plotnine 0.15.0a2__py3-none-any.whl → 0.15.0a4__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- plotnine/_mpl/layout_manager/_layout_tree.py +16 -6
- plotnine/_utils/__init__.py +7 -103
- plotnine/doctools.py +3 -3
- plotnine/geoms/annotate.py +10 -10
- plotnine/geoms/annotation_logticks.py +5 -8
- plotnine/geoms/annotation_stripes.py +4 -6
- plotnine/geoms/geom.py +41 -20
- plotnine/geoms/geom_abline.py +3 -2
- plotnine/geoms/geom_blank.py +0 -3
- plotnine/geoms/geom_boxplot.py +4 -4
- plotnine/geoms/geom_crossbar.py +3 -3
- plotnine/geoms/geom_dotplot.py +1 -1
- plotnine/geoms/geom_errorbar.py +2 -2
- plotnine/geoms/geom_errorbarh.py +2 -2
- plotnine/geoms/geom_hline.py +3 -2
- plotnine/geoms/geom_linerange.py +2 -2
- plotnine/geoms/geom_map.py +3 -3
- plotnine/geoms/geom_path.py +10 -11
- plotnine/geoms/geom_point.py +4 -5
- plotnine/geoms/geom_pointrange.py +3 -5
- plotnine/geoms/geom_polygon.py +2 -3
- plotnine/geoms/geom_raster.py +4 -5
- plotnine/geoms/geom_rect.py +3 -4
- plotnine/geoms/geom_ribbon.py +7 -7
- plotnine/geoms/geom_rug.py +1 -1
- plotnine/geoms/geom_segment.py +2 -2
- plotnine/geoms/geom_smooth.py +3 -3
- plotnine/geoms/geom_step.py +2 -2
- plotnine/geoms/geom_text.py +2 -3
- plotnine/geoms/geom_violin.py +4 -5
- plotnine/geoms/geom_vline.py +3 -2
- plotnine/guides/guides.py +1 -1
- plotnine/layer.py +20 -12
- plotnine/mapping/_eval_environment.py +1 -1
- plotnine/mapping/aes.py +75 -45
- plotnine/scales/scale_color.py +46 -14
- plotnine/scales/scale_continuous.py +4 -3
- plotnine/scales/scale_datetime.py +28 -14
- plotnine/scales/scale_discrete.py +1 -1
- plotnine/scales/scale_xy.py +2 -2
- plotnine/stats/smoothers.py +19 -19
- plotnine/stats/stat.py +15 -25
- plotnine/stats/stat_bin.py +2 -5
- plotnine/stats/stat_bin_2d.py +7 -9
- plotnine/stats/stat_bindot.py +5 -8
- plotnine/stats/stat_boxplot.py +5 -5
- plotnine/stats/stat_count.py +5 -9
- plotnine/stats/stat_density.py +5 -8
- plotnine/stats/stat_density_2d.py +11 -8
- plotnine/stats/stat_ecdf.py +6 -5
- plotnine/stats/stat_ellipse.py +5 -6
- plotnine/stats/stat_function.py +6 -8
- plotnine/stats/stat_hull.py +2 -3
- plotnine/stats/stat_identity.py +1 -2
- plotnine/stats/stat_pointdensity.py +4 -7
- plotnine/stats/stat_qq.py +45 -20
- plotnine/stats/stat_qq_line.py +15 -11
- plotnine/stats/stat_quantile.py +6 -7
- plotnine/stats/stat_sina.py +12 -14
- plotnine/stats/stat_smooth.py +7 -10
- plotnine/stats/stat_sum.py +1 -2
- plotnine/stats/stat_summary.py +6 -9
- plotnine/stats/stat_summary_bin.py +10 -13
- plotnine/stats/stat_unique.py +1 -2
- plotnine/stats/stat_ydensity.py +7 -10
- {plotnine-0.15.0a2.dist-info → plotnine-0.15.0a4.dist-info}/METADATA +4 -4
- {plotnine-0.15.0a2.dist-info → plotnine-0.15.0a4.dist-info}/RECORD +70 -70
- {plotnine-0.15.0a2.dist-info → plotnine-0.15.0a4.dist-info}/WHEEL +1 -1
- {plotnine-0.15.0a2.dist-info → plotnine-0.15.0a4.dist-info}/licenses/LICENSE +0 -0
- {plotnine-0.15.0a2.dist-info → plotnine-0.15.0a4.dist-info}/top_level.txt +0 -0
plotnine/geoms/geom_path.py
CHANGED
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@@ -107,7 +107,6 @@ class geom_path(geom):
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panel_params: panel_view,
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coord: coord,
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ax: Axes,
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**params: Any,
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):
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if not any(data["group"].duplicated()):
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warn(
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@@ -138,14 +137,14 @@ class geom_path(geom):
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ngroup = len(np.unique(data["group"].to_numpy()))
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constant = num_unique_rows == ngroup
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params["constant"] = constant
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self.params["constant"] = constant
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if not constant:
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self.draw_group(data, panel_params, coord, ax,
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self.draw_group(data, panel_params, coord, ax, self.params)
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else:
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for _, gdata in data.groupby("group"):
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gdata.reset_index(inplace=True, drop=True)
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self.draw_group(gdata, panel_params, coord, ax,
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self.draw_group(gdata, panel_params, coord, ax, self.params)
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@staticmethod
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def draw_group(
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panel_params: panel_view,
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coord: coord,
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ax: Axes,
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params: dict[str, Any],
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):
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data = coord.transform(data, panel_params, munch=True)
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data["linewidth"] = data["size"] * SIZE_FACTOR
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constant = len(np.unique(data["group"].to_numpy())) == 1
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if not constant:
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_draw_segments(data, ax,
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_draw_segments(data, ax, params)
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else:
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_draw_lines(data, ax,
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_draw_lines(data, ax, params)
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if "arrow" in params and params["arrow"]:
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params["arrow"].draw(
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data, panel_params, coord, ax, constant=constant
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data, panel_params, coord, ax, params, constant=constant
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)
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@staticmethod
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panel_params: panel_view,
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coord: coord,
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ax: Axes,
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params: dict[str, Any],
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constant: bool = True,
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**params: Any,
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):
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"""
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Draw arrows at the end(s) of the lines
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return paths
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def _draw_segments(data: pd.DataFrame, ax: Axes,
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def _draw_segments(data: pd.DataFrame, ax: Axes, params: dict[str, Any]):
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"""
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Draw independent line segments between all the
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points
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ax.add_collection(coll)
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def _draw_lines(data: pd.DataFrame, ax: Axes,
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def _draw_lines(data: pd.DataFrame, ax: Axes, params: dict[str, Any]):
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"""
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Draw a path with the same characteristics from the
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first point to the last point
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plotnine/geoms/geom_point.py
CHANGED
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panel_params: panel_view,
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coord: coord,
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ax: Axes,
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):
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"""
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Plot all groups
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"""
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self.draw_group(data, panel_params, coord, ax,
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self.draw_group(data, panel_params, coord, ax, self.params)
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@staticmethod
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def draw_group(
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panel_params: panel_view,
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coord: coord,
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ax: Axes,
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params: dict[str, Any],
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data = coord.transform(data, panel_params)
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units = "shape"
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for _, udata in data.groupby(units, dropna=False):
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udata.reset_index(inplace=True, drop=True)
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geom_point.draw_unit(udata, panel_params, coord, ax,
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geom_point.draw_unit(udata, panel_params, coord, ax, params)
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@staticmethod
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def draw_unit(
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coord: coord,
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ax: Axes,
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# Our size is in 'points' while scatter wants
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# 'points^2'. The stroke is outside. And pi
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geom_linerange.draw_group(
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geom_linerange.draw_group(data.copy(), panel_params, coord, ax, params)
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data["stroke"] = geom_point.DEFAULT_AES["stroke"]
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geom_point.draw_group(data, panel_params, coord, ax, params)
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@staticmethod
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def draw_legend(
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plotnine/geoms/geom_polygon.py
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"""
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"""
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from matplotlib.collections import PolyCollection
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plotnine/geoms/geom_raster.py
CHANGED
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"""
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data=X,
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interpolation=self.params["interpolation"],
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origin="upper",
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rasterized=self.params["raster"],
