py2ls 0.1.10.12__py3-none-any.whl → 0.2.7.10__py3-none-any.whl

py2ls/data/mygenes_fields_241022.txt

@@ -0,0 +1,355 @@
+accession	 	object	 
+accession.genomic	 	text	 
+accession.protein	 	text	 
+accession.rna	 	text	 
+accession.translation	 	object	 
+agr	 	object	 
+agr.orthologs	 	object	 
+agr.orthologs.algorithmsmatch	 	integer	 
+agr.orthologs.geneid	 	keyword	 
+agr.orthologs.isbestrevscore	 	boolean	 
+agr.orthologs.isbestscore	 	boolean	 
+agr.orthologs.outofalgorithms	 	integer	 
+agr.orthologs.symbol	 	keyword	 
+agr.orthologs.taxid	 	integer	 
+alias	 	keyword	 
+AllianceGenome	 	keyword	 
+AnimalQTLdb	 	text	 
+biocarta	 	text	 
+chembl	 	object	 
+chembl.chembl_target	 	keyword	 
+chembl.uniprot_accession	 	keyword	 
+clingen	 	object	 
+clingen.clinical_validity	 	object	 
+clingen.clinical_validity.classification	 	keyword	 
+clingen.clinical_validity.classification_date	 	date	 
+clingen.clinical_validity.disease_label	 	text	 
+clingen.clinical_validity.gcep	 	text	 
+clingen.clinical_validity.moi	 	keyword	 
+clingen.clinical_validity.mondo	 	keyword	 
+clingen.clinical_validity.online_report	 	text	 
+clingen.clinical_validity.sop	 	keyword	 
+ec	 	keyword	 
+ensembl	 	object	 
+ensembl.gene	 	keyword	 
+ensembl.protein	 	keyword	 
+ensembl.transcript	 	keyword	 
+ensembl.translation	 	object	 
+ensembl.type_of_gene	 	keyword	 
+entrezgene	 	keyword	 
+exac	 	object	 
+exac.all	 	object	 
+exac.bp	 	integer	 
+exac.cds_end	 	integer	 
+exac.cds_start	 	integer	 
+exac.n_exons	 	integer	 
+exac.nonpsych	 	object	 
+exac.nontcga	 	object	 
+exac.transcript	 	text	 
+exons	 	object	 
+exons_hg19	 	object	 
+exons_mm10	 	object	 
+exons_mm9	 	object	 
+FLYBASE	 	keyword	 
+generif	 	object	 
+generif.pubmed	 	long	 
+generif.text	 	text	 
+genomic_pos	 	object	 
+genomic_pos.chr	 	keyword	 
+genomic_pos.end	 	long	 
+genomic_pos.start	 	long	 
+genomic_pos.strand	 	byte	 
+genomic_pos_hg19	 	object	 
+genomic_pos_hg19.chr	 	keyword	 
+genomic_pos_hg19.end	 	long	 
+genomic_pos_hg19.start	 	long	 
+genomic_pos_hg19.strand	 	byte	 
+genomic_pos_mm9	 	object	 
+genomic_pos_mm9.chr	 	keyword	 
+genomic_pos_mm9.end	 	long	 
+genomic_pos_mm9.start	 	long	 
+genomic_pos_mm9.strand	 	byte	 
+go	 	object	 
+go.BP	 	object	 
+go.BP.category	 	keyword	 
+go.BP.evidence	 	keyword	 
+go.BP.id	 	keyword	 
+go.BP.pubmed	 	long	 
+go.BP.term	 	text	 
+go.CC	 	object	 
+go.CC.category	 	keyword	 
+go.CC.evidence	 	keyword	 
+go.CC.id	 	keyword	 
+go.CC.pubmed	 	long	 
+go.CC.term	 	text	 
+go.MF	 	object	 
+go.MF.category	 	keyword	 
+go.MF.evidence	 	keyword	 
+go.MF.id	 	keyword	 
+go.MF.pubmed	 	long	 
+go.MF.term	 	text	 
+HGNC	 	keyword	 
+homologene	 	object	 
+homologene.genes	 	long	 
+homologene.id	 	long	 
+HPRD	 	keyword	 
+humancyc	 	text	 
+interpro	 	object	 
+interpro.desc	 	text	 
+interpro.id	 	keyword	 
+interpro.short_desc	 	text	 
+ipi	 	keyword	 
+kegg	 	text	 
+locus_tag	 	keyword	 
+map_location	 	text	 
+MGI	 	keyword	 
+MIM	 	keyword	 
+miRBase	 	keyword	 
+mousecyc	 	text	 
+name	 	text	 
+netpath	 	text	 
+other_names	 	text	 
+pantherdb	 	object	 
+pantherdb.Araport	 	keyword	 
+pantherdb.dictyBase	 	keyword	 
+pantherdb.EcoGene	 	keyword	 
+pantherdb.Ensembl	 	keyword	 
+pantherdb.EnsemblGenome	 	keyword	 
+pantherdb.FlyBase	 	keyword	 
+pantherdb.Gene	 	keyword	 
+pantherdb.Gene_Name	 	keyword	 
+pantherdb.Gene_OrderedLocusName	 	keyword	 
+pantherdb.Gene_ORFName	 	keyword	 
+pantherdb.GeneID	 	keyword	 
+pantherdb.HGNC	 	keyword	 
+pantherdb.MGI	 	keyword	 
+pantherdb.ortholog	 	object	 
+pantherdb.ortholog.Araport	 	keyword	 
+pantherdb.ortholog.dictyBase	 	keyword	 
+pantherdb.ortholog.EcoGene	 	keyword	 
+pantherdb.ortholog.Ensembl	 	keyword	 
+pantherdb.ortholog.EnsemblGenome	 	keyword	 
+pantherdb.ortholog.FlyBase	 	keyword	 
+pantherdb.ortholog.Gene	 	keyword	 
+pantherdb.ortholog.Gene_Name	 	keyword	 
+pantherdb.ortholog.Gene_OrderedLocusName	 	keyword	 
