phenoml 0.0.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (244) hide show
  1. phenoml/__init__.py +30 -0
  2. phenoml/agent/__init__.py +56 -0
  3. phenoml/agent/client.py +939 -0
  4. phenoml/agent/errors/__init__.py +11 -0
  5. phenoml/agent/errors/bad_request_error.py +10 -0
  6. phenoml/agent/errors/forbidden_error.py +10 -0
  7. phenoml/agent/errors/internal_server_error.py +10 -0
  8. phenoml/agent/errors/not_found_error.py +10 -0
  9. phenoml/agent/errors/unauthorized_error.py +10 -0
  10. phenoml/agent/prompts/__init__.py +7 -0
  11. phenoml/agent/prompts/client.py +707 -0
  12. phenoml/agent/prompts/raw_client.py +1345 -0
  13. phenoml/agent/prompts/types/__init__.py +8 -0
  14. phenoml/agent/prompts/types/prompts_delete_response.py +20 -0
  15. phenoml/agent/prompts/types/prompts_list_response.py +22 -0
  16. phenoml/agent/raw_client.py +1668 -0
  17. phenoml/agent/types/__init__.py +43 -0
  18. phenoml/agent/types/agent_chat_response.py +33 -0
  19. phenoml/agent/types/agent_create_request.py +53 -0
  20. phenoml/agent/types/agent_create_request_provider.py +5 -0
  21. phenoml/agent/types/agent_delete_response.py +20 -0
  22. phenoml/agent/types/agent_get_chat_messages_request_order.py +5 -0
  23. phenoml/agent/types/agent_get_chat_messages_response.py +22 -0
  24. phenoml/agent/types/agent_list_response.py +22 -0
  25. phenoml/agent/types/agent_prompts_response.py +22 -0
  26. phenoml/agent/types/agent_response.py +22 -0
  27. phenoml/agent/types/agent_template.py +58 -0
  28. phenoml/agent/types/agent_template_provider.py +5 -0
  29. phenoml/agent/types/chat_message_template.py +72 -0
  30. phenoml/agent/types/chat_session_template.py +67 -0
  31. phenoml/agent/types/json_patch.py +7 -0
  32. phenoml/agent/types/json_patch_operation.py +40 -0
  33. phenoml/agent/types/json_patch_operation_op.py +5 -0
  34. phenoml/agent/types/prompt_template.py +52 -0
  35. phenoml/agent/types/success_response.py +20 -0
  36. phenoml/authtoken/__init__.py +17 -0
  37. phenoml/authtoken/auth/__init__.py +7 -0
  38. phenoml/authtoken/auth/client.py +129 -0
  39. phenoml/authtoken/auth/raw_client.py +173 -0
  40. phenoml/authtoken/auth/types/__init__.py +7 -0
  41. phenoml/authtoken/auth/types/auth_generate_token_response.py +22 -0
  42. phenoml/authtoken/client.py +39 -0
  43. phenoml/authtoken/errors/__init__.py +8 -0
  44. phenoml/authtoken/errors/bad_request_error.py +10 -0
  45. phenoml/authtoken/errors/unauthorized_error.py +10 -0
  46. phenoml/authtoken/raw_client.py +13 -0
  47. phenoml/authtoken/types/__init__.py +8 -0
  48. phenoml/authtoken/types/bad_request_error_body.py +21 -0
  49. phenoml/authtoken/types/unauthorized_error_body.py +21 -0
  50. phenoml/client.py +177 -0
  51. phenoml/cohort/__init__.py +8 -0
  52. phenoml/cohort/client.py +113 -0
  53. phenoml/cohort/errors/__init__.py +9 -0
  54. phenoml/cohort/errors/bad_request_error.py +10 -0
  55. phenoml/cohort/errors/internal_server_error.py +10 -0
  56. phenoml/cohort/errors/unauthorized_error.py +10 -0
  57. phenoml/cohort/raw_client.py +185 -0
  58. phenoml/cohort/types/__init__.py +8 -0
  59. phenoml/cohort/types/cohort_response.py +33 -0
  60. phenoml/cohort/types/search_concept.py +37 -0
  61. phenoml/construe/__init__.py +45 -0
  62. phenoml/construe/client.py +399 -0
  63. phenoml/construe/errors/__init__.py +11 -0
  64. phenoml/construe/errors/bad_request_error.py +10 -0
  65. phenoml/construe/errors/conflict_error.py +10 -0
  66. phenoml/construe/errors/failed_dependency_error.py +10 -0
