phylogenie 2.0.4__py3-none-any.whl → 2.0.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (22) hide show
  1. phylogenie/generators/alisim.py +4 -3
  2. phylogenie/generators/configs.py +15 -19
  3. phylogenie/generators/dataset.py +3 -4
  4. phylogenie/generators/factories.py +9 -9
  5. phylogenie/generators/trees.py +62 -48
  6. phylogenie/generators/typeguards.py +9 -13
  7. phylogenie/main.py +4 -0
  8. phylogenie/skyline/matrix.py +3 -3
  9. phylogenie/skyline/parameter.py +4 -4
  10. phylogenie/skyline/vector.py +7 -9
  11. phylogenie/tree.py +19 -10
  12. phylogenie/treesimulator/__init__.py +2 -0
  13. phylogenie/treesimulator/events.py +89 -73
  14. phylogenie/treesimulator/gillespie.py +29 -12
  15. phylogenie/treesimulator/model.py +113 -59
  16. phylogenie/typeguards.py +10 -10
  17. {phylogenie-2.0.4.dist-info → phylogenie-2.0.6.dist-info}/METADATA +2 -2
  18. phylogenie-2.0.6.dist-info/RECORD +28 -0
  19. phylogenie-2.0.4.dist-info/RECORD +0 -28
  20. {phylogenie-2.0.4.dist-info → phylogenie-2.0.6.dist-info}/LICENSE.txt +0 -0
  21. {phylogenie-2.0.4.dist-info → phylogenie-2.0.6.dist-info}/WHEEL +0 -0
  22. {phylogenie-2.0.4.dist-info → phylogenie-2.0.6.dist-info}/entry_points.txt +0 -0
phylogenie-2.0.4.dist-info/RECORD DELETED
@@ -1,28 +0,0 @@
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- phylogenie/__init__.py,sha256=1w_0H9lg7hI3b-NLjKuzc34GbJJGyjLq9LrlogecTzI,1759
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- phylogenie/generators/__init__.py,sha256=zsOxy28-9j9alOQLIgrOAFfmM58NNHO_NEtW-KXQXAY,888
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- phylogenie/generators/alisim.py,sha256=Psh_fAHHrJBCd1kqVtz_BdoVVmNvieHJRMmapQncJhM,2288
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- phylogenie/generators/configs.py,sha256=uiqPvdGSwmItQmhRMT-s1xG7DVnfpwaDTZ_wztL1Pwo,1123
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- phylogenie/generators/dataset.py,sha256=ASchKbUZ96i4JAd_kEhb16S3fua0PpcEkxkQ0oyLq00,2581
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- phylogenie/generators/factories.py,sha256=lJ517JC0T8fVu_2NBNC1GUbMPQfRNeNpO5rGdxubQOA,6998
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- phylogenie/generators/trees.py,sha256=pSqnYslDMPl4OVsIUFgQu_Rtc2htlBVwhIWnYgSAr3s,8735
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- phylogenie/generators/typeguards.py,sha256=6WIQIy6huHok4vYqA9ym6g2kvyyXPggBONWwbiHtDiY,925
9
- phylogenie/io.py,sha256=ZXlofnSh7FX5UJiP0svRHrTraMSNgKa1GiAv0bMz7jU,2854
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- phylogenie/main.py,sha256=vtvSpQxBNlYABoFQ25czl-l3fIr4QRo3svWVd-jcArw,1170
11
- phylogenie/msa.py,sha256=JDGyZUsAq6-m-SQjoCDjAkAZIxfgyl_PDIhdYn5HOow,2064
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- phylogenie/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
13
- phylogenie/skyline/__init__.py,sha256=7pF4CUb4ZCLzNYJNhOjpuTOLTRhlK7L6ugfccNqjIGo,620
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- phylogenie/skyline/matrix.py,sha256=BnIreEyCymWzo5jiFtLWXE33ck0pbOFNAfcJW7S2m2s,9147
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- phylogenie/skyline/parameter.py,sha256=CJ5OEyRQG2Tg1WJWQ1IpfX-6hjJv80Zj8lMoRke5nnQ,4648
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- phylogenie/skyline/vector.py,sha256=becZlWLeT12mvpDC5MLGXZPKlgmbkY-DEcuhdQpnsSc,7135
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- phylogenie/tree.py,sha256=nNUQrTtUqgc-Z6CHflqROZ8W2ZL1YWGG7xeWmcKwZUU,1684
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- phylogenie/treesimulator/__init__.py,sha256=koyVZxKUeMtY1S2WUgqbeIthoGbdUmx9vP4svFi4a6U,459
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- phylogenie/treesimulator/events.py,sha256=RfFodTxMAPUtI3ZkDmw5ekXCaRGnQ8Sy3tjR4oJ8CW4,9636
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- phylogenie/treesimulator/gillespie.py,sha256=p2bjwc6iyaf4mMI-xregJwOnXkjT2tIhxXbcGncQ5b0,2293
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- phylogenie/treesimulator/model.py,sha256=pPl4JYnBIHjWeSgpIypaDOes11tA4bFAGuMRArXbsVo,3577
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- phylogenie/typeguards.py,sha256=WBOSJSaOC8VDtrYoA2w_AYEXTpyKdCfmsM29KaKXl3A,1350
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- phylogenie/typings.py,sha256=O1X6lGKTjJ2YJz3ApQ-rYb_tEJNUIcHdUIeYlSM4s5o,500
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- phylogenie-2.0.4.dist-info/LICENSE.txt,sha256=NUrDqElK-eD3I0WqC004CJsy6cs0JgsAoebDv_42-pw,1071
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- phylogenie-2.0.4.dist-info/METADATA,sha256=uY5a9_62a3S3AO__S3GjFHGZ_JEpzYD7tQUx7Wg4gjQ,5456
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- phylogenie-2.0.4.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- phylogenie-2.0.4.dist-info/entry_points.txt,sha256=Rt6_usN0FkBX1ZfiqCirjMN9FKOgFLG8rydcQ8kugeE,51
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- phylogenie-2.0.4.dist-info/RECORD,,