+pantherdb.ortholog.Gene_ORFName	 	keyword	 
+pantherdb.ortholog.GeneCards	 	keyword	 
+pantherdb.ortholog.GeneID	 	keyword	 
+pantherdb.ortholog.HGNC	 	keyword	 
+pantherdb.ortholog.MGI	 	keyword	 
+pantherdb.ortholog.ortholog_type	 	keyword	 
+pantherdb.ortholog.panther_family	 	keyword	 
+pantherdb.ortholog.PomBase	 	keyword	 
+pantherdb.ortholog.RGD	 	keyword	 
+pantherdb.ortholog.SGD	 	keyword	 
+pantherdb.ortholog.TAIR	 	keyword	 
+pantherdb.ortholog.taxid	 	integer	 
+pantherdb.ortholog.uniprot_kb	 	keyword	 
+pantherdb.ortholog.WormBase	 	keyword	 
+pantherdb.ortholog.ZFIN	 	keyword	 
+pantherdb.PomBase	 	keyword	 
+pantherdb.RGD	 	keyword	 
+pantherdb.SGD	 	keyword	 
+pantherdb.TAIR	 	keyword	 
+pantherdb.uniprot_kb	 	keyword	 
+pantherdb.WormBase	 	keyword	 
+pantherdb.ZFIN	 	keyword	 
+pathway	 	object	 
+pathway.biocarta	 	object	 
+pathway.biocarta.id	 	text	 
+pathway.biocarta.name	 	text	 
+pathway.humancyc	 	object	 
+pathway.humancyc.id	 	text	 
+pathway.humancyc.name	 	text	 
+pathway.kegg	 	object	 
+pathway.kegg.id	 	text	 
+pathway.kegg.name	 	text	 
+pathway.mousecyc	 	object	 
+pathway.mousecyc.id	 	text	 
+pathway.mousecyc.name	 	text	 
+pathway.netpath	 	object	 
+pathway.netpath.id	 	text	 
+pathway.netpath.name	 	text	 
+pathway.pharmgkb	 	object	 
+pathway.pharmgkb.id	 	text	 
+pathway.pharmgkb.name	 	text	 
+pathway.pid	 	object	 
+pathway.pid.id	 	text	 
+pathway.pid.name	 	text	 
+pathway.reactome	 	object	 
+pathway.reactome.id	 	text	 
+pathway.reactome.name	 	text	 
+pathway.smpdb	 	object	 
+pathway.smpdb.id	 	text	 
+pathway.smpdb.name	 	text	 
+pathway.wikipathways	 	object	 
+pathway.wikipathways.id	 	text	 
+pathway.wikipathways.name	 	text	 
+pathway.yeastcyc	 	object	 
+pathway.yeastcyc.id	 	text	 
+pathway.yeastcyc.name	 	text	 
+pdb	 	keyword	 
+pfam	 	keyword	 
+pharmgkb	 	keyword	 
+pharos	 	object	 
+pharos.target_id	 	integer	 
+pharos.tdl	 	keyword	 
+pid	 	text	 
+pir	 	keyword	 
+prosite	 	keyword	 
+RATMAP	 	keyword	 
+reactome	 	text	 
+reagent	 	object	 
+reagent.CM-LibrX-no-seq	 	object	 
+reagent.CM-LibrX-no-seq.id	 	keyword	 
+reagent.CM-LibrX-no-seq.relationship	 	text	 
+reagent.CondMedia_CM_LibrAB	 	object	 
+reagent.CondMedia_CM_LibrAB.id	 	keyword	 
+reagent.CondMedia_CM_LibrAB.relationship	 	text	 
+reagent.GNF_hs-druggable_lenti-shRNA	 	object	 
+reagent.GNF_hs-druggable_lenti-shRNA.id	 	keyword	 
+reagent.GNF_hs-druggable_lenti-shRNA.relationship	 	text	 
+reagent.GNF_hs-druggable_plasmid-shRNA	 	object	 
+reagent.GNF_hs-druggable_plasmid-shRNA.id	 	keyword	 
+reagent.GNF_hs-druggable_plasmid-shRNA.relationship	 	text	 
+reagent.GNF_hs-druggable_siRNA	 	object	 
+reagent.GNF_hs-druggable_siRNA.id	 	keyword	 
+reagent.GNF_hs-druggable_siRNA.relationship	 	text	 
+reagent.GNF_hs-GPCR_IDT-siRNA	 	object	 
+reagent.GNF_hs-GPCR_IDT-siRNA.id	 	keyword	 
+reagent.GNF_hs-GPCR_IDT-siRNA.relationship	 	text	 
+reagent.GNF_hs-oncomine_IDT-siRNA	 	object	 
+reagent.GNF_hs-oncomine_IDT-siRNA.id	 	keyword	 
+reagent.GNF_hs-oncomine_IDT-siRNA.relationship	 	text	 
+reagent.GNF_hs-ORFeome1_1_reads	 	object	 
+reagent.GNF_hs-ORFeome1_1_reads.id	 	keyword	 
+reagent.GNF_hs-ORFeome1_1_reads.relationship	 	text	 
+reagent.GNF_hs-Origene	 	object	 
+reagent.GNF_hs-Origene.id	 	keyword	 
+reagent.GNF_hs-Origene.relationship	 	text	 
+reagent.GNF_hs-pkinase_IDT-siRNA	 	object	 
+reagent.GNF_hs-pkinase_IDT-siRNA.id	 	keyword	 
+reagent.GNF_hs-pkinase_IDT-siRNA.relationship	 	text	 
+reagent.GNF_hs_LentiORF-HA-MYC	 	object	 
+reagent.GNF_hs_LentiORF-HA-MYC.id	 	keyword	 
+reagent.GNF_hs_LentiORF-HA-MYC.relationship	 	text	 
+reagent.GNF_hs_LentiORF-Jred	 	object	 
+reagent.GNF_hs_LentiORF-Jred.id	 	keyword	 
+reagent.GNF_hs_LentiORF-Jred.relationship	 	text	 
+reagent.GNF_mm+hs-MGC	 	object	 
+reagent.GNF_mm+hs-MGC.id	 	keyword	 
+reagent.GNF_mm+hs-MGC.relationship	 	text	 
+reagent.GNF_mm+hs_RetroCDNA	 	object	 
+reagent.GNF_mm+hs_RetroCDNA.id	 	keyword	 
