414
|
+
sys[count_sys].name = string_duplicate(phase_ptr->name);
|
|
3415
|
+
sys[count_sys].moles = phase_ptr->moles_x;
|
|
3416
|
+
sys_tot += sys[count_sys].moles;
|
|
3417
|
+
sys[count_sys].type = string_duplicate("gas");
|
|
3418
|
+
}
|
|
3419
|
+
return (OK);
|
|
3420
|
+
}
|
|
3421
|
+
/* ---------------------------------------------------------------------- */
|
|
3422
|
+
int Phreeqc::
|
|
3423
|
+
system_total_equi(void)
|
|
3424
|
+
/* ---------------------------------------------------------------------- */
|
|
3425
|
+
{
|
|
3426
|
+
/*
|
|
3427
|
+
* Equilibrium phases
|
|
3428
|
+
*/
|
|
3429
|
+
if (use.Get_pp_assemblage_ptr() == NULL)
|
|
3430
|
+
return (OK);
|
|
3431
|
+
std::map <std::string, cxxPPassemblageComp > comps = use.Get_pp_assemblage_ptr()->Get_pp_assemblage_comps();
|
|
3432
|
+
std::map <std::string, cxxPPassemblageComp >::iterator it = comps.begin();
|
|
3433
|
+
for ( ; it != comps.end(); it++)
|
|
3434
|
+
{
|
|
3435
|
+
cxxPPassemblageComp *comp_ptr = &(it->second);
|
|
3436
|
+
int l;
|
|
3437
|
+
class phase *phase_ptr = phase_bsearch(comp_ptr->Get_name().c_str(), &l, FALSE);
|
|
3438
|
+
size_t count_sys = sys.size();
|
|
3439
|
+
sys.resize(count_sys + 1);
|
|
3440
|
+
sys[count_sys].name = string_duplicate(phase_ptr->name);
|
|
3441
|
+
sys[count_sys].moles = equi_phase(sys[count_sys].name);
|
|
3442
|
+
sys_tot += sys[count_sys].moles;
|
|
3443
|
+
sys[count_sys].type = string_duplicate("equi");
|
|
3444
|
+
}
|
|
3445
|
+
return (OK);
|
|
3446
|
+
}
|
|
3447
|
+
/* ---------------------------------------------------------------------- */
|
|
3448
|
+
int Phreeqc::
|
|
3449
|
+
system_total_kin(void)
|
|
3450
|
+
/* ---------------------------------------------------------------------- */
|
|
3451
|
+
{
|
|
3452
|
+
/*
|
|
3453
|
+
* Equilibrium phases
|
|
3454
|
+
*/
|
|
3455
|
+
if (use.Get_kinetics_ptr() == NULL)
|
|
3456
|
+
return (OK);
|
|
3457
|
+
std::vector <cxxKineticsComp> comps = use.Get_kinetics_ptr()->Get_kinetics_comps();
|
|
3458
|
+
for (size_t i=0 ; i < comps.size(); i++)
|
|
3459
|
+
{
|
|
3460
|
+
cxxKineticsComp *comp_ptr = &comps[i];
|
|
3461
|
+
size_t count_sys = sys.size();
|
|
3462
|
+
sys.resize(count_sys + 1);
|
|
3463
|
+
sys[count_sys].name = string_duplicate(comp_ptr->Get_rate_name().c_str());
|
|
3464
|
+
sys[count_sys].moles = comp_ptr->Get_m();
|
|
3465
|
+
sys_tot += sys[count_sys].moles;
|
|
3466
|
+
sys[count_sys].type = string_duplicate("kin");
|
|
3467
|
+
}
|
|
3468
|
+
return (OK);
|
|
3469
|
+
}
|
|
3470
|
+
/* ---------------------------------------------------------------------- */
|
|
3471
|
+
int Phreeqc::
|
|
3472
|
+
system_total_ss(void)
|
|
3473
|
+
/* ---------------------------------------------------------------------- */
|
|
3474
|
+
{
|
|
3475
|
+
/*
|
|
3476
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
3477
|
+
*/
|
|
3478
|
+
|
|
3479
|
+
/*
|
|
3480
|
+
* Solid solutions
|
|
3481
|
+
*/
|
|
3482
|
+
if (use.Get_ss_assemblage_ptr() == NULL)
|
|
3483
|
+
return (OK);
|
|
3484
|
+
std::vector<cxxSS *> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
3485
|
+
for (size_t k = 0; k < ss_ptrs.size(); k++)
|
|
3486
|
+
{
|
|
3487
|
+
cxxSS *ss_ptr = ss_ptrs[k];
|
|
3488
|
+
for (size_t i = 0; i < ss_ptr->Get_ss_comps().size(); i++)
|
|
3489
|
+
{
|
|
3490
|
+
cxxSScomp *comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
3491
|
+
int l;
|
|
3492
|
+
class phase *phase_ptr = phase_bsearch(comp_ptr->Get_name().c_str(), &l, FALSE);
|
|
3493
|
+
size_t count_sys = sys.size();
|
|
3494
|
+
sys.resize(count_sys + 1);
|
|
3495
|
+
sys[count_sys].name = string_duplicate(phase_ptr->name);
|
|
3496
|
+
sys[count_sys].moles = comp_ptr->Get_moles();
|
|
3497
|
+
sys_tot += sys[count_sys].moles;
|
|
3498
|
+
sys[count_sys].type = string_duplicate("s_s");
|
|
3499
|
+
}
|
|
3500
|
+
}
|
|
3501
|
+
return (OK);
|
|
3502
|
+
}
|
|
3503
|
+
/* ---------------------------------------------------------------------- */
|
|
3504
|
+
int Phreeqc::
|
|
3505
|
+
system_total_elt(const char *total_name)
|
|
3506
|
+
/* ---------------------------------------------------------------------- */
|
|
3507
|
+
{
|
|
3508
|
+
/*
|
|
3509
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
3510
|
+
*/
|
|
3511
|
+
int i, j, k;
|
|
3512
|
+
LDBLE molality, moles_excess, moles_surface, mass_water_surface;
|
|
3513
|
+