  67. phenoml/construe/errors/internal_server_error.py +10 -0
  68. phenoml/construe/errors/unauthorized_error.py +10 -0
  69. phenoml/construe/raw_client.py +706 -0
  70. phenoml/construe/types/__init__.py +41 -0
  71. phenoml/construe/types/bad_request_error_body.py +27 -0
  72. phenoml/construe/types/construe_cohort_request_config.py +37 -0
  73. phenoml/construe/types/construe_cohort_response.py +33 -0
  74. phenoml/construe/types/construe_cohort_response_queries_item.py +49 -0
  75. phenoml/construe/types/construe_cohort_response_queries_item_code_extract_results_item.py +31 -0
  76. phenoml/construe/types/construe_cohort_response_queries_item_code_extract_results_item_codes_item.py +32 -0
  77. phenoml/construe/types/construe_upload_code_system_response.py +19 -0
  78. phenoml/construe/types/extract_codes_result.py +22 -0
  79. phenoml/construe/types/extract_request_config.py +23 -0
  80. phenoml/construe/types/extract_request_config_chunking_method.py +5 -0
  81. phenoml/construe/types/extract_request_system.py +37 -0
  82. phenoml/construe/types/extracted_code_result.py +41 -0
  83. phenoml/construe/types/internal_server_error_body.py +27 -0
  84. phenoml/construe/types/unauthorized_error_body.py +27 -0
  85. phenoml/construe/types/upload_request_format.py +5 -0
  86. phenoml/core/__init__.py +52 -0
  87. phenoml/core/api_error.py +23 -0
  88. phenoml/core/client_wrapper.py +87 -0
  89. phenoml/core/datetime_utils.py +28 -0
  90. phenoml/core/file.py +67 -0
  91. phenoml/core/force_multipart.py +16 -0
  92. phenoml/core/http_client.py +543 -0
  93. phenoml/core/http_response.py +55 -0
  94. phenoml/core/jsonable_encoder.py +100 -0
  95. phenoml/core/pydantic_utilities.py +255 -0
  96. phenoml/core/query_encoder.py +58 -0
  97. phenoml/core/remove_none_from_dict.py +11 -0
  98. phenoml/core/request_options.py +35 -0
  99. phenoml/core/serialization.py +276 -0
  100. phenoml/environment.py +7 -0
  101. phenoml/fhir/__init__.py +36 -0
  102. phenoml/fhir/client.py +970 -0
  103. phenoml/fhir/errors/__init__.py +10 -0
  104. phenoml/fhir/errors/bad_request_error.py +10 -0
  105. phenoml/fhir/errors/internal_server_error.py +10 -0
  106. phenoml/fhir/errors/not_found_error.py +10 -0
  107. phenoml/fhir/errors/unauthorized_error.py +10 -0
  108. phenoml/fhir/raw_client.py +1385 -0
  109. phenoml/fhir/types/__init__.py +29 -0
  110. phenoml/fhir/types/error_response.py +36 -0
  111. phenoml/fhir/types/fhir_bundle.py +43 -0
  112. phenoml/fhir/types/fhir_bundle_entry_item.py +34 -0
  113. phenoml/fhir/types/fhir_bundle_entry_item_request.py +25 -0
  114. phenoml/fhir/types/fhir_bundle_entry_item_request_method.py +5 -0
  115. phenoml/fhir/types/fhir_bundle_entry_item_response.py +24 -0
  116. phenoml/fhir/types/fhir_patch_request_body_item.py +40 -0
  117. phenoml/fhir/types/fhir_patch_request_body_item_op.py +7 -0
  118. phenoml/fhir/types/fhir_resource.py +40 -0
  119. phenoml/fhir/types/fhir_resource_meta.py +28 -0
  120. phenoml/fhir/types/fhir_search_response.py +8 -0
  121. phenoml/fhir_provider/__init__.py +43 -0
  122. phenoml/fhir_provider/client.py +731 -0
  123. phenoml/fhir_provider/errors/__init__.py +11 -0
  124. phenoml/fhir_provider/errors/bad_request_error.py +10 -0
  125. phenoml/fhir_provider/errors/forbidden_error.py +10 -0
  126. phenoml/fhir_provider/errors/internal_server_error.py +10 -0
  127. phenoml/fhir_provider/errors/not_found_error.py +10 -0
  128. phenoml/fhir_provider/errors/unauthorized_error.py +10 -0