+reagent.GNF_mm+hs_RetroCDNA.relationship	 	text	 
+reagent.GNF_mm-GIPZ_shRNA	 	object	 
+reagent.GNF_mm-GIPZ_shRNA.id	 	keyword	 
+reagent.GNF_mm-GIPZ_shRNA.relationship	 	text	 
+reagent.GNF_mm-kinase_lenti-shRNA	 	object	 
+reagent.GNF_mm-kinase_lenti-shRNA.id	 	keyword	 
+reagent.GNF_mm-kinase_lenti-shRNA.relationship	 	text	 
+reagent.GNF_mm-kinase_plasmid-shRNA	 	object	 
+reagent.GNF_mm-kinase_plasmid-shRNA.id	 	keyword	 
+reagent.GNF_mm-kinase_plasmid-shRNA.relationship	 	text	 
+reagent.GNF_mm-TLR_lenti_shRNA	 	object	 
+reagent.GNF_mm-TLR_lenti_shRNA.id	 	keyword	 
+reagent.GNF_mm-TLR_lenti_shRNA.relationship	 	text	 
+reagent.GNF_Qia_hs-genome_v1_siRNA	 	object	 
+reagent.GNF_Qia_hs-genome_v1_siRNA.id	 	keyword	 
+reagent.GNF_Qia_hs-genome_v1_siRNA.relationship	 	text	 
+reagent.IDT_27mer_hs_ATPase_siRNAs	 	object	 
+reagent.IDT_27mer_hs_ATPase_siRNAs.id	 	keyword	 
+reagent.IDT_27mer_hs_ATPase_siRNAs.relationship	 	text	 
+reagent.Invitrogen_IVTHSSIPKv2	 	object	 
+reagent.Invitrogen_IVTHSSIPKv2.id	 	keyword	 
+reagent.Invitrogen_IVTHSSIPKv2.relationship	 	text	 
+reagent.MasterSecretomicsList	 	object	 
+reagent.MasterSecretomicsList.id	 	keyword	 
+reagent.MasterSecretomicsList.relationship	 	text	 
+reagent.NIBRI_hs-Secretome_pDEST	 	object	 
+reagent.NIBRI_hs-Secretome_pDEST.id	 	keyword	 
+reagent.NIBRI_hs-Secretome_pDEST.relationship	 	text	 
+reagent.NOVART_hs-genome_siRNA	 	object	 
+reagent.NOVART_hs-genome_siRNA.id	 	keyword	 
+reagent.NOVART_hs-genome_siRNA.relationship	 	text	 
+reagent.Qiagen_mouse_QMIHSINHIBv1	 	object	 
+reagent.Qiagen_mouse_QMIHSINHIBv1.id	 	keyword	 
+reagent.Qiagen_mouse_QMIHSINHIBv1.relationship	 	text	 
+reagent.Qiagen_mouse_QMIHSMIMv1	 	object	 
+reagent.Qiagen_mouse_QMIHSMIMv1.id	 	keyword	 
+reagent.Qiagen_mouse_QMIHSMIMv1.relationship	 	text	 
+refseq	 	object	 
+refseq.genomic	 	text	 
+refseq.protein	 	text	 
+refseq.rna	 	text	 
+refseq.translation	 	object	 
+reporter	 	object	 
+reporter.AraGene-1_0	 	keyword	 
+reporter.BovGene-1_0	 	keyword	 
+reporter.CanGene-1_0	 	keyword	 
+reporter.ChiGene-1_0	 	keyword	 
+reporter.CynGene-1_0	 	keyword	 
+reporter.CyRGene-1_0	 	keyword	 
+reporter.DroGene-1_0	 	keyword	 
+reporter.EleGene-1_0	 	keyword	 
+reporter.EquGene-1_0	 	keyword	 
+reporter.FelGene-1_0	 	keyword	 
+reporter.GNF1H	 	keyword	 
+reporter.GNF1M	 	keyword	 
+reporter.GuiGene-1_0	 	keyword	 
+reporter.HG-U133_Plus_2	 	keyword	 
+reporter.HG-U95Av2	 	keyword	 
+reporter.HG-U95B	 	keyword	 
+reporter.HTA-2_0	 	keyword	 
+reporter.HuEx-1_0	 	keyword	 
+reporter.HuGene-1_1	 	keyword	 
+reporter.HuGene-2_1	 	keyword	 
+reporter.MarGene-1_0	 	keyword	 
+reporter.MG-U74Av2	 	keyword	 
+reporter.MG-U74Bv2	 	keyword	 
+reporter.MoEx-1_0	 	keyword	 
+reporter.MoGene-1_1	 	keyword	 
+reporter.MoGene-2_1	 	keyword	 
+reporter.Mouse430_2	 	keyword	 
+reporter.MTA-1_0	 	keyword	 
+reporter.PorGene-1_0	 	keyword	 
+reporter.RabGene-1_0	 	keyword	 
+reporter.RaEx-1_0	 	keyword	 
+reporter.RaGene-1_1	 	keyword	 
+reporter.RaGene-2_1	 	keyword	 
+reporter.Rat230_2	 	keyword	 
+reporter.RCnGene-1_0	 	keyword	 
+reporter.RG-U34A	 	keyword	 
+reporter.RG-U34B	 	keyword	 
+reporter.RheGene-1_0	 	keyword	 
+reporter.RJpGene-1_0	 	keyword	 
+reporter.RUSGene-1_0	 	keyword	 
+reporter.snowball	 	keyword	 
+reporter.SoyGene-1_0	 	keyword	 
+reporter.ZebGene-1_0	 	keyword	 
+retired	 	long	 
+RGD	 	keyword	 
+SGD	 	keyword	 
+smpdb	 	text	 
+summary	 	text	 
+symbol	 	keyword	 
+TAIR	 	keyword	 
+taxid	 	integer	 
+type_of_gene	 	keyword	 
+umls	 	object	 
+umls.cui	 	keyword	 
+umls.protein_cui	 	keyword	 
+unigene	 	keyword	 
+unii	 	keyword	 
+uniprot	 	object	 
+uniprot.Swiss-Prot	 	keyword	 
+uniprot.TrEMBL	 	keyword	 
+Vega	 	text	 
+wikipathways	 	text	 
+wikipedia	 	object	 
+wikipedia.url_stub	 	text	 
+WormBase	 	keyword	 
+Xenbase	 	keyword	 
+yeastcyc	 	text	 
+ZFIN

py2ls/data/re_common_pattern.json

@@ -0,0 +1,173 @@
+{
+    "uppercase": "[A-Z]+",