char name[MAX_LENGTH];
|
|
3514
|
+
|
|
3515
|
+
/*
|
|
3516
|
+
* find total moles in aq, surface, and exchange
|
|
3517
|
+
*/
|
|
3518
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
3519
|
+
{
|
|
3520
|
+
count_elts = 0;
|
|
3521
|
+
paren_count = 0;
|
|
3522
|
+
add_elt_list(s_x[i]->next_elt, s_x[i]->moles);
|
|
3523
|
+
|
|
3524
|
+
elt_list_combine();
|
|
3525
|
+
/*
|
|
3526
|
+
* Look for element
|
|
3527
|
+
*/
|
|
3528
|
+
for (j = 0; j < count_elts; j++)
|
|
3529
|
+
{
|
|
3530
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3531
|
+
{
|
|
3532
|
+
size_t count_sys = sys.size();
|
|
3533
|
+
sys.resize(count_sys + 1);
|
|
3534
|
+
sys[count_sys].name = string_duplicate(s_x[i]->name);
|
|
3535
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3536
|
+
sys_tot += sys[count_sys].moles;
|
|
3537
|
+
if (s_x[i]->type == AQ)
|
|
3538
|
+
{
|
|
3539
|
+
sys[count_sys].type = string_duplicate("aq");
|
|
3540
|
+
}
|
|
3541
|
+
else if (s_x[i]->type == EX)
|
|
3542
|
+
{
|
|
3543
|
+
sys[count_sys].type = string_duplicate("ex");
|
|
3544
|
+
/* subtract again the dummy moles of primary exchange species... */
|
|
3545
|
+
if (s_x[i]->primary != NULL)
|
|
3546
|
+
{
|
|
3547
|
+
sys_tot -= elt_list[j].coef;
|
|
3548
|
+
}
|
|
3549
|
+
}
|
|
3550
|
+
else if (s_x[i]->type == SURF)
|
|
3551
|
+
{
|
|
3552
|
+
sys[count_sys].type = string_duplicate("surf");
|
|
3553
|
+
}
|
|
3554
|
+
else if (s_x[i]->type == HPLUS)
|
|
3555
|
+
{
|
|
3556
|
+
sys[count_sys].type = string_duplicate("aq");
|
|
3557
|
+
/* sys[count_sys].moles = total_h_x; */
|
|
3558
|
+
}
|
|
3559
|
+
else if (s_x[i]->type == H2O)
|
|
3560
|
+
{
|
|
3561
|
+
sys[count_sys].type = string_duplicate("aq");
|
|
3562
|
+
/* sys[count_sys].moles = total_o_x; */
|
|
3563
|
+
}
|
|
3564
|
+
else
|
|
3565
|
+
{
|
|
3566
|
+
error_msg("System_total", STOP);
|
|
3567
|
+
}
|
|
3568
|
+
break;
|
|
3569
|
+
}
|
|
3570
|
+
}
|
|
3571
|
+
}
|
|
3572
|
+
if (use.Get_surface_ptr() != NULL && dl_type_x != cxxSurface::NO_DL)
|
|
3573
|
+
{
|
|
3574
|
+
/*
|
|
3575
|
+
* Find position of component in surface charge data
|
|
3576
|
+
*/
|
|
3577
|
+
i = -1;
|
|
3578
|
+
for (k = 0; k < count_unknowns; k++)
|
|
3579
|
+
{
|
|
3580
|
+
if (x[k]->type != SURFACE_CB)
|
|
3581
|
+
continue;
|
|
3582
|
+
cxxSurfaceCharge *charge_ptr = use.Get_surface_ptr()->Find_charge(x[k]->surface_charge);
|
|
3583
|
+
i++;
|
|
3584
|
+
/*
|
|
3585
|
+
* Loop through all surface components, calculate each H2O surface (diffuse layer),
|
|
3586
|
+
* H2O aq, and H2O bulk (diffuse layers plus aqueous).
|
|
3587
|
+
*/
|
|
3588
|
+
mass_water_surface = charge_ptr->Get_mass_water();
|
|
3589
|
+
count_elts = 0;
|
|
3590
|
+
paren_count = 0;
|
|
3591
|
+
for (j = 0; j < (int)this->s_x.size(); j++)
|
|
3592
|
+
{
|
|
3593
|
+
if (s_x[j]->type > HPLUS)
|
|
3594
|
+
continue;
|
|
3595
|
+
molality = under(s_x[j]->lm);
|
|
3596
|
+
moles_excess =
|
|
3597
|
+
mass_water_aq_x * molality *
|
|
3598
|
+
(charge_ptr->Get_g_map()[s_x[j]->z].Get_g() * s_x[j]->erm_ddl +
|
|
3599
|
+
mass_water_surface / mass_water_aq_x * (s_x[j]->erm_ddl -
|
|
3600
|
+
1));
|
|
3601
|
+
moles_surface = mass_water_surface * molality + moles_excess;
|
|
3602
|
+
/*
|
|
3603
|
+
* Accumulate elements in diffuse layer
|
|
3604
|
+
*/
|
|
3605
|
+
add_elt_list(s_x[j]->next_elt, moles_surface);
|
|
3606
|
+
}
|
|
3607
|
+
elt_list_combine();
|
|
3608
|
+
/*
|
|
3609
|
+
* Print totals
|
|
3610
|
+
*/
|
|
3611
|
+
for (j = 0; j < count_elts; j++)
|
|
3612
|
+
{
|
|
3613
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3614
|
+
{
|
|
3615
|
+
size_t count_sys = sys.size();
|
|
3616
|
+
sys.resize(count_sys + 1);
|
|
3617
|
+
Utilities::strcpy_safe(name, MAX_LENGTH, x[k]->master[0]->elt->name);
|
|
3618
|
+
replace("_psi", "", name);
|
|
3619
|
+
sys[count_sys].name = string_duplicate(name);
|
|
3620
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3621
|
+
sys_tot += sys[count_sys].moles;
|
|
3622
|
+
sys[count_sys].type = string_duplicate("diff");
|
|
3623
|
+
break;
|
|
3624
|
+
}
|
|
3625
|
+
}
|
|
3626
|
+
}
|
|
3627
|
+
}
|
|
3628
|
+
/*
|
|
3629
|
+
* find total moles in mineral phases
|
|
3630
|
+
*/
|
|
3631
|
+
if (use.Get_pp_assemblage_in() == TRUE && use.Get_pp_assemblage_ptr() != NULL)
|
|
3632
|
+
{
|
|
3633
|
+
for (i = 0; i < count_unknowns; i++)
|
|
3634
|
+
{
|
|
3635
|
+