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plotnine/geoms/geom_rect.py
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geom_polygon.draw_group(
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@staticmethod
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plotnine/geoms/geom_ribbon.py
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if outline_type in ("upper", "both"):
|
|
@@ -194,5 +194,5 @@ class geom_ribbon(geom):
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panel_params,
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195
195
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coord,
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ax,
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-
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+
params,
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198
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)
|
plotnine/geoms/geom_rug.py
CHANGED
plotnine/geoms/geom_segment.py
CHANGED
|
@@ -64,7 +64,7 @@ class geom_segment(geom):
|
|
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64
64
|
panel_params: panel_view,
|
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65
65
|
coord: coord,
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66
66
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ax: Axes,
|
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67
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-
|
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67
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+
params: dict[str, Any],
|
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68
68
|
):
|
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69
69
|
from matplotlib.collections import LineCollection
|
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70
70
|
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|
@@ -100,5 +100,5 @@ class geom_segment(geom):
|
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100
100
|
adata[param] = np.hstack([data[param], data[param]])
|
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101
101
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102
102
|
params["arrow"].draw(
|
|
103
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-
adata, panel_params, coord, ax, constant=False
|
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103
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+
adata, panel_params, coord, ax, params, constant=False
|
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104
104
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)
|
plotnine/geoms/geom_smooth.py
CHANGED
|
@@ -78,7 +78,7 @@ class geom_smooth(geom):
|
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78
78
|
panel_params: panel_view,
|
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79
79
|
coord: coord,
|
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80
80
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ax: Axes,
|
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81
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-
|
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81
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+
params: dict[str, Any],
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82
82
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):
|
|
83
83
|
has_ribbon = "ymin" in data and "ymax" in data
|
|
84
84
|
if has_ribbon:
|
|
@@ -86,10 +86,10 @@ class geom_smooth(geom):
|
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86
86
|
data2["color"] = "none"
|
|
87
87
|
params2 = params.copy()
|
|
88
88
|
params2["outline_type"] = "full"
|
|
89
|
-
geom_ribbon.draw_group(data2, panel_params, coord, ax,
|
|
89
|
+
geom_ribbon.draw_group(data2, panel_params, coord, ax, params2)
|
|
90
90
|
|
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91
91
|
data["alpha"] = 1
|
|
92
|
-
geom_line.draw_group(data, panel_params, coord, ax,
|
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92
|
+
geom_line.draw_group(data, panel_params, coord, ax, params)
|
|
93
93
|
|
|
94
94
|
@staticmethod
|
|
95
95
|
def draw_legend(
|
plotnine/geoms/geom_step.py
CHANGED
|
@@ -54,7 +54,7 @@ class geom_step(geom_path):
|
|
|
54
54
|
panel_params: panel_view,
|
|
55
55
|
coord: coord,
|
|
56
56
|
ax: Axes,
|
|
57
|
-
|
|
57
|
+
params: dict[str, Any],
|
|
58
58
|
):
|
|
59
59
|
direction = params["direction"]
|
|
60
60
|
n = len(data)
|
|
@@ -84,4 +84,4 @@ class geom_step(geom_path):
|
|
|
84
84
|
|
|
85
85
|
path_data = pd.DataFrame({"x": new_x, "y": new_y})
|
|
86
86
|
copy_missing_columns(path_data, data)
|
|
87
|
-
geom_path.draw_group(path_data, panel_params, coord, ax,
|
|
87
|
+
geom_path.draw_group(path_data, panel_params, coord, ax, params)
|
plotnine/geoms/geom_text.py
CHANGED
|
@@ -214,9 +214,8 @@ class geom_text(geom):
|
|
|
214
214
|
panel_params: panel_view,
|
|
215
215
|
coord: coord,
|
|
216
216
|
ax: Axes,
|
|
217
|
-
**params: Any,
|
|
218
217
|
):
|
|
219
|
-
super().draw_panel(data, panel_params, coord, ax
|
|
218
|
+
super().draw_panel(data, panel_params, coord, ax)
|
|
220
219
|
|
|
221
220
|
@staticmethod
|
|
222
221
|
def draw_group(
|
|
@@ -224,7 +223,7 @@ class geom_text(geom):
|
|
|
224
223
|
panel_params: panel_view,
|
|
225
224
|
coord: coord,
|
|
226
225
|
ax: Axes,
|
|
227
|
-
|
|
226
|
+
params: dict[str, Any],
|
|
228
227
|
):
|
|
229
228
|
data = coord.transform(data, panel_params)
|
|
230
229
|
zorder = params["zorder"]
|
plotnine/geoms/geom_violin.py
CHANGED
|
@@ -113,8 +113,8 @@ class geom_violin(geom):
|
|
|
113
113
|
panel_params: panel_view,
|
|
114
114
|
coord: coord,
|
|
115
115
|
ax: Axes,
|
|
116
|
-
**params: Any,
|
|
117
116
|
):
|
|
117
|
+
params = self.params.copy()
|
|
118
118
|
quantiles = params.pop("draw_quantiles")
|
|
119
119
|
style = params.pop("style")
|
|
120
120
|
zorder = params.pop("zorder")
|
|
@@ -125,6 +125,7 @@ class geom_violin(geom):