+    "lowercase": "[a-z]+",
+    "digits":"[+-]?\\d+(?:[.,]\\d+)?(?:[eE][+-]?\\d+)?%?",
+    "number":"[+-]?\\d+(?:[.,]\\d+)?(?:[eE][+-]?\\d+)?%?",
+    "num":"[+-]?\\d+(?:[.,]\\d+)?(?:[eE][+-]?\\d+)?%?",
+    "Ab_words": "\\b[A-Z][a-z]+\\b",
+    "bA_words": "\\b[a-z]+[A-Z]+\\b",
+    "title": "\\b(?:[A-Z][a-z]+(?:\\s+[A-Z][a-z]+)*)\\b",
+    "camelCase": "\\b[a-z]+(?:[A-Z][a-z0-9]+)+\\b",
+    "PascalCase": "\\b(?:[A-Z][a-z0-9]+)+\\b",
+    "snake_case": "\\b[a-z0-9]+(?:_[a-z0-9]+)+\\b",
+    "kebab-case": "\\b[a-z0-9]+(?:-[a-z0-9]+)+\\b",
+    "all_caps_words": "\\b[A-Z]{2,}\\b",
+    "email": "[A-Za-z0-9._%+-]+@[A-Za-z0-9.-]+\\.[A-Za-z]{2,7}",
+    "word": "(?<!\\S)[\\p{L}][\\p{L}'’-]*[\\p{L}](?!\\S)",
+    "sentence": "(?i)\\s*[^;.!?\\n]+(?:[;.!?]+|$)",
+    "paragraph": "(?:[^\\n]+\\n?)+",
+    "url": "https?://(?:[-\\w.]|(?:%[\\da-fA-F]{2}))+[/\\w.-]*\\??[/\\w.&=%-]*",
+    "phone": "\\b(?:\\+\\d{1,3}[-.\\s]?)?(?:[\\s(]*\\d{1,4}[\\s).-]*)?(?:\\d{1,8}[\\s.-]?){1,4}(?:\\s*(?:ext|x|#)\\s*\\d{1,6})?\\b",
+    "tel": "\\b(?:\\+\\d{1,3}[-.\\s]?)?(?:\\(\\d{1,4}\\)|\\d{1,4})?[\\s.-]?\\d{1,4}(?:[\\s.-]?\\d{1,4}){0,4}\\b(?:\\s*(?:ext|x|#)\\s*\\d{1,6})?",
+    "tel_international": "\\+\\d[\\d\\-\\s().]{5,}\\d",
+    "username": "@[A-Za-z0-9_]{1,15}\\b",
+    "hashtag": "#\\w+",
+    "mention": "@\\w+",
+    "slack_channel": "#\\w[\\w-]+",
+    "discord_tag": "\\w{2,32}#\\d{4}",
+    "ipv4": "\\b(?:25[0-5]|2[0-4]\\d|[01]?\\d\\d?)\\.(?:25[0-5]|2[0-4]\\d|[01]?\\d\\d?)\\.(?:25[0-5]|2[0-4]\\d|[01]?\\d\\d?)\\.(?:25[0-5]|2[0-4]\\d|[01]?\\d\\d?)\\b",
+    "ipv6": "\\b(?:[A-Fa-f0-9]{1,4}:){7}[A-Fa-f0-9]{1,4}\\b",
+    "mac": "\\b(?:[0-9A-Fa-f]{2}[:-]){5}[0-9A-Fa-f]{2}\\b",
+    "uuid": "\\b[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[1-5][0-9a-fA-F]{3}-[89abAB][0-9a-fA-F]{3}-[0-9a-fA-F]{12}\\b",
+    "md5": "\\b[a-fA-F0-9]{32}\\b",
+    "sha1": "\\b[a-fA-F0-9]{40}\\b",
+    "sha256": "\\b[a-fA-F0-9]{64}\\b",
+    "sha512": "\\b[a-fA-F0-9]{128}\\b",
+    "cve": "\\bCVE-\\d{4}-\\d{4,7}\\b",
+    "jwt": "eyJ[A-Za-z0-9_-]+\\.[A-Za-z0-9_-]+\\.[A-Za-z0-9_-]+",
+    "ssh_rsa_key": "ssh-rsa\\s+[A-Za-z0-9+/=]+",
+    "pgp_key_block": "-----BEGIN PGP PUBLIC KEY BLOCK-----(.*?)-----END PGP PUBLIC KEY BLOCK-----",
+    "date":"(?xi)(?:\\b\\d{4}[-./]?\\d{1,2}[-./]?\\d{1,2}\\b)|(?:\\b\\d{1,4}[-./]?\\d{1,2}[-./]?\\d{1,4}\\b)|(?:(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec|January|February|March|April|May|June|July|August|September|October|November|December)[a-z]*\\s+\\d{1,2},?\\s*\\d{2,4})|(?:(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec|January|February|March|April|May|June|July|August|September|October|November|December)[a-z]*[-\\\\s./]+\\d{1,2}[-\\\\s./]+\\d{2,4})|(?:\\d{1,2}\\s+(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec|January|February|March|April|May|June|July|August|September|October|November|December)[a-z]*\\s+\\d{2,4})|(?:\\d{2,4}\\s+(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec|January|February|March|April|May|June|July|August|September|October|November|December)[a-z]*\\s+\\d{1,2})|(?:\\d{4}[-./]?\\d{1,2}[-./]?\\d{1,2}[T\\s]\\d{1,2}:\\d{2}(?::\\d{2})?(?:[.,]\\d+)?\\s*(?:Z|[+-]\\d{2}:?\\d{2})?)|(?:\\b(?:today|tomorrow|yesterday|now|tonight|last\\s+night|this\\s+(?:morning|afternoon|evening)|next\\s+(?:week|month|year)|last\\s+(?:week|month|year))\\b)|(?:(?:Mon|Tue|Wed|Thu|Fri|Sat|Sun|Monday|Tuesday|Wednesday|Thursday|Friday|Saturday|Sunday)\\s*,?\\s*(?:\\d{1,2}\\s+)?(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec|January|February|March|April|May|June|July|August|September|October|November|December)[a-z]*\\s+\\d{2,4})|(?:\\d{1,2}[-/](?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)[a-z]*[-/]\\d{2,4})|(?:\\b(?:Q[1-4]|Quarter\\s+[1-4])\\s*\\d{2,4}\\b)|(?:(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec|January|February|March|April|May|June|July|August|September|October|November|December)[a-z]*\\s+\\d{2,4})|(?:\\d{2,4}\\s+(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec|January|February|March|April|May|June|July|August|September|October|November|December)[a-z]*)|(?:[一二三四五六七八九零〇十百千万]+年\\s*[一二三四五六七八九十]+月\\s*[一二三四五六七八九十]+日?)|(?:[0-9]{2,4}年\\s*[0-9]{1,2}月\\s*[0-9]{1,2}日?)|(?:\\d{1,2}\\.\\d{1,2}\\.\\d{2,4})|(?:\\d{1,2}/\\d{1,2}/\\d{2,4})|(?:\\d{6,8})|(?:\\b\\w{3},\\s+\\d{1,2}\\s+\\w{3}\\s+\\d{2,4}\\s+\\d{1,2}:\\d{2}(?::\\d{2})?\\s*(?:[+-]\\d{4}|UTC|GMT)\\b)|(?:\\b\\d{9,10}\\b)|(?:\\b\\d{5,6}\\b)",