if (x[i]->type != PP)
|
|
3636
|
+
continue;
|
|
3637
|
+
//std::map<std::string, cxxPPassemblageComp>::iterator it;
|
|
3638
|
+
//it = pp_assemblage_ptr->Get_pp_assemblage_comps().find(x[i]->pp_assemblage_comp_name);
|
|
3639
|
+
cxxPPassemblageComp * comp_ptr = (cxxPPassemblageComp * ) x[i]->pp_assemblage_comp_ptr;
|
|
3640
|
+
//if (it->second.Get_add_formula().size() > 0)
|
|
3641
|
+
if (comp_ptr->Get_add_formula().size() > 0)
|
|
3642
|
+
continue;
|
|
3643
|
+
count_elts = 0;
|
|
3644
|
+
paren_count = 0;
|
|
3645
|
+
int j;
|
|
3646
|
+
//class phase * phase_ptr = phase_bsearch(x[i]->pp_assemblage_comp_name, &j, FALSE);
|
|
3647
|
+
class phase * phase_ptr = x[i]->phase;
|
|
3648
|
+
add_elt_list(phase_ptr->next_elt, x[i]->moles);
|
|
3649
|
+
elt_list_combine();
|
|
3650
|
+
for (j = 0; j < count_elts; j++)
|
|
3651
|
+
{
|
|
3652
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3653
|
+
{
|
|
3654
|
+
size_t count_sys = sys.size();
|
|
3655
|
+
sys.resize(count_sys + 1);
|
|
3656
|
+
sys[count_sys].name = string_duplicate(phase_ptr->name);
|
|
3657
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3658
|
+
sys_tot += sys[count_sys].moles;
|
|
3659
|
+
sys[count_sys].type = string_duplicate("equi");
|
|
3660
|
+
break;
|
|
3661
|
+
}
|
|
3662
|
+
}
|
|
3663
|
+
}
|
|
3664
|
+
}
|
|
3665
|
+
/*
|
|
3666
|
+
* Solid solutions
|
|
3667
|
+
*/
|
|
3668
|
+
if (use.Get_ss_assemblage_ptr() != NULL)
|
|
3669
|
+
{
|
|
3670
|
+
std::vector<cxxSS *> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
3671
|
+
for (size_t k = 0; k < ss_ptrs.size(); k++)
|
|
3672
|
+
{
|
|
3673
|
+
cxxSS *ss_ptr = ss_ptrs[k];
|
|
3674
|
+
if (ss_ptr->Get_ss_in())
|
|
3675
|
+
{
|
|
3676
|
+
for (size_t i = 0; i < ss_ptr->Get_ss_comps().size(); i++)
|
|
3677
|
+
{
|
|
3678
|
+
cxxSScomp *comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
3679
|
+
int l;
|
|
3680
|
+
class phase *phase_ptr = phase_bsearch(comp_ptr->Get_name().c_str(), &l, FALSE);
|
|
3681
|
+
count_elts = 0;
|
|
3682
|
+
paren_count = 0;
|
|
3683
|
+
add_elt_list(phase_ptr->next_elt,
|
|
3684
|
+
comp_ptr->Get_moles());
|
|
3685
|
+
elt_list_combine();
|
|
3686
|
+
for (j = 0; j < count_elts; j++)
|
|
3687
|
+
{
|
|
3688
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3689
|
+
{
|
|
3690
|
+
size_t count_sys = sys.size();
|
|
3691
|
+
sys.resize(count_sys + 1);
|
|
3692
|
+
sys[count_sys].name =
|
|
3693
|
+
string_duplicate(phase_ptr->name);
|
|
3694
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3695
|
+
sys_tot += sys[count_sys].moles;
|
|
3696
|
+
sys[count_sys].type = string_duplicate("s_s");
|
|
3697
|
+
break;
|
|
3698
|
+
}
|
|
3699
|
+
}
|
|
3700
|
+
}
|
|
3701
|
+
}
|
|
3702
|
+
}
|
|
3703
|
+
}
|
|
3704
|
+
/*
|
|
3705
|
+
* find total in gas phase
|
|
3706
|
+
*/
|
|
3707
|
+
if (use.Get_gas_phase_ptr() != NULL)
|
|
3708
|
+
{
|
|
3709
|
+
cxxGasPhase *gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
3710
|
+
for (size_t i = 0; i < gas_phase_ptr->Get_gas_comps().size(); i++)
|
|
3711
|
+
{
|
|
3712
|
+
class phase *phase_ptr =
|
|
3713
|
+
phase_bsearch(gas_phase_ptr->Get_gas_comps()[i].Get_phase_name().c_str(), &k, FALSE);
|
|
3714
|
+
assert(phase_ptr);
|
|
3715
|
+
if (phase_ptr->in == TRUE)
|
|
3716
|
+
{
|
|
3717
|
+
count_elts = 0;
|
|
3718
|
+
paren_count = 0;
|
|
3719
|
+
add_elt_list(phase_ptr->next_elt, phase_ptr->moles_x);
|
|
3720
|
+
elt_list_combine();
|
|
3721
|
+
/*
|
|
3722
|
+
* Look for element
|
|
3723
|
+
*/
|
|
3724
|
+
for (j = 0; j < count_elts; j++)
|
|
3725
|
+
{
|
|
3726
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3727
|
+
{
|
|
3728
|
+
size_t count_sys = sys.size();
|
|
3729
|
+
sys.resize(count_sys + 1);
|
|
3730
|
+
sys[count_sys].name = string_duplicate(phase_ptr->name);
|
|
3731
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3732
|
+
sys_tot += sys[count_sys].moles;
|
|
3733
|
+
sys[count_sys].type = string_duplicate("gas");
|
|
3734
|
+
break;
|
|
3735
|
+
}
|
|
3736
|
+
}
|
|
3737
|
+
}
|
|
3738
|
+
}
|
|
3739
|
+
}
|
|
3740
|
+
return (OK);
|
|
3741
|
+
}
|
|
3742
|
+
|
|
3743
|
+
/* ---------------------------------------------------------------------- */
|
|
3744
|
+
int Phreeqc::
|
|
3745
|
+
system_total_elt_secondary(const char *total_name)
|
|
3746
|
+
/* ---------------------------------------------------------------------- */
|
|
3747
|
+
{
|
|
3748
|
+
/*
|
|
