phenoml 0.0.6__py3-none-any.whl

phenoml/tools/types/__init__.py

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+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .cohort_response import CohortResponse
+from .lang2fhir_and_create_request_resource import Lang2FhirAndCreateRequestResource
+from .lang2fhir_and_create_response import Lang2FhirAndCreateResponse
+from .lang2fhir_and_search_response import Lang2FhirAndSearchResponse
+from .mcp_server_response import McpServerResponse
+from .mcp_server_response_data import McpServerResponseData
+from .mcp_server_tool_call_response import McpServerToolCallResponse
+from .mcp_server_tool_response import McpServerToolResponse
+from .mcp_server_tool_response_data import McpServerToolResponseData
+from .search_concept import SearchConcept
+
+__all__ = [
+    "CohortResponse",
+    "Lang2FhirAndCreateRequestResource",
+    "Lang2FhirAndCreateResponse",
+    "Lang2FhirAndSearchResponse",
+    "McpServerResponse",
+    "McpServerResponseData",
+    "McpServerToolCallResponse",
+    "McpServerToolResponse",
+    "McpServerToolResponseData",
+    "SearchConcept",
+]

phenoml/tools/types/cohort_response.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+import typing_extensions
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from ...core.serialization import FieldMetadata
+from .search_concept import SearchConcept
+
+
+class CohortResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether the cohort analysis was successful
+    """
+
+    message: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Status message with details about the analysis
+    """
+
+    patient_ids: typing_extensions.Annotated[typing.Optional[typing.List[str]], FieldMetadata(alias="patientIds")] = (
+        pydantic.Field(default=None)
+    )
+    """
+    Array of patient IDs that match the cohort criteria
+    """
+
+    patient_count: typing_extensions.Annotated[typing.Optional[int], FieldMetadata(alias="patientCount")] = (
+        pydantic.Field(default=None)
+    )
+    """
+    Total number of patients in the cohort
+    """
+
+    queries: typing.Optional[typing.List[SearchConcept]] = pydantic.Field(default=None)
+    """
+    Individual search concepts that were identified and executed
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/lang2fhir_and_create_request_resource.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+Lang2FhirAndCreateRequestResource = typing.Union[
+    typing.Literal[
+        "auto",
+        "appointment",
+        "condition-encounter-diagnosis",
+        "medicationrequest",
+        "careplan",
+        "condition-problems-health-concerns",
+        "coverage",
+        "encounter",
+        "observation-clinical-result",
+        "observation-lab",
+        "patient",
+        "procedure",
+        "questionnaire",
+        "questionnaireresponse",
+        "simple-observation",
+        "vital-signs",
+    ],
+    typing.Any,
+]

phenoml/tools/types/lang2fhir_and_create_response.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class Lang2FhirAndCreateResponse(UniversalBaseModel):
+    fhir_resource: typing.Optional[typing.Dict[str, typing.Optional[typing.Any]]] = pydantic.Field(default=None)
+    """
+    The created FHIR resource
+    """
+
+    fhir_id: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    ID of the resource in the FHIR server (if successfully stored)
+    """
+
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Status message
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/lang2fhir_and_search_response.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class Lang2FhirAndSearchResponse(UniversalBaseModel):
+    resource_type: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    The FHIR resource type identified for the search
+    """
+
+    search_params: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    FHIR search parameters in standard format
+    """
+
+    fhir_results: typing.Optional[typing.List[typing.Dict[str, typing.Optional[typing.Any]]]] = pydantic.Field(
+        default=None
+    )
+    """
+    Array of FHIR resources returned from the search
+    """
+
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Status message
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/mcp_server_response.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .mcp_server_response_data import McpServerResponseData
+
+
+class McpServerResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether the MCP server was created successfully
+    """
+
+    message: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Status message
+    """
+
+    data: typing.Optional[McpServerResponseData] = pydantic.Field(default=None)
+    """
+    MCP server data
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/mcp_server_response_data.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class McpServerResponseData(UniversalBaseModel):
+    """
+    MCP server data
+    """
+
+    id: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    ID of the MCP server
+    """
+
+    user_id: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    ID of the user who created the MCP server
+    """
+
+    name: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Name of the MCP server
+    """
+
+    description: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Description of the MCP server
+    """
+
+    mcp_server_url: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    URL of the MCP server
+    """
+
+    is_active: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether the MCP server is active
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/mcp_server_tool_call_response.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class McpServerToolCallResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether the MCP server tool was called successfully
+    """
+
+    message: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Status message
+    """
+
+    result: typing.Optional[typing.Dict[str, typing.Optional[typing.Any]]] = pydantic.Field(default=None)
+    """
+    Result of the MCP server tool call
+    """
+
+    error: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Error message if the call failed
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/mcp_server_tool_response.py