|
|
|
125
125
|
# in the range [zorder, zorder + 1) to stay within the layer.
|
|
126
126
|
group = cast("int", group)
|
|
127
127
|
group_zorder = zorder + 0.9 / group
|
|
128
|
+
params["zorder"] = group_zorder
|
|
128
129
|
|
|
129
130
|
# Find the points for the line to go all the way around
|
|
130
131
|
df["xminv"] = df["x"] - df["violinwidth"] * (df["x"] - df["xmin"])
|
|
@@ -167,8 +168,7 @@ class geom_violin(geom):
|
|
|
167
168
|
panel_params,
|
|
168
169
|
coord,
|
|
169
170
|
ax,
|
|
170
|
-
|
|
171
|
-
**params,
|
|
171
|
+
params,
|
|
172
172
|
)
|
|
173
173
|
|
|
174
174
|
if quantiles is not None:
|
|
@@ -190,8 +190,7 @@ class geom_violin(geom):
|
|
|
190
190
|
panel_params,
|
|
191
191
|
coord,
|
|
192
192
|
ax,
|
|
193
|
-
|
|
194
|
-
**params,
|
|
193
|
+
params,
|
|
195
194
|
)
|
|
196
195
|
|
|
197
196
|
|
plotnine/geoms/geom_vline.py
CHANGED
|
@@ -80,7 +80,6 @@ class geom_vline(geom):
|
|
|
80
80
|
panel_params: panel_view,
|
|
81
81
|
coord: coord,
|
|
82
82
|
ax: Axes,
|
|
83
|
-
**params: Any,
|
|
84
83
|
):
|
|
85
84
|
"""
|
|
86
85
|
Plot all groups
|
|
@@ -94,7 +93,9 @@ class geom_vline(geom):
|
|
|
94
93
|
|
|
95
94
|
for _, gdata in data.groupby("group"):
|
|
96
95
|
gdata.reset_index(inplace=True)
|
|
97
|
-
geom_segment.draw_group(
|
|
96
|
+
geom_segment.draw_group(
|
|
97
|
+
gdata, panel_params, coord, ax, self.params
|
|
98
|
+
)
|
|
98
99
|
|
|
99
100
|
@staticmethod
|
|
100
101
|
def draw_legend(
|
plotnine/guides/guides.py
CHANGED
|
@@ -369,7 +369,7 @@ class guides:
|
|
|
369
369
|
# place the guides according to the guide.order
|
|
370
370
|
default = max(g.order for g in gdefs) + 1
|
|
371
371
|
orders = [default if g.order == 0 else g.order for g in gdefs]
|
|
372
|
-
idx
|
|
372
|
+
idx = cast("Sequence[int]", np.argsort(orders))
|
|
373
373
|
gdefs = [gdefs[i] for i in idx]
|
|
374
374
|
|
|
375
375
|
# Draw each guide into a box
|
plotnine/layer.py
CHANGED
|
@@ -163,6 +163,7 @@ class layer:
|
|
|
163
163
|
self._make_layer_data(plot.data)
|
|
164
164
|
self._make_layer_mapping(plot.mapping)
|
|
165
165
|
self._make_layer_environments(plot.environment)
|
|
166
|
+
self._share_layer_params()
|
|
166
167
|
|
|
167
168
|
def _make_layer_data(self, plot_data: DataLike | None):
|
|
168
169
|
"""
|
|
@@ -250,6 +251,14 @@ class layer:
|
|
|
250
251
|
self.geom.environment = plot_environment
|
|
251
252
|
self.stat.environment = plot_environment
|
|
252
253
|
|
|
254
|
+
def _share_layer_params(self):
|
|
255
|
+
"""
|
|
256
|
+
Pass necessary layer parameters to the geom
|
|
257
|
+
"""
|
|
258
|
+
self.geom.params["zorder"] = self.zorder
|
|
259
|
+
self.geom.params["raster"] = self.raster
|
|
260
|
+
self.geom.params["inherit_aes"] = self.inherit_aes
|
|
261
|
+
|
|
253
262
|
def compute_aesthetics(self, plot: ggplot):
|
|
254
263
|
"""
|
|
255
264
|
Return a dataframe where the columns match the aesthetic mappings
|
|