3749
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
3750
|
+
*/
|
|
3751
|
+
int i, j, k, l;
|
|
3752
|
+
LDBLE molality, moles_excess, moles_surface, mass_water_surface, sum,
|
|
3753
|
+
coef;
|
|
3754
|
+
char name[MAX_LENGTH];
|
|
3755
|
+
/*
|
|
3756
|
+
* find total moles in aq, surface, and exchange
|
|
3757
|
+
*/
|
|
3758
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
3759
|
+
{
|
|
3760
|
+
count_elts = 0;
|
|
3761
|
+
paren_count = 0;
|
|
3762
|
+
if (s_x[i]->next_secondary.size() != 0)
|
|
3763
|
+
{
|
|
3764
|
+
add_elt_list(s_x[i]->next_secondary, s_x[i]->moles);
|
|
3765
|
+
}
|
|
3766
|
+
else
|
|
3767
|
+
{
|
|
3768
|
+
add_elt_list(s_x[i]->next_sys_total, s_x[i]->moles);
|
|
3769
|
+
}
|
|
3770
|
+
elt_list_combine();
|
|
3771
|
+
/*
|
|
3772
|
+
* Look for element
|
|
3773
|
+
*/
|
|
3774
|
+
for (j = 0; j < count_elts; j++)
|
|
3775
|
+
{
|
|
3776
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3777
|
+
{
|
|
3778
|
+
size_t count_sys = sys.size();
|
|
3779
|
+
sys.resize(count_sys + 1);
|
|
3780
|
+
sys[count_sys].name = string_duplicate(s_x[i]->name);
|
|
3781
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3782
|
+
sys_tot += sys[count_sys].moles;
|
|
3783
|
+
if (s_x[i]->type == AQ)
|
|
3784
|
+
{
|
|
3785
|
+
sys[count_sys].type = string_duplicate("aq");
|
|
3786
|
+
}
|
|
3787
|
+
else if (s_x[i]->type == EX)
|
|
3788
|
+
{
|
|
3789
|
+
sys[count_sys].type = string_duplicate("ex");
|
|
3790
|
+
}
|
|
3791
|
+
else if (s_x[i]->type == SURF)
|
|
3792
|
+
{
|
|
3793
|
+
sys[count_sys].type = string_duplicate("surf");
|
|
3794
|
+
}
|
|
3795
|
+
else if (s_x[i]->type == HPLUS)
|
|
3796
|
+
{
|
|
3797
|
+
sys[count_sys].type = string_duplicate("aq");
|
|
3798
|
+
/* sys[count_sys].moles = total_h_x; */
|
|
3799
|
+
}
|
|
3800
|
+
else if (s_x[i]->type == H2O)
|
|
3801
|
+
{
|
|
3802
|
+
sys[count_sys].type = string_duplicate("aq");
|
|
3803
|
+
/* sys[count_sys].moles = total_o_x; */
|
|
3804
|
+
}
|
|
3805
|
+
else
|
|
3806
|
+
{
|
|
3807
|
+
error_msg("System_total", STOP);
|
|
3808
|
+
}
|
|
3809
|
+
break;
|
|
3810
|
+
}
|
|
3811
|
+
}
|
|
3812
|
+
}
|
|
3813
|
+
if (use.Get_surface_ptr() != NULL && dl_type_x != cxxSurface::NO_DL)
|
|
3814
|
+
{
|
|
3815
|
+
/*
|
|
3816
|
+
* Find position of component in surface charge data
|
|
3817
|
+
*/
|
|
3818
|
+
i = -1;
|
|
3819
|
+
for (k = 0; k < count_unknowns; k++)
|
|
3820
|
+
{
|
|
3821
|
+
if (x[k]->type != SURFACE_CB)
|
|
3822
|
+
continue;
|
|
3823
|
+
cxxSurfaceCharge *charge_ptr = use.Get_surface_ptr()->Find_charge(x[k]->surface_charge);
|
|
3824
|
+
i++;
|
|
3825
|
+
/*
|
|
3826
|
+
* Loop through all surface components, calculate each H2O surface (diffuse layer),
|
|
3827
|
+
* H2O aq, and H2O bulk (diffuse layers plus aqueous).
|
|
3828
|
+
*/
|
|
3829
|
+
mass_water_surface = charge_ptr->Get_mass_water();
|
|
3830
|
+
sum = 0;
|
|
3831
|
+
for (j = 0; j < (int)this->s_x.size(); j++)
|
|
3832
|
+
{
|
|
3833
|
+
count_elts = 0;
|
|
3834
|
+
paren_count = 0;
|
|
3835
|
+
if (s_x[i]->next_secondary.size() != 0)
|
|
3836
|
+
{
|
|
3837
|
+
add_elt_list(s_x[i]->next_secondary, 1);
|
|
3838
|
+
}
|
|
3839
|
+
else
|
|
3840
|
+
{
|
|
3841
|
+
add_elt_list(s_x[i]->next_sys_total, 1);
|
|
3842
|
+
}
|
|
3843
|
+
for (l = 0; l < count_elts; l++)
|
|
3844
|
+
{
|
|
3845
|
+
if (strcmp(elt_list[l].elt->name, total_name) == 0)
|
|
3846
|
+
{
|
|
3847
|
+
coef = elt_list[l].coef;
|
|
3848
|
+
if (s_x[j]->type > H2O)
|
|
3849
|
+
continue;
|
|
3850
|
+
molality = under(s_x[j]->lm);
|
|
3851
|
+
moles_excess =
|
|
3852
|
+
mass_water_aq_x * molality *
|
|
3853
|
+
charge_ptr->Get_g_map()[s_x[j]->z].Get_g();
|
|
3854
|
+
moles_surface =
|
|
3855
|
+
mass_water_surface * molality + moles_excess;
|
|
3856
|
+
sum += moles_surface * coef;
|
|
3857
|
+
break;
|
|
3858
|
+
}
|
|
3859
|
+
}
|
|
3860
|
+
if (l >= count_elts)
|
|
3861
|
+
continue;
|
|
3862
|
+
Utilities::strcpy_safe(name, MAX_LENGTH, x[k]->master[0]->elt->name);
|
|
3863
|
+
replace("_psi", "", name);
|
|
3864
|
+
size_t count_sys = sys.size();
|
|
3865
|
+
sys.resize(count_sys + 1);
|
|
3866
|
+
sys[count_sys].name = string_duplicate(name);
|
|
3867
|
+
sys[count_sys].moles = sum;
|
|
3868
|
+
sys_tot += sys[count_sys].moles;
|
|
3869
|
+
sys[count_sys].type = string_duplicate("diff");
|
|
3870
|
+
break;
|
|
3871
|
+
}
|
|
3872
|
+
}
|
|
3873
|
+
}
|
|