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+    "date_iso": "\\b\\d{4}-\\d{2}-\\d{2}\\b",
+    "date_us": "\\b(0?[1-9]|1[0-2])/(0?[1-9]|[12][0-9]|3[01])/\\d{4}\\b",
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+    "time_24": "\\b([01]\\d|2[0-3]):[0-5]\\d(:[0-5]\\d)?(\\.\\d+)?\\b",
+    "time_12": "\\b(0?[1-9]|1[0-2]):[0-5]\\d\\s?[ap]m\\b",
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+    "month_abbr_year": "\\b(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)\\s+\\d{4}\\b",
+    "month_name": "\\b(?:January|February|March|April|May|June|July|August|September|October|November|December)\\b",
+    "month_abbr": "\\b(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)\\b",
+    "day_of_week": "\\b(?:Monday|Tuesday|Wednesday|Thursday|Friday|Saturday|Sunday)\\b",
+    "day_abbr": "\\b(?:Mon|Tue|Wed|Thu|Fri|Sat|Sun)\\b",
+    "full_date": "\\b(?:January|February|March|April|May|June|July|August|September|October|November|December)\\s+\\d{1,2},?\\s+\\d{4}\\b",
+    "full_date_abbr": "\\b(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)\\s+\\d{1,2},?\\s+\\d{4}\\b",
+    "epoch_time": "\\b\\d{10,13}\\b",
+    "rfc_2822": "\\b(?:Mon|Tue|Wed|Thu|Fri|Sat|Sun),\\s+\\d{1,2}\\s+(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)\\s+\\d{4}\\s+\\d{2}:\\d{2}:\\d{2}\\s+(?:[+-]\\d{4}|[A-Z]{3})\\b",
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+    "iso_week": "\\b\\d{4}-W(?:0[1-9]|[1-4][0-9]|5[0-3])\\b",
+    "quarter": "\\bQ[1-4]\\s*\\d{4}\\b",
+    "relative_date": "\\b(?:today|tomorrow|yesterday|now)\\b",
+    "time_with_zone": "\\b\\d{1,2}:\\d{2}(?::\\d{2})?\\s*(?:[APap][Mm])?\\s*(?:[A-Z]{3,4}|[+-]\\d{4})\\b",
+    "hour_minute": "\\b(?:[01]?\\d|2[0-3]):[0-5]\\d\\b",
+    "hour_only": "\\b(?:[01]?\\d|2[0-3])h?\\b",
+    "duration": "\\b(?:\\d+\\s*(?:days?|hrs?|hours?|mins?|minutes?|secs?|seconds?)\\b",
+    "iso_duration": "\\bP(?:\\d+Y)?(?:\\d+M)?(?:\\d+W)?(?:\\d+D)?(?:T(?:\\d+H)?(?:\\d+M)?(?:\\d+S)?)?\\b",
+    "week_number": "\\b(?:week\\s+)?[0-5]?\\d\\s*(?:of\\s+)?\\d{4}\\b",
+    "fiscal_quarter": "\\b(?:Q[1-4]\\s+FY\\s+)?\\d{4}\\b",
+    "fiscal_year": "\\bFY\\s*\\d{2,4}\\b",
+    "holiday": "\\b(?:Christmas|New Year's|Easter|Thanksgiving|Halloween|Valentine's|Independence)\\b",
+    "season": "\\b(?:spring|summer|autumn|fall|winter)\\b",
+    "date_range": "\\b\\d{4}-\\d{2}-\\d{2}\\s*(?:to|-)\\s*\\d{4}-\\d{2}-\\d{2}\\b",
+    "time_range": "\\b\\d{1,2}:\\d{2}\\s*(?:to|-)\\s*\\d{1,2}:\\d{2}\\b",
+    "bc_date": "\\b\\d+\\s*BC(?:E)?\\b",
+    "ad_date": "\\b\\d+\\s*AD\\b",
+    "int": "\\b[-+]?\\d+\\b",
+    "float": "\\b[-+]?\\d*\\.\\d+\\b",
+    "scientific": "\\b-?\\d+(\\.\\d+)?[eE][-+]?\\d+\\b",
+    "hex": "\\b0x[0-9a-fA-F]+\\b",
+    "binary": "\\b0b[01]+\\b",
+    "percentage": "(?<!\\w)(?:\\d{1,3}(?:[\\.,]\\d+)?\\s?(?:[-–~]\\s?\\d{1,3}(?:[\\.,]\\d+)?)?\\s?%)",
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+    "credit_card": "\\b(?:\\d[ -]*?){13,16}\\b",
+    "cc_visa": "\\b4[0-9]{12}(?:[0-9]{3})?\\b",
+    "cc_mastercard": "\\b5[1-5][0-9]{14}\\b",
+    "cc_amex": "\\b3[47][0-9]{13}\\b",
+    "cc_diners": "\\b3(?:0[0-5]|[68][0-9])[0-9]{11}\\b",
+    "cc_discover": "\\b6(?:011|5[0-9]{2})[0-9]{12}\\b",
+    "ssn": "\\b\\d{3}-\\d{2}-\\d{4}\\b",
+    "vin": "\\b[A-HJ-NPR-Z0-9]{17}\\b",
+    "latitude": "\\b-?\\d{1,2}(?:\\.\\d+)?\\b",
+    "longitude": "\\b-?\\d{1,3}(?:\\.\\d+)?\\b",
+    "coordinates": "\\b-?\\d{1,3}\\.\\d+,\\s*-?\\d{1,3}\\.\\d+\\b",
+    "zip_us": "\\b\\d{5}(?:-\\d{4})?\\b",
