py-neuromodulation 0.0.4__py3-none-any.whl → 0.0.6__py3-none-any.whl

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Files changed (109) hide show
  1. py_neuromodulation/ConnectivityDecoding/_get_grid_hull.m +34 -34
  2. py_neuromodulation/ConnectivityDecoding/_get_grid_whole_brain.py +95 -106
  3. py_neuromodulation/ConnectivityDecoding/_helper_write_connectome.py +107 -119
  4. py_neuromodulation/__init__.py +80 -13
  5. py_neuromodulation/{nm_RMAP.py → analysis/RMAP.py} +496 -531
  6. py_neuromodulation/analysis/__init__.py +4 -0
  7. py_neuromodulation/{nm_decode.py → analysis/decode.py} +918 -992
  8. py_neuromodulation/{nm_analysis.py → analysis/feature_reader.py} +994 -1074
  9. py_neuromodulation/{nm_plots.py → analysis/plots.py} +627 -612
  10. py_neuromodulation/{nm_stats.py → analysis/stats.py} +458 -480
  11. py_neuromodulation/data/README +6 -6
  12. py_neuromodulation/data/dataset_description.json +8 -8
  13. py_neuromodulation/data/participants.json +32 -32
  14. py_neuromodulation/data/participants.tsv +2 -2
  15. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_space-mni_coordsystem.json +5 -5
  16. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_space-mni_electrodes.tsv +11 -11
  17. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_channels.tsv +11 -11
  18. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.json +18 -18
  19. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.vhdr +35 -35
  20. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/ieeg/sub-testsub_ses-EphysMedOff_task-gripforce_run-0_ieeg.vmrk +13 -13
  21. py_neuromodulation/data/sub-testsub/ses-EphysMedOff/sub-testsub_ses-EphysMedOff_scans.tsv +2 -2
  22. py_neuromodulation/default_settings.yaml +241 -0
  23. py_neuromodulation/features/__init__.py +31 -0
  24. py_neuromodulation/features/bandpower.py +165 -0
  25. py_neuromodulation/features/bispectra.py +157 -0
  26. py_neuromodulation/features/bursts.py +297 -0
  27. py_neuromodulation/features/coherence.py +255 -0
  28. py_neuromodulation/features/feature_processor.py +121 -0
  29. py_neuromodulation/features/fooof.py +142 -0
  30. py_neuromodulation/features/hjorth_raw.py +57 -0
  31. py_neuromodulation/features/linelength.py +21 -0
  32. py_neuromodulation/features/mne_connectivity.py +148 -0
  33. py_neuromodulation/features/nolds.py +94 -0
  34. py_neuromodulation/features/oscillatory.py +249 -0
  35. py_neuromodulation/features/sharpwaves.py +432 -0
  36. py_neuromodulation/filter/__init__.py +3 -0
  37. py_neuromodulation/filter/kalman_filter.py +67 -0
  38. py_neuromodulation/filter/kalman_filter_external.py +1890 -0
  39. py_neuromodulation/filter/mne_filter.py +128 -0
  40. py_neuromodulation/filter/notch_filter.py +93 -0
  41. py_neuromodulation/grid_cortex.tsv +40 -40
  42. py_neuromodulation/liblsl/libpugixml.so.1.12 +0 -0
  43. py_neuromodulation/liblsl/linux/bionic_amd64/liblsl.1.16.2.so +0 -0
  44. py_neuromodulation/liblsl/linux/bookworm_amd64/liblsl.1.16.2.so +0 -0
  45. py_neuromodulation/liblsl/linux/focal_amd46/liblsl.1.16.2.so +0 -0
  46. py_neuromodulation/liblsl/linux/jammy_amd64/liblsl.1.16.2.so +0 -0
  47. py_neuromodulation/liblsl/linux/jammy_x86/liblsl.1.16.2.so +0 -0
  48. py_neuromodulation/liblsl/linux/noble_amd64/liblsl.1.16.2.so +0 -0
  49. py_neuromodulation/liblsl/macos/amd64/liblsl.1.16.2.dylib +0 -0
  50. py_neuromodulation/liblsl/macos/arm64/liblsl.1.16.0.dylib +0 -0
  51. py_neuromodulation/liblsl/windows/amd64/liblsl.1.16.2.dll +0 -0
  52. py_neuromodulation/liblsl/windows/x86/liblsl.1.16.2.dll +0 -0
  53. py_neuromodulation/processing/__init__.py +10 -0