3874
|
+
/*
|
|
3875
|
+
* find total moles in mineral phases
|
|
3876
|
+
*/
|
|
3877
|
+
if (use.Get_pp_assemblage_in() == TRUE && use.Get_pp_assemblage_ptr() != NULL)
|
|
3878
|
+
{
|
|
3879
|
+
for (i = 0; i < count_unknowns; i++)
|
|
3880
|
+
{
|
|
3881
|
+
if (x[i]->type != PP)
|
|
3882
|
+
continue;
|
|
3883
|
+
//std::map<std::string, cxxPPassemblageComp>::iterator it;
|
|
3884
|
+
//it = pp_assemblage_ptr->Get_pp_assemblage_comps().find(x[i]->pp_assemblage_comp_name);
|
|
3885
|
+
cxxPPassemblageComp * comp_ptr = (cxxPPassemblageComp * ) x[i]->pp_assemblage_comp_ptr;
|
|
3886
|
+
//if (it->second.Get_add_formula().size() > 0)
|
|
3887
|
+
if (comp_ptr->Get_add_formula().size() > 0)
|
|
3888
|
+
continue;
|
|
3889
|
+
count_elts = 0;
|
|
3890
|
+
paren_count = 0;
|
|
3891
|
+
int j;
|
|
3892
|
+
//class phase * phase_ptr = phase_bsearch(x[i]->pp_assemblage_comp_name, &j, FALSE);
|
|
3893
|
+
class phase * phase_ptr = x[i]->phase;
|
|
3894
|
+
add_elt_list(phase_ptr->next_sys_total, x[i]->moles);
|
|
3895
|
+
elt_list_combine();
|
|
3896
|
+
for (j = 0; j < count_elts; j++)
|
|
3897
|
+
{
|
|
3898
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3899
|
+
{
|
|
3900
|
+
size_t count_sys = sys.size();
|
|
3901
|
+
sys.resize(count_sys + 1);
|
|
3902
|
+
sys[count_sys].name =
|
|
3903
|
+
string_duplicate(phase_ptr->name);
|
|
3904
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3905
|
+
sys_tot += sys[count_sys].moles;
|
|
3906
|
+
sys[count_sys].type = string_duplicate("equi");
|
|
3907
|
+
break;
|
|
3908
|
+
}
|
|
3909
|
+
}
|
|
3910
|
+
}
|
|
3911
|
+
}
|
|
3912
|
+
/*
|
|
3913
|
+
* Solid solutions
|
|
3914
|
+
*/
|
|
3915
|
+
if (use.Get_ss_assemblage_ptr() != NULL)
|
|
3916
|
+
{
|
|
3917
|
+
std::vector<cxxSS *> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
3918
|
+
for (size_t i = 0; i < ss_ptrs.size(); i++)
|
|
3919
|
+
{
|
|
3920
|
+
cxxSS *ss_ptr = ss_ptrs[i];
|
|
3921
|
+
if (ss_ptr->Get_ss_in())
|
|
3922
|
+
{
|
|
3923
|
+
for (size_t k = 0; k < ss_ptr->Get_ss_comps().size(); k++)
|
|
3924
|
+
{
|
|
3925
|
+
cxxSScomp *comp_ptr = &(ss_ptr->Get_ss_comps()[k]);
|
|
3926
|
+
int l;
|
|
3927
|
+
class phase *phase_ptr = phase_bsearch(comp_ptr->Get_name().c_str(), &l, FALSE);
|
|
3928
|
+
count_elts = 0;
|
|
3929
|
+
paren_count = 0;
|
|
3930
|
+
add_elt_list(phase_ptr->next_sys_total,
|
|
3931
|
+
comp_ptr->Get_moles());
|
|
3932
|
+
elt_list_combine();
|
|
3933
|
+
for (j = 0; j < count_elts; j++)
|
|
3934
|
+
{
|
|
3935
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
3936
|
+
{
|
|
3937
|
+
size_t count_sys = sys.size();
|
|
3938
|
+
sys.resize(count_sys + 1);
|
|
3939
|
+
sys[count_sys].name =
|
|
3940
|
+
string_duplicate(phase_ptr->name);
|
|
3941
|
+
sys[count_sys].moles = elt_list[j].coef;
|
|
3942
|
+
sys_tot += sys[count_sys].moles;
|
|
3943
|
+
sys[count_sys].type = string_duplicate("s_s");
|
|
3944
|
+
break;
|
|
3945
|
+
}
|
|
3946
|
+
}
|
|
3947
|
+
}
|
|
3948
|
+
}
|
|
3949
|
+
}
|
|
3950
|
+
}
|
|
3951
|
+
/*
|
|
3952
|
+
* find total in gas phase
|
|
3953
|
+
*/
|
|
3954
|
+
if (use.Get_gas_phase_ptr() != NULL)
|
|
3955
|
+
{
|
|
3956
|
+
cxxGasPhase *gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
3957
|
+
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
|
|
3958
|
+
{
|
|
3959
|
+
class phase *phase_ptr =
|
|
3960
|
+
phase_bsearch(gas_phase_ptr->Get_gas_comps()[j].Get_phase_name().c_str(), &i, FALSE);
|
|
3961
|
+
assert(phase_ptr);
|
|
3962
|
+
if (phase_ptr->in == TRUE)
|
|
3963
|
+
{
|
|
3964
|
+
count_elts = 0;
|
|
3965
|
+
paren_count = 0;
|
|
3966
|
+
add_elt_list(phase_ptr->next_sys_total,
|
|
3967
|
+
phase_ptr->moles_x);
|
|
3968
|
+
|
|
3969
|
+
elt_list_combine();
|
|
3970
|
+
/*
|
|
3971
|
+
* Look for element
|
|
3972
|
+
*/
|
|
3973
|
+
for (size_t j1 = 0; j1 < (size_t) count_elts; j1++)
|
|
3974
|
+
{
|
|
3975
|
+
if (strcmp(elt_list[j1].elt->name, total_name) == 0)
|
|
3976
|
+
{
|
|
3977
|
+
size_t count_sys = sys.size();
|
|
3978
|
+
sys.resize(count_sys + 1);
|
|
3979
|
+
sys[count_sys].name =
|
|
3980
|
+
string_duplicate(phase_ptr->name);
|
|
3981
|
+
sys[count_sys].moles = elt_list[j1].coef;
|
|
3982
|
+
sys_tot += sys[count_sys].moles;
|
|
3983
|
+
sys[count_sys].type = string_duplicate("gas");
|
|
3984
|
+
break;
|
|
3985
|
+
}
|
|
3986
|
+
}
|
|
3987
|
+
}
|
|
3988
|
+
}
|
|
3989
|
+
}
|
|
3990
|
+
return (OK);