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+    "postcode_uk": "\\b[A-Z]{1,2}\\d[A-Z\\d]? ?\\d[A-Z]{2}\\b",
+    "postcode_ca": "\\b[A-Z]\\d[A-Z] \\d[A-Z]\\d\\b",
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+    "hex_color": "#(?:[0-9a-fA-F]{3}){1,2}\\b",
+    "rgb_color": "rgb\\((\\d{1,3}),\\s*(\\d{1,3}),\\s*(\\d{1,3})\\)",
+    "rgba_color": "rgba\\((\\d{1,3}),\\s*(\\d{1,3}),\\s*(\\d{1,3}),\\s*[01]?\\.?\\d+\\)",
+    "base64": "(?:[A-Za-z0-9+/]{4})*(?:[A-Za-z0-9+/]{2}==|[A-Za-z0-9+/]{3}=)?",
+    "json_key": "\"(?:\\\\.|[^\"\\\\])*\"\\s*:",
+    "xml_tag": "<(\\w+)(?:\\s+[^>]*)?>",
+    "html_tag": "<\\/?\\w+(?:\\s+[^>]*)?>",
+    "guid": "\\b[A-Fa-f0-9]{8}-(?:[A-Fa-f0-9]{4}-){3}[A-Fa-f0-9]{12}\\b",
+    "python_var": "\\b[a-zA-Z_]\\w*\\b",
+    "java_class": "\\b[A-Z][a-zA-Z0-9_$]*\\b",
+    "ipython_magic": "^%[a-z]+",
+    "filepath_win": "[a-zA-Z]:(?:\\\\[^\\\\/:*?\"<>|\\r\\n]+)*\\\\?[^\\\\/:*?\"<>|\\r\\n]*",
+    "filepath_unix": "/(?:[^/\\0]+/)*[^/\\0]*",
+    "filename": "[^\\\\/:*?\"<>|\\r\\n]+(?:\\.[A-Za-z0-9]+)?",
+    "file_ext": "\\.\\w{2,6}\\b",
+    "image_file": "\\.(jpe?g|png|gif|bmp|webp|svg)\\b",
+    "doc_file": "\\.(docx?|xlsx?|pptx?|pdf|odt|ods|odp)\\b",
+    "audio_file": "\\.(mp3|wav|flac|aac|ogg|wma)\\b",
+    "video_file": "\\.(mp4|avi|mov|wmv|mkv|flv|webm)\\b",
+    "code_file": "\\.(py|js|java|cpp|c|html?|css|php|rb|go|swift|ts|rs)\\b",
+    "archive_file": "\\.(zip|tar|gz|tgz|bz2|rar|7z)\\b",
+    "isbn": "\\b(?:\\d{9}[\\dX]|\\d{13})\\b",
+    "issn": "\\b\\d{4}-\\d{3}[\\dX]\\b",
+    "chemical_formula": "\\b(?:[A-Z][a-z]?\\d*)+\\b",
+    "dna_seq": "\\b[ACGT]{6,}\\b",
+    "rna_seq": "\\b[ACGU]{6,}\\b",
+    "cas_number": "\\b\\d{2,7}-\\d{2}-\\d\\b",
+    "un_number": "\\bUN\\d{4}\\b",
+    "stock_ticker": "\\b[A-Z]{2,5}\\b",
+    "swift": "\\b[A-Z]{6}[A-Z0-9]{2}(?:[A-Z0-9]{3})?\\b",
+    "bic": "\\b[A-Z]{6}[A-Z0-9]{2}(?:[A-Z0-9]{3})?\\b",
+    "iban": "\\b[A-Z]{2}\\d{2}\\s?(?:\\w{4}\\s?){2,7}\\w{1,4}\\b",
+    "semver": "\\b(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-[\\w.-]+)?(?:\\+[\\w.-]+)?\\b",
+    "docker_image": "\\b[\\w.-]+/[\\w.-]+:\\w+\\b",
+    "aws_arn": "\\barn:aws:[a-z0-9\\-]+:[a-z0-9\\-]*:\\d{12}:[\\w\\-/]+\\b",
+    "html_entity": "&(?:[a-z]+|#\\d+|#x[0-9a-f]+);",
+    "reddit_sub": "\\b/r/[\\w]+\\b",
+    "reddit_user": "\\b/u/[\\w]+\\b",
+    "youtube_id": "\\b[A-Za-z0-9_-]{11}\\b",
+    "http_status": "\\b[1-5]\\d{2}\\b",
+    "http_method": "\\b(?:GET|POST|PUT|DELETE|HEAD|OPTIONS|PATCH|CONNECT|TRACE)\\b",
+    "mime_type": "\\b[a-z]+/[a-z0-9.+-]+\\b",
+    "css_class": "\\.[A-Za-z_][\\w-]*\\b",
+    "css_id": "#[A-Za-z_][\\w-]*\\b",
+    "html_comment": "<!--.*?-->",
+    "icd10": "\\b[A-Z]\\d{2}(?:\\.\\d{1,2})?\\b",
+    "npi": "\\b\\d{10}\\b",
+    "passport_us": "\\b\\d{9}\\b",
+    "passport_uk": "\\b[A-Za-z0-9]{9}\\b",
+    "blood_type": "\\b(?:A|B|AB|O)[+-]\\b",
+    "log_level": "\\b(?:TRACE|DEBUG|INFO|WARN|ERROR|FATAL)\\b",
+    "markdown_heading": "^#{1,6}\\s+.*",
+    "markdown_link": "\\[[^\\]]+\\]\\([^)]+\\)",
+    "markdown_image": "!\\[[^\\]]+\\]\\([^)]+\\)",
+    "github_repo": "[a-z0-9_.-]+/[a-z0-9_.-]+",
+    "twitter_url": "https://twitter\\.com/[A-Za-z0-9_]{1,15}/status/\\d+",
+    "spotify_id": "\\b(?:spotify:[a-z]+:[a-zA-Z0-9]{22})\\b",
+    "yt_url": "https://(?:www\\.)?youtube\\.com/watch\\?v=[A-Za-z0-9_-]{11}",
+    "semantic_version": "\\b(0|[1-9]\\d*)\\.(0|[1-9]\\d*)\\.(0|[1-9]\\d*)(?:-((?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\\.(?:0|[1-9]\\d*|\\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\\+([0-9a-zA-Z-]+(?:\\.[0-9a-zA-Z-]+)*))?\\b",
+    "windows_version": "\\b(?:Windows(?:\\s+NT)?\\s+)?(?:XP|Vista|7|8|8\\.1|10|11)\\b",
+    "macos_version": "\\b(?:macOS|OS\\s+X)\\s+(?:10\\.\\d+|11|12|13|14)\\b",
+    "linux_distro": "\\b(?:Ubuntu|Debian|Fedora|CentOS|Arch|Mint|Kali|SUSE)\\b",
+    "http_header": "^[A-Za-z0-9-]+:\\s+.+",