  129. phenoml/fhir_provider/raw_client.py +1445 -0
  130. phenoml/fhir_provider/types/__init__.py +35 -0
  131. phenoml/fhir_provider/types/auth_method.py +7 -0
  132. phenoml/fhir_provider/types/fhir_provider_auth_config.py +53 -0
  133. phenoml/fhir_provider/types/fhir_provider_delete_response.py +20 -0
  134. phenoml/fhir_provider/types/fhir_provider_list_response.py +22 -0
  135. phenoml/fhir_provider/types/fhir_provider_remove_auth_config_response.py +22 -0
  136. phenoml/fhir_provider/types/fhir_provider_response.py +22 -0
  137. phenoml/fhir_provider/types/fhir_provider_set_active_auth_config_response.py +22 -0
  138. phenoml/fhir_provider/types/fhir_provider_template.py +66 -0
  139. phenoml/fhir_provider/types/fhir_query_response.py +27 -0
  140. phenoml/fhir_provider/types/fhir_query_response_data.py +5 -0
  141. phenoml/fhir_provider/types/json_web_key.py +51 -0
  142. phenoml/fhir_provider/types/provider.py +8 -0
  143. phenoml/fhir_provider/types/service_account_key.py +35 -0
  144. phenoml/fhir_provider/types/smart_configuration.py +46 -0
  145. phenoml/lang2fhir/__init__.py +27 -0
  146. phenoml/lang2fhir/client.py +430 -0
  147. phenoml/lang2fhir/errors/__init__.py +11 -0
  148. phenoml/lang2fhir/errors/bad_request_error.py +10 -0
  149. phenoml/lang2fhir/errors/failed_dependency_error.py +10 -0
  150. phenoml/lang2fhir/errors/forbidden_error.py +10 -0
  151. phenoml/lang2fhir/errors/internal_server_error.py +10 -0
  152. phenoml/lang2fhir/errors/unauthorized_error.py +10 -0
  153. phenoml/lang2fhir/raw_client.py +788 -0
  154. phenoml/lang2fhir/types/__init__.py +19 -0
  155. phenoml/lang2fhir/types/create_request_resource.py +25 -0
  156. phenoml/lang2fhir/types/document_request_file_type.py +7 -0
  157. phenoml/lang2fhir/types/document_request_resource.py +5 -0
  158. phenoml/lang2fhir/types/fhir_resource.py +5 -0
  159. phenoml/lang2fhir/types/lang2fhir_upload_profile_response.py +23 -0
  160. phenoml/lang2fhir/types/search_response.py +33 -0
  161. phenoml/py.typed +0 -0
  162. phenoml/tools/__init__.py +37 -0
  163. phenoml/tools/client.py +359 -0
  164. phenoml/tools/errors/__init__.py +11 -0
  165. phenoml/tools/errors/bad_request_error.py +10 -0
  166. phenoml/tools/errors/failed_dependency_error.py +10 -0
  167. phenoml/tools/errors/forbidden_error.py +10 -0
  168. phenoml/tools/errors/internal_server_error.py +10 -0
  169. phenoml/tools/errors/unauthorized_error.py +10 -0
  170. phenoml/tools/mcp_server/__init__.py +7 -0
  171. phenoml/tools/mcp_server/client.py +336 -0
  172. phenoml/tools/mcp_server/raw_client.py +641 -0
  173. phenoml/tools/mcp_server/tools/__init__.py +4 -0
  174. phenoml/tools/mcp_server/tools/client.py +358 -0
  175. phenoml/tools/mcp_server/tools/raw_client.py +656 -0
  176. phenoml/tools/raw_client.py +696 -0
  177. phenoml/tools/types/__init__.py +27 -0
  178. phenoml/tools/types/cohort_response.py +49 -0
  179. phenoml/tools/types/lang2fhir_and_create_request_resource.py +25 -0
  180. phenoml/tools/types/lang2fhir_and_create_response.py +33 -0
  181. phenoml/tools/types/lang2fhir_and_search_response.py +40 -0
  182. phenoml/tools/types/mcp_server_response.py +33 -0
  183. phenoml/tools/types/mcp_server_response_data.py +51 -0
  184. phenoml/tools/types/mcp_server_tool_call_response.py +37 -0
  185. phenoml/tools/types/mcp_server_tool_response.py +33 -0
  186. phenoml/tools/types/mcp_server_tool_response_data.py +61 -0
  187. phenoml/tools/types/search_concept.py +41 -0