|
|
3991
|
+
}
|
|
3992
|
+
/* ---------------------------------------------------------------------- */
|
|
3993
|
+
int Phreeqc::
|
|
3994
|
+
solution_number(void)
|
|
3995
|
+
/* ---------------------------------------------------------------------- */
|
|
3996
|
+
{
|
|
3997
|
+
Phreeqc * PhreeqcPtr = this;
|
|
3998
|
+
int soln_no = -999;
|
|
3999
|
+
if (PhreeqcPtr->state == TRANSPORT)
|
|
4000
|
+
{
|
|
4001
|
+
soln_no = PhreeqcPtr->cell_no;
|
|
4002
|
+
}
|
|
4003
|
+
else if (PhreeqcPtr->state == PHAST)
|
|
4004
|
+
{
|
|
4005
|
+
soln_no = PhreeqcPtr->cell_no;
|
|
4006
|
+
}
|
|
4007
|
+
else if (PhreeqcPtr->state == ADVECTION)
|
|
4008
|
+
{
|
|
4009
|
+
soln_no = PhreeqcPtr->cell_no;
|
|
4010
|
+
}
|
|
4011
|
+
else if (PhreeqcPtr->state < REACTION)
|
|
4012
|
+
{
|
|
4013
|
+
soln_no = PhreeqcPtr->use.Get_solution_ptr()->Get_n_user();
|
|
4014
|
+
}
|
|
4015
|
+
else
|
|
4016
|
+
{
|
|
4017
|
+
if (PhreeqcPtr->use.Get_mix_in())
|
|
4018
|
+
{
|
|
4019
|
+
soln_no = PhreeqcPtr->use.Get_n_mix_user();
|
|
4020
|
+
}
|
|
4021
|
+
else
|
|
4022
|
+
{
|
|
4023
|
+
soln_no = PhreeqcPtr->use.Get_n_solution_user();
|
|
4024
|
+
}
|
|
4025
|
+
}
|
|
4026
|
+
return soln_no;
|
|
4027
|
+
}
|
|
4028
|
+
/* ---------------------------------------------------------------------- */
|
|
4029
|
+
LDBLE Phreeqc::
|
|
4030
|
+
solution_sum_secondary(const char *total_name)
|
|
4031
|
+
/* ---------------------------------------------------------------------- */
|
|
4032
|
+
{
|
|
4033
|
+
/*
|
|
4034
|
+
* Provides total moles in system and lists of species/phases in sort order
|
|
4035
|
+
*/
|
|
4036
|
+
int i, j;
|
|
4037
|
+
LDBLE sum;
|
|
4038
|
+
/*
|
|
4039
|
+
* find total moles in aq, surface, and exchange
|
|
4040
|
+
*/
|
|
4041
|
+
sum = 0;
|
|
4042
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
4043
|
+
{
|
|
4044
|
+
if (s_x[i]->type > H2O)
|
|
4045
|
+
continue;
|
|
4046
|
+
count_elts = 0;
|
|
4047
|
+
paren_count = 0;
|
|
4048
|
+
if (s_x[i]->next_secondary.size() != 0)
|
|
4049
|
+
{
|
|
4050
|
+
add_elt_list(s_x[i]->next_secondary, s_x[i]->moles);
|
|
4051
|
+
}
|
|
4052
|
+
else
|
|
4053
|
+
{
|
|
4054
|
+
add_elt_list(s_x[i]->next_sys_total, s_x[i]->moles);
|
|
4055
|
+
}
|
|
4056
|
+
elt_list_combine();
|
|
4057
|
+
/*
|
|
4058
|
+
* Look for element
|
|
4059
|
+
*/
|
|
4060
|
+
for (j = 0; j < count_elts; j++)
|
|
4061
|
+
{
|
|
4062
|
+
if (strcmp(elt_list[j].elt->name, total_name) == 0)
|
|
4063
|
+
{
|
|
4064
|
+
sum += elt_list[j].coef;
|
|
4065
|
+
break;
|
|
4066
|
+
}
|
|
4067
|
+
}
|
|
4068
|
+
}
|
|
4069
|
+
return (sum);
|
|
4070
|
+
}
|
|
4071
|
+
|
|
4072
|
+
/* ---------------------------------------------------------------------- */
|
|
4073
|
+
int Phreeqc::
|
|
4074
|
+
system_species_compare(const void *ptr1, const void *ptr2)
|
|
4075
|
+
/* ---------------------------------------------------------------------- */
|
|
4076
|
+
{
|
|
4077
|
+
const class system_species *a, *b;
|
|
4078
|
+
|
|
4079
|
+
a = (const class system_species *) ptr1;
|
|
4080
|
+
b = (const class system_species *) ptr2;
|
|
4081
|
+
if (a->moles < b->moles)
|
|
4082
|
+
return (1);
|
|
4083
|
+
if (a->moles > b->moles)
|
|
4084
|
+
return (-1);
|
|
4085
|
+
return (0);
|
|
4086
|
+
}
|
|
4087
|
+
int Phreeqc::
|
|
4088
|
+
system_species_compare_name(const void* ptr1, const void* ptr2)
|
|
4089
|
+
/* ---------------------------------------------------------------------- */
|
|
4090
|
+
{
|
|
4091
|
+
const class system_species* a, * b;
|
|
4092
|
+
|
|
4093
|
+
a = (const class system_species*)ptr1;
|
|
4094
|
+
b = (const class system_species*)ptr2;
|
|
4095
|
+
return (strncmp(a->name, b->name, MAX_LENGTH));
|
|
4096
|
+
}
|
|
4097
|
+
|
|
4098
|
+
/* ---------------------------------------------------------------------- */
|
|
4099
|
+
int Phreeqc::
|
|
4100
|
+
system_total_solids(cxxExchange *exchange_ptr,
|
|
4101
|
+
cxxPPassemblage *pp_assemblage_ptr,
|
|
4102
|
+
cxxGasPhase *gas_phase_ptr,
|
|
4103
|
+
cxxSSassemblage *ss_assemblage_ptr,
|
|
4104
|
+
cxxSurface *surface_ptr)
|
|
4105
|
+
/* ---------------------------------------------------------------------- */
|
|
4106
|
+
{
|
|
4107
|
+
/*
|
|
4108
|
+
* Provides total moles in solid phases
|
|
4109
|
+
*/
|
|
4110
|
+
count_elts = 0;
|
|
4111
|
+
paren_count = 0;
|
|
4112
|
+
/*
|
|
4113
|
+
* find total moles in exchanger