+    "log_timestamp": "\\b\\d{4}-\\d{2}-\\d{2}[T ]\\d{2}:\\d{2}:\\d{2}\\.\\d{3,6}[+-]\\d{4}\\b",
+    "json_web_token": "\\beyJ[A-Za-z0-9_-]*\\.[A-Za-z0-9_-]*\\.[A-Za-z0-9_-]*\\b",
+    "units": "(?i)(?<![A-Za-z0-9])(\\d+\\s?(?:mg/ml|g/ml|µg/ml|ng/ml|u/ml|iu/ml|µmol/l|mmol/l|g/l|mg/dl|g/dl|cells/ml|particles/ml|cfu/ml|iu/l|mosm/kg|kpa/m|n/m|j/k|w/m²|w/(m·k)|l/min|ml/min|µl/min|nl/min|g/cm³|kg/m³|mol/m³)|s|sec(?:onds?)?|min(?:utes?)?|h(?:ours?|r|rs)?|d(?:ays?)?|wk(?:s|eeks?)?|mo(?:nths?)?|y(?:ears?|r|rs)|m(?:eters?|etres?)?|cm|centi(?:meters?|metres?)|mm|milli(?:meters?|metres?)|(?:µ|u)m|micro(?:meters?|metres?)|nm|nano(?:meters?|metres?)|km|kilo(?:meters?|metres?)|in(?:ches?)?|ft|foot|feet|yd(?:ards?)?|mi(?:les?)?|g(?:rams?)?|mg|milli(?:grams?)?|(?:µ|u)g|micro(?:grams?)?|kg|kilo(?:grams?)?|t(?:on(?:nes?)?)?|l|l(?:iters?|itres?)?|ml|milli(?:liters?|litres?)|(?:µ|u)l|ul|micro(?:liters?|litres?)|nl|nano(?:liters?|litres?)|fl(?:uid)?(?:\\s+oz|ounce)|°[cf]|(?:degrees?\\s+)?(?:celsius|fahrenheit)|k|kelvin(?:s)?|j(?:oules?)?|kj|kilo(?:joules?)?|cal(?:ories?)?|kcal|kilo(?:calories?)?|ev|electron(?:\\s+)?volts?|w(?:atts?)?|kw|kilo(?:watts?)?|mw|mega(?:watts?)?|hp|horse(?:\\s+)?power|pa(?:scals?)?|kpa|kilo(?:pascals?)?|mpa|mega(?:pascals?)?|bar(?:s)?|atm(?:ospheres?)?|mmhg|torr|psi|pounds?\\s+per\\s+square\\s+inch|a(?:mps?|mperes?)?|ma|milli(?:amps?)?|v(?:olts?)?|kv|kilo(?:volts?)?|ω|ohms?|s(?:iemens)?|f(?:arads?)?|h(?:enrys?)?|c(?:oulombs?)?|wb(?:eber(?:s)?)?|t(?:esla(?:s)?)?|hz|hertz|khz|kilohertz|mhz|megahertz|ghz|gigahertz|thz|terahertz|m(?:olar)?|mol(?:ar)?/l|mmol(?:ar)?/l|(?:µ|u)m|micromolar|nm|nanomolar|pm|picomolar|%(?:\\s*w/v|\\s*v/v)?|ppm|ppb|ppt|u(?:nits?)?/ml|iu(?:\\s+)?/ml|cfu(?:/ml)?|od(?:\\d+)?|optical\\s+density|bp|base\\s*pairs?|kb|kilo(?:base\\s*pairs?)?|mb|mega(?:base\\s*pairs?)?|gb|giga(?:base\\s*pairs?)?|rpm|g(?:\\s+)?force|mol(?:es?)?|mmol|milli(?:moles?)?|(?:µ|u)mol|micro(?:moles?)?|nmol|nano(?:moles?)?|da(?:ltons?)?|kda|kilo(?:daltons?)?|g/mol|kd|kilo(?:daltons?)?|gy|grays?|sv(?:ieverts?)?|bq|becquerels?|ci|curie(?:s)?|rad(?:s)?|rem(?:s)?|/s|/min|/h|/d|/wk|/mo|/yr|/ml|/l|/g|/kg|/cell|/well|/sample|%|percent|°|degrees?|rad(?:ians?)?|sr|steradians?|lm|lumens?|lx|lux|cd|candelas?|b(?:ytes?)?|bit(?:s)?|pixel(?:s)?|dpi|ppi|n(?:ewtons?)?|lm/w|lumens?\\s+per\\s+watt)(?=\\b|[^A-Za-z0-9])",
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+}

py2ls/data/sns_info.json

@@ -0,0 +1,74 @@
+{
+    "Functions": [
+        "relplot",
+        "scatterplot",
+        "lineplot",
+        "lmplot",
+        "catplot",
+        "stripplot",
+        "boxplot",
+        "violinplot",
+        "boxenplot",
+        "pointplot",
+        "barplot",
+        "countplot",
+        "displot",
+        "histplot",
+        "kdeplot",
+        "ecdfplot",
+        "rugplot",
+        "regplot",
+        "residplot",
+        "pairplot",
+        "jointplot",
+        "plotting_context"
+    ],
+    "Category": [
+        "relational",
+        "relational",
+        "relational",
+        "relational",
+        "categorical",
+        "categorical",
+        "categorical",
+        "categorical",
+        "categorical",
+        "categorical",
+        "categorical",
+        "categorical",
+        "distribution",
+        "distribution",
+        "distribution",
+        "distribution",
+        "distribution",
+        "regression",
+        "regression",
+        "grid-based(fig)",
+        "grid-based(fig)",
+        "context"
+    ],
+    "Detail": [
+        "A figure-level function for creating scatter plots and line plots. It combines the functionality of scatterplot and lineplot.",
+        "A function for creating scatter plots, useful for visualizing the relationship between two continuous variables.",
+        "A function for drawing line plots, often used to visualize trends over time or ordered categories.",
+        "A figure-level function for creating linear model plots, combining regression lines with scatter plots.",