@@ -0,0 +1,33 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .mcp_server_tool_response_data import McpServerToolResponseData
+
+
+class McpServerToolResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether the MCP server tool was created successfully
+    """
+
+    message: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Status message
+    """
+
+    data: typing.Optional[McpServerToolResponseData] = pydantic.Field(default=None)
+    """
+    MCP server tool data
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/mcp_server_tool_response_data.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class McpServerToolResponseData(UniversalBaseModel):
+    """
+    MCP server tool data
+    """
+
+    id: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    ID of the MCP server tool
+    """
+
+    user_id: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    ID of the user who created the MCP server tool
+    """
+
+    name: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Name of the MCP server tool
+    """
+
+    description: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Description of the MCP server tool
+    """
+
+    input_schema: typing.Optional[typing.Dict[str, typing.Optional[typing.Any]]] = pydantic.Field(default=None)
+    """
+    Input schema of the MCP server tool
+    """
+
+    mcp_server_id: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    ID of the MCP server that the tool belongs to
+    """
+
+    mcp_server_url: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    URL of the MCP server
+    """
+
+    is_active: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether the MCP server tool is active
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/types/search_concept.py

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+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class SearchConcept(UniversalBaseModel):
+    """
+    A single search concept detected in cohort mode
+    """
+
+    resource_type: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    The FHIR resource type identified for this concept
+    """
+
+    search_params: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    FHIR search parameters for this concept
+    """
+
+    concept: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Description of what this search represents
+    """
+
+    exclude: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether this is an exclusion criteria
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/types/__init__.py

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+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .cohort_response import CohortResponse
+from .lang2fhir_and_create_response import Lang2FhirAndCreateResponse
+from .lang2fhir_and_search_response import Lang2FhirAndSearchResponse
+from .mcp_server_response import McpServerResponse
+from .mcp_server_tool_call_response import McpServerToolCallResponse
+from .mcp_server_tool_response import McpServerToolResponse
+from .search_concept import SearchConcept
+
+__all__ = [
+    "CohortResponse",
+    "Lang2FhirAndCreateResponse",
+    "Lang2FhirAndSearchResponse",
+    "McpServerResponse",
+    "McpServerToolCallResponse",
+    "McpServerToolResponse",
+    "SearchConcept",
+]

phenoml/types/cohort_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+CohortResponse = typing.Optional[typing.Any]

phenoml/types/lang2fhir_and_create_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+Lang2FhirAndCreateResponse = typing.Optional[typing.Any]

phenoml/types/lang2fhir_and_search_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+Lang2FhirAndSearchResponse = typing.Optional[typing.Any]

phenoml/types/mcp_server_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+McpServerResponse = typing.Optional[typing.Any]

phenoml/types/mcp_server_tool_call_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+McpServerToolCallResponse = typing.Optional[typing.Any]

phenoml/types/mcp_server_tool_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+McpServerToolResponse = typing.Optional[typing.Any]

phenoml/types/search_concept.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+SearchConcept = typing.Optional[typing.Any]

phenoml/version.py

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+from importlib import metadata
+
+__version__ = metadata.version("phenoml")

phenoml/workflows/__init__.py

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+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .types import (
+    CreateWorkflowResponse,
+    DecisionNodeDefinition,
+    ExecuteWorkflowResponse,
+    ExecuteWorkflowResponseResults,
+    Lang2FhirCreateDefinition,
+    Lang2FhirSearchDefinition,
+    ListWorkflowsResponse,
+    StepOperation,
+    SubWorkflowDefinition,
+    WorkflowConfig,
+    WorkflowDefinition,
+    WorkflowGraph,
+    WorkflowResponse,
+    WorkflowResponseGraph,
+    WorkflowStep,
+    WorkflowStepSummary,
+    WorkflowStepSummaryType,
+    WorkflowStepType,
+)
+from .errors import BadRequestError, ForbiddenError, InternalServerError, NotFoundError, UnauthorizedError
+from . import mcp_server, workflows
+from .workflows import (
+    CreateWorkflowRequestFhirProviderId,
+    UpdateWorkflowRequestFhirProviderId,
+    WorkflowsDeleteResponse,
+    WorkflowsGetResponse,
+    WorkflowsUpdateResponse,
+)
+
+__all__ = [
+    "BadRequestError",
+    "CreateWorkflowRequestFhirProviderId",
+    "CreateWorkflowResponse",
+    "DecisionNodeDefinition",
+    "ExecuteWorkflowResponse",
+    "ExecuteWorkflowResponseResults",
+    "ForbiddenError",
+    "InternalServerError",
+    "Lang2FhirCreateDefinition",
+    "Lang2FhirSearchDefinition",
+    "ListWorkflowsResponse",
+    "NotFoundError",
+    "StepOperation",
+    "SubWorkflowDefinition",
+    "UnauthorizedError",
+    "UpdateWorkflowRequestFhirProviderId",
+    "WorkflowConfig",
+    "WorkflowDefinition",
+    "WorkflowGraph",
+    "WorkflowResponse",
+    "WorkflowResponseGraph",
+    "WorkflowStep",
+    "WorkflowStepSummary",
+    "WorkflowStepSummaryType",
+    "WorkflowStepType",
+    "WorkflowsDeleteResponse",
+    "WorkflowsGetResponse",
+    "WorkflowsUpdateResponse",
+    "mcp_server",
+    "workflows",
+]