|
|
4114
|
+
*/
|
|
4115
|
+
if (exchange_ptr != NULL)
|
|
4116
|
+
{
|
|
4117
|
+
for (size_t i = 0; i < exchange_ptr->Get_exchange_comps().size(); i++)
|
|
4118
|
+
{
|
|
4119
|
+
add_elt_list(exchange_ptr->Get_exchange_comps()[i].Get_totals(), 1.0);
|
|
4120
|
+
}
|
|
4121
|
+
}
|
|
4122
|
+
if (surface_ptr != NULL)
|
|
4123
|
+
{
|
|
4124
|
+
for (size_t i = 0; i < surface_ptr->Get_surface_comps().size(); i++)
|
|
4125
|
+
{
|
|
4126
|
+
add_elt_list(surface_ptr->Get_surface_comps()[i].Get_totals(), 1.0);
|
|
4127
|
+
}
|
|
4128
|
+
}
|
|
4129
|
+
if (ss_assemblage_ptr != NULL)
|
|
4130
|
+
{
|
|
4131
|
+
std::vector<cxxSS *> ss_ptrs = ss_assemblage_ptr->Vectorize();
|
|
4132
|
+
for (size_t i = 0; i < ss_ptrs.size(); i++)
|
|
4133
|
+
{
|
|
4134
|
+
cxxSS *ss_ptr = ss_ptrs[i];
|
|
4135
|
+
for (size_t j = 0; j < ss_ptr->Get_ss_comps().size(); j++)
|
|
4136
|
+
{
|
|
4137
|
+
cxxSScomp *comp_ptr = &(ss_ptr->Get_ss_comps()[j]);
|
|
4138
|
+
int l;
|
|
4139
|
+
class phase *phase_ptr = phase_bsearch(comp_ptr->Get_name().c_str(), &l, FALSE);
|
|
4140
|
+
add_elt_list(phase_ptr->next_elt,
|
|
4141
|
+
comp_ptr->Get_moles());
|
|
4142
|
+
}
|
|
4143
|
+
}
|
|
4144
|
+
}
|
|
4145
|
+
if (gas_phase_ptr != NULL)
|
|
4146
|
+
{
|
|
4147
|
+
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
|
|
4148
|
+
{
|
|
4149
|
+
int i;
|
|
4150
|
+
class phase *phase_ptr =
|
|
4151
|
+
phase_bsearch(gas_phase_ptr->Get_gas_comps()[j].Get_phase_name().c_str(), &i, FALSE);
|
|
4152
|
+
add_elt_list(phase_ptr->next_elt, gas_phase_ptr->Get_gas_comps()[j].Get_moles());
|
|
4153
|
+
}
|
|
4154
|
+
}
|
|
4155
|
+
if (pp_assemblage_ptr != NULL)
|
|
4156
|
+
{
|
|
4157
|
+
std::map<std::string, cxxPPassemblageComp>::iterator it;
|
|
4158
|
+
it = pp_assemblage_ptr->Get_pp_assemblage_comps().begin();
|
|
4159
|
+
for ( ; it != pp_assemblage_ptr->Get_pp_assemblage_comps().end(); it++)
|
|
4160
|
+
{
|
|
4161
|
+
int j;
|
|
4162
|
+
class phase * phase_ptr = phase_bsearch(it->first.c_str(), &j, FALSE);
|
|
4163
|
+
add_elt_list(phase_ptr->next_elt,
|
|
4164
|
+
it->second.Get_moles());
|
|
4165
|
+
}
|
|
4166
|
+
}
|
|
4167
|
+
elt_list_combine();
|
|
4168
|
+
return (OK);
|
|
4169
|
+
}
|
|
4170
|
+
|
|
4171
|
+
LDBLE Phreeqc::
|
|
4172
|
+
iso_value(const char *total_name)
|
|
4173
|
+
{
|
|
4174
|
+
int j;
|
|
4175
|
+
char token[MAX_LENGTH];
|
|
4176
|
+
char my_total_name[MAX_LENGTH];
|
|
4177
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "");
|
|
4178
|
+
Utilities::strcpy_safe(my_total_name, MAX_LENGTH, total_name);
|
|
4179
|
+
while (replace(" ","_",my_total_name));
|
|
4180
|
+
for (j = 0; j < (int)isotope_ratio.size(); j++)
|
|
4181
|
+
{
|
|
4182
|
+
if (isotope_ratio[j]->ratio == MISSING)
|
|
4183
|
+
continue;
|
|
4184
|
+
if (strcmp(my_total_name, isotope_ratio[j]->name) != 0)
|
|
4185
|
+
continue;
|
|
4186
|
+
return (isotope_ratio[j]->converted_ratio);
|
|
4187
|
+
}
|
|
4188
|
+
Utilities::strcpy_safe(my_total_name, MAX_LENGTH, total_name);
|
|
4189
|
+
while (replace("[","",my_total_name));
|
|
4190
|
+
while (replace("]","",my_total_name));
|
|
4191
|
+
Utilities::strcat_safe(token, MAX_LENGTH, "R(");
|
|
4192
|
+
Utilities::strcat_safe(token, MAX_LENGTH, my_total_name);
|
|
4193
|
+
Utilities::strcat_safe(token, MAX_LENGTH, ")");
|
|
4194
|
+
for (j = 0; j < (int)isotope_ratio.size(); j++)
|
|
4195
|
+
{
|
|
4196
|
+
if (isotope_ratio[j]->ratio == MISSING)
|
|
4197
|
+
continue;
|
|
4198
|
+
if (strcmp(token, isotope_ratio[j]->name) != 0)
|
|
4199
|
+
continue;
|
|
4200
|
+
return (isotope_ratio[j]->converted_ratio);
|
|
4201
|
+
}
|
|
4202
|
+
return -1000.;
|
|
4203
|
+
}
|
|
4204
|
+
|
|
4205
|
+
char * Phreeqc::
|
|
4206
|
+
iso_unit(const char *total_name)
|
|
4207
|
+
{
|
|
4208
|
+
int j;
|
|
4209
|
+
char token[MAX_LENGTH], unit[MAX_LENGTH];
|
|
4210
|
+
class master_isotope *master_isotope_ptr;
|
|
4211
|
+
char my_total_name[MAX_LENGTH];
|
|
4212
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "");
|
|
4213
|
+
Utilities::strcpy_safe(my_total_name, MAX_LENGTH, total_name);
|
|
4214
|
+
while (replace(" ","_",my_total_name));
|
|
4215
|
+
Utilities::strcpy_safe(unit, MAX_LENGTH, "unknown");
|
|
4216
|
+
for (j = 0; j < (int)isotope_ratio.size(); j++)
|
|
4217
|
+
{
|
|
4218
|
+
if (isotope_ratio[j]->ratio == MISSING)
|
|
4219
|
+
continue;
|
|
4220
|
+