  54. py_neuromodulation/{nm_artifacts.py → processing/artifacts.py} +29 -25
  55. py_neuromodulation/processing/data_preprocessor.py +77 -0
  56. py_neuromodulation/processing/filter_preprocessing.py +78 -0
  57. py_neuromodulation/processing/normalization.py +175 -0
  58. py_neuromodulation/{nm_projection.py → processing/projection.py} +370 -394
  59. py_neuromodulation/{nm_rereference.py → processing/rereference.py} +97 -95
  60. py_neuromodulation/{nm_resample.py → processing/resample.py} +56 -50
  61. py_neuromodulation/stream/__init__.py +3 -0
  62. py_neuromodulation/stream/data_processor.py +325 -0
  63. py_neuromodulation/stream/generator.py +53 -0
  64. py_neuromodulation/stream/mnelsl_player.py +94 -0
  65. py_neuromodulation/stream/mnelsl_stream.py +120 -0
  66. py_neuromodulation/stream/settings.py +292 -0
  67. py_neuromodulation/stream/stream.py +427 -0
  68. py_neuromodulation/utils/__init__.py +2 -0
  69. py_neuromodulation/{nm_define_nmchannels.py → utils/channels.py} +305 -302
  70. py_neuromodulation/utils/database.py +149 -0
  71. py_neuromodulation/utils/io.py +378 -0
  72. py_neuromodulation/utils/keyboard.py +52 -0
  73. py_neuromodulation/utils/logging.py +66 -0
  74. py_neuromodulation/utils/types.py +251 -0
  75. {py_neuromodulation-0.0.4.dist-info → py_neuromodulation-0.0.6.dist-info}/METADATA +28 -33
  76. py_neuromodulation-0.0.6.dist-info/RECORD +89 -0
  77. {py_neuromodulation-0.0.4.dist-info → py_neuromodulation-0.0.6.dist-info}/WHEEL +1 -1
  78. {py_neuromodulation-0.0.4.dist-info → py_neuromodulation-0.0.6.dist-info}/licenses/LICENSE +21 -21
  79. py_neuromodulation/FieldTrip.py +0 -589
  80. py_neuromodulation/_write_example_dataset_helper.py +0 -65
  81. py_neuromodulation/nm_EpochStream.py +0 -92
  82. py_neuromodulation/nm_IO.py +0 -417
  83. py_neuromodulation/nm_across_patient_decoding.py +0 -927
  84. py_neuromodulation/nm_bispectra.py +0 -168
  85. py_neuromodulation/nm_bursts.py +0 -198
  86. py_neuromodulation/nm_coherence.py +0 -205
  87. py_neuromodulation/nm_cohortwrapper.py +0 -435
  88. py_neuromodulation/nm_eval_timing.py +0 -239
  89. py_neuromodulation/nm_features.py +0 -116
  90. py_neuromodulation/nm_features_abc.py +0 -39
  91. py_neuromodulation/nm_filter.py +0 -219
  92. py_neuromodulation/nm_filter_preprocessing.py +0 -91
  93. py_neuromodulation/nm_fooof.py +0 -159
  94. py_neuromodulation/nm_generator.py +0 -37
  95. py_neuromodulation/nm_hjorth_raw.py +0 -73
  96. py_neuromodulation/nm_kalmanfilter.py +0 -58
  97. py_neuromodulation/nm_linelength.py +0 -33
  98. py_neuromodulation/nm_mne_connectivity.py +0 -112
  99. py_neuromodulation/nm_nolds.py +0 -93
  100. py_neuromodulation/nm_normalization.py +0 -214
  101. py_neuromodulation/nm_oscillatory.py +0 -448
  102. py_neuromodulation/nm_run_analysis.py +0 -435
  103. py_neuromodulation/nm_settings.json +0 -338
  104. py_neuromodulation/nm_settings.py +0 -68
  105. py_neuromodulation/nm_sharpwaves.py +0 -401
  106. py_neuromodulation/nm_stream_abc.py +0 -218
  107. py_neuromodulation/nm_stream_offline.py +0 -359
  108. py_neuromodulation/utils/_logging.py +0 -24
  109. py_neuromodulation-0.0.4.dist-info/RECORD +0 -72
py_neuromodulation/analysis/__init__.py ADDED
@@ -0,0 +1,4 @@
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+ from .plots import *
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+ from .stats import *
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+ from .decode import Decoder
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+ from .feature_reader import FeatureReader