+        "A figure-level function for creating categorical plots, which can display various types of plots like box plots, violin plots, and bar plots in one function.",
+        "A function for creating a scatter plot where one of the variables is categorical, helping visualize distribution along a categorical axis.",
+        "A function for creating box plots, which summarize the distribution of a continuous variable based on a categorical variable.",
+        "A function for creating violin plots, which combine box plots and KDEs to visualize the distribution of data.",
+        "A function for creating boxen plots, an enhanced version of box plots that better represent data distributions with more quantiles.",
+        "A function for creating point plots, which show the mean (or another estimator) of a variable for each level of a categorical variable.",
+        "A function for creating bar plots, which represent the mean (or other estimators) of a variable with bars, typically used with categorical data.",
+        "A function for creating count plots, which show the counts of observations in each categorical bin.",
+        "A figure-level function that creates distribution plots. It can visualize histograms, KDEs, and ECDFs, making it versatile for analyzing the distribution of data.",
+        "A function for creating histograms, useful for showing the frequency distribution of a continuous variable.",
+        "A function for creating kernel density estimate (KDE) plots, which visualize the probability density function of a continuous variable.",
+        "A function for creating empirical cumulative distribution function (ECDF) plots, which show the proportion of observations below a certain value.",
+        "A function that adds a rug plot to the axes, representing individual data points along an axis.",
+        "A function for creating regression plots, which fit and visualize a regression model on scatter data.",
+        "A function for creating residual plots, useful for diagnosing the fit of a regression model.",
+        "A figure-level function that creates a grid of scatter plots for each pair of variables in a dataset, often used for exploratory data analysis.",
+        "A figure-level function that combines scatter plots and histograms (or KDEs) to visualize the relationship between two variables and their distributions.",
+        "Not a plot itself, but a function that allows you to change the context (style and scaling) of your plots to fit different publication requirements or visual preferences."
+    ]
+}

py2ls/data/styles/stylelib/grid.mplstyle

@@ -0,0 +1,15 @@
+# Add grid lines and turn the legend frame on
+
+# Grid lines
+axes.grid : True
+axes.axisbelow : True
+grid.linestyle : --
+grid.color : k
+grid.alpha : 0.5
+grid.linewidth : 0.5
+
+# Legend
+legend.frameon : True
+legend.framealpha : 1.0
+legend.fancybox : True
+legend.numpoints : 1

py2ls/data/styles/stylelib/high-contrast.mplstyle

@@ -0,0 +1,6 @@
+# High-contrast color scheme
+# color-blind safe
+# from Paul Tot's website: https://personal.sron.nl/~pault/
+
+# Set color cycle
+axes.prop_cycle : cycler('color', ['004488', 'DDAA33', 'BB5566'])

py2ls/data/styles/stylelib/high-vis.mplstyle

@@ -0,0 +1,4 @@
+# Matplotlib style for high visability plots (i.e., bright colors!!!)
+
+# Set color cycle
+axes.prop_cycle : (cycler('color', ["0d49fb", "e6091c", "26eb47", "8936df", "fec32d", "25d7fd"]) + cycler('ls', ['-', '--', '-.', ':', '-', '--']))

py2ls/data/styles/stylelib/ieee.mplstyle

@@ -0,0 +1,15 @@
+# Matplotlib style for IEEE plots
+# This style should work for most two-column journals
+
+# Set color cycle
+# Set line style as well for black and white graphs
+axes.prop_cycle : (cycler('color', ['k', 'r', 'b', 'g']) + cycler('ls', ['-', '--', ':', '-.']))
+
+# Set default figure size
+figure.figsize : 3.3, 2.5
+figure.dpi : 600
+
+# Font sizes
+font.size : 8
+font.family : serif
+font.serif : Times