if (strcmp(my_total_name, isotope_ratio[j]->name) != 0)
|
|
4221
|
+
continue;
|
|
4222
|
+
master_isotope_ptr = master_isotope_search(isotope_ratio[j]->isotope_name);
|
|
4223
|
+
if (master_isotope_ptr != NULL)
|
|
4224
|
+
{
|
|
4225
|
+
Utilities::strcpy_safe(unit, MAX_LENGTH, master_isotope_ptr->units);
|
|
4226
|
+
}
|
|
4227
|
+
return string_duplicate(unit);
|
|
4228
|
+
}
|
|
4229
|
+
Utilities::strcpy_safe(my_total_name, MAX_LENGTH, total_name);
|
|
4230
|
+
while (replace("[","",my_total_name));
|
|
4231
|
+
while (replace("]","",my_total_name));
|
|
4232
|
+
Utilities::strcat_safe(token, MAX_LENGTH, "R(");
|
|
4233
|
+
Utilities::strcat_safe(token, MAX_LENGTH, my_total_name);
|
|
4234
|
+
Utilities::strcat_safe(token, MAX_LENGTH, ")");
|
|
4235
|
+
for (j = 0; j < (int)isotope_ratio.size(); j++)
|
|
4236
|
+
{
|
|
4237
|
+
if (isotope_ratio[j]->ratio == MISSING)
|
|
4238
|
+
continue;
|
|
4239
|
+
if (strcmp(token, isotope_ratio[j]->name) != 0)
|
|
4240
|
+
continue;
|
|
4241
|
+
master_isotope_ptr = master_isotope_search(isotope_ratio[j]->isotope_name);
|
|
4242
|
+
if (master_isotope_ptr != NULL)
|
|
4243
|
+
{
|
|
4244
|
+
Utilities::strcpy_safe(unit, MAX_LENGTH, master_isotope_ptr->units);
|
|
4245
|
+
}
|
|
4246
|
+
return string_duplicate(unit);
|
|
4247
|
+
}
|
|
4248
|
+
return string_duplicate(unit);
|
|
4249
|
+
}
|
|
4250
|
+
|
|
4251
|
+
int Phreeqc::
|
|
4252
|
+
basic_compile(const char *commands, void **lnbase, void **vbase, void **lpbase)
|
|
4253
|
+
{
|
|
4254
|
+
return this->basic_interpreter->basic_compile(commands, lnbase, vbase, lpbase);
|
|
4255
|
+
}
|
|
4256
|
+
|
|
4257
|
+
int Phreeqc::
|
|
4258
|
+
basic_run(char *commands, void *lnbase, void *vbase, void *lpbase)
|
|
4259
|
+
{
|
|
4260
|
+
return this->basic_interpreter->basic_run(commands, lnbase, vbase, lpbase);
|
|
4261
|
+
}
|
|
4262
|
+
|
|
4263
|
+
void Phreeqc::
|
|
4264
|
+
basic_free(void)
|
|
4265
|
+
{
|
|
4266
|
+
delete this->basic_interpreter;
|
|
4267
|
+
this->basic_interpreter = NULL;
|
|
4268
|
+
}
|
|
4269
|
+
|
|
4270
|
+
#if defined(SWIG) || defined(SWIG_IPHREEQC)
|
|
4271
|
+
|
|
4272
|
+
#include "BasicCallback.h"
|
|
4273
|
+
|
|
4274
|
+
double Phreeqc::
|
|
4275
|
+
basic_callback(double x1, double x2, const char * str)
|
|
4276
|
+
{
|
|
4277
|
+
if (this->basicCallback)
|
|
4278
|
+
{
|
|
4279
|
+
return this->basicCallback->Callback(x1, x2, str);
|
|
4280
|
+
}
|
|
4281
|
+
return 0.0;
|
|
4282
|
+
}
|
|
4283
|
+
|
|
4284
|
+
#else /* defined(SWIG) || defined(SWIG_IPHREEQC) */
|
|
4285
|
+
|
|
4286
|
+
#ifdef IPHREEQC_NO_FORTRAN_MODULE
|
|
4287
|
+
double Phreeqc::
|
|
4288
|
+
basic_callback(double x1, double x2, const char * str)
|
|
4289
|
+
#else
|
|
4290
|
+
double Phreeqc::
|
|
4291
|
+
basic_callback(double x1, double x2, const char * str)
|
|
4292
|
+
#endif
|
|
4293
|
+
{
|
|
4294
|
+
double local_x1 = x1;
|
|
4295
|
+
double local_x2 = x2;
|
|
4296
|
+
|
|
4297
|
+
if (basic_callback_ptr != NULL)
|
|
4298
|
+
{
|
|
4299
|
+
return (*basic_callback_ptr) (x1, x2, str, basic_callback_cookie);
|
|
4300
|
+
}
|
|
4301
|
+
if (basic_fortran_callback_ptr != NULL)
|
|
4302
|
+
{
|
|
4303
|
+
#ifdef IPHREEQC_NO_FORTRAN_MODULE
|
|
4304
|
+
return (*basic_fortran_callback_ptr) (&local_x1, &local_x2, str, (int) strlen(str));
|
|
4305
|
+
#else
|
|
4306
|
+
return (*basic_fortran_callback_ptr) (&local_x1, &local_x2, str, (int) strlen(str));
|
|
4307
|
+
#endif
|
|
4308
|
+
}
|
|
4309
|
+
return 0;
|
|
4310
|
+
}
|
|
4311
|
+
|
|
4312
|
+
void
|
|
4313
|
+
Phreeqc::register_basic_callback(double (*fcn)(double x1, double x2, const char *str, void *cookie), void *cookie1)
|
|
4314
|
+
{
|
|
4315
|
+
this->basic_callback_ptr = fcn;
|
|
4316
|
+
this->basic_callback_cookie = cookie1;
|
|
4317
|
+
}
|
|
4318
|
+
#ifdef IPHREEQC_NO_FORTRAN_MODULE
|
|
4319
|
+
void
|
|
4320
|
+
Phreeqc::register_fortran_basic_callback(double ( *fcn)(double *x1, double *x2, const char *str, size_t l))
|
|
4321
|
+
{
|
|
4322
|
+
this->basic_fortran_callback_ptr = fcn;
|
|
4323
|
+
}
|
|
4324
|
+
#else
|
|
4325
|
+
|
|
4326
|
+
void
|
|
4327
|
+
Phreeqc::register_fortran_basic_callback(double ( *fcn)(double *x1, double *x2, const char *str, int l))
|
|
4328
|
+
{
|
|
4329
|
+
this->basic_fortran_callback_ptr = fcn;
|
|
4330
|
+
}
|
|
4331
|
+
#endif
|
|
4332
|
+
|
|
4333
|
+
#endif /* defined(SWIG) || defined(SWIG_IPHREEQC) */
|