  188. phenoml/types/__init__.py +21 -0
  189. phenoml/types/cohort_response.py +5 -0
  190. phenoml/types/lang2fhir_and_create_response.py +5 -0
  191. phenoml/types/lang2fhir_and_search_response.py +5 -0
  192. phenoml/types/mcp_server_response.py +5 -0
  193. phenoml/types/mcp_server_tool_call_response.py +5 -0
  194. phenoml/types/mcp_server_tool_response.py +5 -0
  195. phenoml/types/search_concept.py +5 -0
  196. phenoml/version.py +3 -0
  197. phenoml/workflows/__init__.py +66 -0
  198. phenoml/workflows/client.py +210 -0
  199. phenoml/workflows/errors/__init__.py +11 -0
  200. phenoml/workflows/errors/bad_request_error.py +10 -0
  201. phenoml/workflows/errors/forbidden_error.py +10 -0
  202. phenoml/workflows/errors/internal_server_error.py +10 -0
  203. phenoml/workflows/errors/not_found_error.py +10 -0
  204. phenoml/workflows/errors/unauthorized_error.py +10 -0
  205. phenoml/workflows/mcp_server/__init__.py +7 -0
  206. phenoml/workflows/mcp_server/client.py +274 -0
  207. phenoml/workflows/mcp_server/raw_client.py +226 -0
  208. phenoml/workflows/mcp_server/tools/__init__.py +4 -0
  209. phenoml/workflows/mcp_server/tools/client.py +287 -0
  210. phenoml/workflows/mcp_server/tools/raw_client.py +244 -0
  211. phenoml/workflows/raw_client.py +169 -0
  212. phenoml/workflows/types/__init__.py +43 -0
  213. phenoml/workflows/types/create_workflow_response.py +44 -0
  214. phenoml/workflows/types/decision_node_definition.py +32 -0
  215. phenoml/workflows/types/execute_workflow_response.py +30 -0
  216. phenoml/workflows/types/execute_workflow_response_results.py +22 -0
  217. phenoml/workflows/types/lang2fhir_create_definition.py +37 -0
  218. phenoml/workflows/types/lang2fhir_search_definition.py +42 -0
  219. phenoml/workflows/types/list_workflows_response.py +39 -0
  220. phenoml/workflows/types/step_operation.py +26 -0
  221. phenoml/workflows/types/sub_workflow_definition.py +32 -0
  222. phenoml/workflows/types/workflow_config.py +27 -0
  223. phenoml/workflows/types/workflow_definition.py +57 -0
  224. phenoml/workflows/types/workflow_graph.py +23 -0
  225. phenoml/workflows/types/workflow_response.py +61 -0
  226. phenoml/workflows/types/workflow_response_graph.py +23 -0
  227. phenoml/workflows/types/workflow_step.py +55 -0
  228. phenoml/workflows/types/workflow_step_summary.py +47 -0
  229. phenoml/workflows/types/workflow_step_summary_type.py +5 -0
  230. phenoml/workflows/types/workflow_step_type.py +5 -0
  231. phenoml/workflows/workflows/__init__.py +19 -0
  232. phenoml/workflows/workflows/client.py +694 -0
  233. phenoml/workflows/workflows/raw_client.py +1266 -0
  234. phenoml/workflows/workflows/types/__init__.py +17 -0
  235. phenoml/workflows/workflows/types/create_workflow_request_fhir_provider_id.py +5 -0
  236. phenoml/workflows/workflows/types/update_workflow_request_fhir_provider_id.py +5 -0
  237. phenoml/workflows/workflows/types/workflows_delete_response.py +20 -0
  238. phenoml/workflows/workflows/types/workflows_get_response.py +26 -0
  239. phenoml/workflows/workflows/types/workflows_update_response.py +31 -0
  240. phenoml/wrapper_client.py +123 -0
  241. phenoml-0.0.6.dist-info/LICENSE +21 -0
  242. phenoml-0.0.6.dist-info/METADATA +192 -0
  243. phenoml-0.0.6.dist-info/RECORD +244 -0
  244. phenoml-0.0.6.dist-info/WHEEL +4 -0
phenoml/__init__.py ADDED
@@ -0,0 +1,30 @@
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+ # This file was auto-generated by Fern from our API Definition.