@@ -278,10 +287,10 @@ class layer:
|
|
|
278
287
|
if not len(data):
|
|
279
288
|
return
|
|
280
289
|
|
|
281
|
-
|
|
290
|
+
self.stat.setup_params(data)
|
|
282
291
|
data = self.stat.use_defaults(data)
|
|
283
292
|
data = self.stat.setup_data(data)
|
|
284
|
-
data = self.stat.compute_layer(data,
|
|
293
|
+
data = self.stat.compute_layer(data, layout)
|
|
285
294
|
self.data = data
|
|
286
295
|
|
|
287
296
|
def map_statistic(self, plot: ggplot):
|
|
@@ -320,6 +329,9 @@ class layer:
|
|
|
320
329
|
if len(data) == 0:
|
|
321
330
|
return
|
|
322
331
|
|
|
332
|
+
self.geom.params.update(self.stat.params)
|
|
333
|
+
self.geom.setup_params(data)
|
|
334
|
+
self.geom.setup_aes_params(data)
|
|
323
335
|
data = self.geom.setup_data(data)
|
|
324
336
|
|
|
325
337
|
check_required_aesthetics(
|
|
@@ -357,14 +369,10 @@ class layer:
|
|
|
357
369
|
coord : coord
|
|
358
370
|
Type of coordinate axes
|
|
359
371
|
"""
|
|
360
|
-
params = copy(self.geom.params)
|
|
361
|
-
params.update(self.stat.params)
|
|
362
|
-
params["zorder"] = self.zorder
|
|
363
|
-
params["raster"] = self.raster
|
|
364
372
|
self.data = self.geom.handle_na(self.data)
|
|
365
373
|
# At this point each layer must have the data
|
|
366
374
|
# that is created by the plot build process
|
|
367
|
-
self.geom.draw_layer(self.data, layout, coord
|
|
375
|
+
self.geom.draw_layer(self.data, layout, coord)
|
|
368
376
|
|
|
369
377
|
def use_defaults(
|
|
370
378
|
self,
|
|
@@ -399,7 +407,7 @@ class layer:
|
|
|
399
407
|
"""
|
|
400
408
|
Prepare/modify data for plotting
|
|
401
409
|
"""
|
|
402
|
-
self.stat.finish_layer(self.data
|
|
410
|
+
self.stat.finish_layer(self.data)
|
|
403
411
|
|
|
404
412
|
|
|
405
413
|
class Layers(List[layer]):
|
|
@@ -450,7 +458,9 @@ class Layers(List[layer]):
|
|
|
450
458
|
return [l.data for l in self]
|
|
451
459
|
|
|
452
460
|
def setup(self, plot: ggplot):
|
|
453
|
-
|
|
461
|
+
# If zorder is 0, it is left to MPL
|
|
462
|
+
for i, l in enumerate(self, start=1):
|
|
463
|
+
l.zorder = i
|
|
454
464
|
l.setup(plot)
|
|
455
465
|
|
|
456
466
|
def setup_data(self):
|
|
@@ -458,9 +468,7 @@ class Layers(List[layer]):
|
|
|
458
468
|
l.setup_data()
|
|
459
469
|
|
|
460
470
|
def draw(self, layout: Layout, coord: coord):
|
|
461
|
-
|
|
462
|
-
for i, l in enumerate(self, start=1):
|
|
463
|
-
l.zorder = i
|
|
471
|
+
for l in self:
|
|
464
472
|
l.draw(layout, coord)
|
|
465
473
|
|
|
466
474
|
def compute_aesthetics(self, plot: ggplot):
|
|
@@ -48,7 +48,7 @@ def factor(
|
|
|
48
48
|
`categories` attribute (which in turn is the `categories` argument, if
|
|
49
49
|
provided).
|
|
50
50
|
"""
|
|
51
|
-
return pd.Categorical(values, categories=categories, ordered=None)
|
|
51
|
+
return pd.Categorical(values, categories=categories, ordered=None) # pyright: ignore[reportArgumentType]
|
|
52
52
|
|
|
53
53
|
|
|
54
54
|
def reorder(x, y, fun=np.median, ascending=True):
|