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+
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+ # isort: skip_file
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+
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+ from . import agent, authtoken, cohort, construe, lang2fhir, tools
6
+ from .client import Asyncphenoml, phenoml
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+ from .environment import phenomlEnvironment
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+ from .version import __version__
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+ from .wrapper_client import PhenoMLClient, AsyncPhenoMLClient
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+
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+ # Primary client classes (recommended)
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+ Client = PhenoMLClient
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+ AsyncClient = AsyncPhenoMLClient
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+
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+ __all__ = [
16
+ "Asyncphenoml",
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+ "AsyncPhenoMLClient",
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+ "AsyncClient", # Primary async client
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+ "PhenoMLClient",
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+ "Client", # Primary sync client
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+ "__version__",
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+ "agent",
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+ "authtoken",
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+ "cohort",
25
+ "construe",
26
+ "lang2fhir",
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+ "phenoml", # Base client (for advanced users)
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+ "phenomlEnvironment",
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+ "tools",
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+ ]
phenoml/agent/__init__.py ADDED
@@ -0,0 +1,56 @@
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+ # This file was auto-generated by Fern from our API Definition.
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+
3
+ # isort: skip_file
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+
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+ from .types import (
6
+ AgentChatResponse,
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+ AgentCreateRequest,
8
+ AgentCreateRequestProvider,
9
+ AgentDeleteResponse,
10
+ AgentGetChatMessagesRequestOrder,
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+ AgentGetChatMessagesResponse,
12
+ AgentListResponse,
13
+ AgentPromptsResponse,
14
+ AgentResponse,
15
+ AgentTemplate,
16
+ AgentTemplateProvider,
17
+ ChatMessageTemplate,
18
+ ChatSessionTemplate,
19
+ JsonPatch,
20
+ JsonPatchOperation,
21
+ JsonPatchOperationOp,
22
+ PromptTemplate,
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+ SuccessResponse,
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+ )
25
+ from .errors import BadRequestError, ForbiddenError, InternalServerError, NotFoundError, UnauthorizedError
26
+ from . import prompts
27
+ from .prompts import PromptsDeleteResponse, PromptsListResponse
28
+
29
+ __all__ = [
30
+ "AgentChatResponse",
31
+ "AgentCreateRequest",
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+ "AgentCreateRequestProvider",
33
+ "AgentDeleteResponse",
34
+ "AgentGetChatMessagesRequestOrder",
35
+ "AgentGetChatMessagesResponse",
36
+ "AgentListResponse",
37
+ "AgentPromptsResponse",
38
+ "AgentResponse",
39
+ "AgentTemplate",
40
+ "AgentTemplateProvider",
41
+ "BadRequestError",
42
+ "ChatMessageTemplate",
43
+ "ChatSessionTemplate",
44
+ "ForbiddenError",
45
+ "InternalServerError",
46
+ "JsonPatch",
47
+ "JsonPatchOperation",
48
+ "JsonPatchOperationOp",
49
+ "NotFoundError",
50
+ "PromptTemplate",
51
+ "PromptsDeleteResponse",
52
+ "PromptsListResponse",
53
+ "SuccessResponse",
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+ "UnauthorizedError",
55
+ "prompts",
56
+ ]