phenoml 0.0.2__py3-none-any.whl → 0.0.15__py3-none-any.whl

phenoml/workflows/types/workflow_step_type.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+WorkflowStepType = typing.Union[typing.Literal["search", "create", "workflow", "decision_node"], typing.Any]

phenoml/workflows/types/workflows_delete_response.py

@@ -0,0 +1,20 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class WorkflowsDeleteResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/workflows/types/workflows_get_response.py

@@ -0,0 +1,26 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .workflow_definition import WorkflowDefinition
+from .workflow_response import WorkflowResponse
+
+
+class WorkflowsGetResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    workflow: typing.Optional[WorkflowResponse] = None
+    workflow_details: typing.Optional[WorkflowDefinition] = pydantic.Field(default=None)
+    """
+    Only included when verbose=true - contains full implementation details
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/workflows/types/workflows_update_response.py

@@ -0,0 +1,31 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .workflow_definition import WorkflowDefinition
+from .workflow_response import WorkflowResponse
+
+
+class WorkflowsUpdateResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = None
+    workflow: typing.Optional[WorkflowResponse] = pydantic.Field(default=None)
+    """
+    Simplified workflow response with only essential step information
+    """
+
+    workflow_details: typing.Optional[WorkflowDefinition] = pydantic.Field(default=None)
+    """
+    Only included when verbose=true - contains full implementation details
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml-0.0.15.dist-info/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2025 PhenoML
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

{phenoml-0.0.2.dist-info → phenoml-0.0.15.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: phenoml
-Version: 0.0.2
+Version: 0.0.15
 Summary: 
 Requires-Python: >=3.8,<4.0
 Classifier: Intended Audience :: Developers

phenoml-0.0.15.dist-info/RECORD

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phenoml/agent/types/agent_provider.py

@@ -1,7 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-from .provider_type import ProviderType
-
-AgentProvider = typing.Union[ProviderType, typing.List[ProviderType]]

phenoml/agent/types/provider_type.py

@@ -1,5 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-ProviderType = typing.Union[typing.Literal["medplum", "google_healthcare", "canvas", "hapi"], typing.Any]

phenoml/construe/types/construe_cohort_request_config.py

@@ -1,37 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-import pydantic
-from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
-
-
-class ConstrueCohortRequestConfig(UniversalBaseModel):
-    include_extract_results: typing.Optional[bool] = pydantic.Field(default=None)
-    """
-    When enabled, includes detailed information about medical codes extracted from the text.
-    """
-
-    include_rationale: typing.Optional[bool] = pydantic.Field(default=None)
-    """
-    When enabled, includes AI-generated explanations for each query component and code extraction.
-    """
-
-    exclude_deceased: typing.Optional[bool] = pydantic.Field(default=None)
-    """
-    Controls whether deceased patients should be excluded from the cohort.
-    """
-
-    sql_syntax: typing.Optional[typing.Literal["bigquery"]] = pydantic.Field(default=None)
-    """
-    Specifies the SQL dialect for query generation. Currently, only "bigquery" is supported.
-    """
-
-    if IS_PYDANTIC_V2:
-        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
-    else:
-
-        class Config:
-            frozen = True
-            smart_union = True
-            extra = pydantic.Extra.allow

phenoml/construe/types/construe_cohort_response.py

@@ -1,33 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-import pydantic
-import typing_extensions
-from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
-from ...core.serialization import FieldMetadata
-from .construe_cohort_response_queries_item import ConstrueCohortResponseQueriesItem
-
-
-class ConstrueCohortResponse(UniversalBaseModel):
-    queries: typing.Optional[typing.List[ConstrueCohortResponseQueriesItem]] = None
-    sql: typing.Optional[str] = pydantic.Field(default=None)
-    """
-    Generated SQL query when `sql_syntax` is specified. Variables in curly braces need to be replaced with your actual table names.
-    """
-
-    cohort_description: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="cohortDescription")] = (
-        pydantic.Field(default=None)
-    )
-    """
-    Echo of the input text description for reference.
-    """
-
-    if IS_PYDANTIC_V2:
-        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
-    else:
-
-        class Config:
-            frozen = True
-            smart_union = True
-            extra = pydantic.Extra.allow

phenoml/construe/types/construe_cohort_response_queries_item.py

@@ -1,49 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-import pydantic
-import typing_extensions
-from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
-from ...core.serialization import FieldMetadata
-from .construe_cohort_response_queries_item_code_extract_results_item import (
-    ConstrueCohortResponseQueriesItemCodeExtractResultsItem,
-)
-
-
-class ConstrueCohortResponseQueriesItem(UniversalBaseModel):
-    resource: typing.Optional[str] = pydantic.Field(default=None)
-    """
-    FHIR resource type (e.g., "Patient", "Condition").
-    """
-
-    search_params: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="searchParams")] = (
-        pydantic.Field(default=None)
-    )
-    """
-    FHIR search parameters.
-    """
-
-    exclude: typing.Optional[bool] = pydantic.Field(default=None)
-    """
-    Indicates if this is an exclusion criteria.
-    """
-
-    rationale: typing.Optional[str] = pydantic.Field(default=None)
-    """
-    AI-generated explanation for the query component.
-    """
-
-    code_extract_results: typing_extensions.Annotated[
-        typing.Optional[typing.List[ConstrueCohortResponseQueriesItemCodeExtractResultsItem]],
-        FieldMetadata(alias="codeExtractResults"),
-    ] = None
-
-    if IS_PYDANTIC_V2:
-        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
-    else:
-
-        class Config:
-            frozen = True
-            smart_union = True
-            extra = pydantic.Extra.allow

phenoml/construe/types/construe_cohort_response_queries_item_code_extract_results_item.py

@@ -1,31 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-import pydantic
-import typing_extensions
-from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
-from ...core.serialization import FieldMetadata
-from .construe_cohort_response_queries_item_code_extract_results_item_codes_item import (
-    ConstrueCohortResponseQueriesItemCodeExtractResultsItemCodesItem,
-)
-
-
-class ConstrueCohortResponseQueriesItemCodeExtractResultsItem(UniversalBaseModel):
-    system_name: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="systemName")] = pydantic.Field(
-        default=None
-    )
-    """
-    Name of the coding system (e.g., "SNOMED_CT_US_LITE").
-    """
-
-    codes: typing.Optional[typing.List[ConstrueCohortResponseQueriesItemCodeExtractResultsItemCodesItem]] = None
-
-    if IS_PYDANTIC_V2:
-        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
-    else:
-
-        class Config:
-            frozen = True
-            smart_union = True
-            extra = pydantic.Extra.allow

phenoml/tools/types/cohort_request_provider.py

@@ -1,5 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-CohortRequestProvider = typing.Union[typing.Literal["medplum", "google_healthcare", "canvas", "hapi"], typing.Any]

phenoml/tools/types/lang2fhir_and_create_request_provider.py

@@ -1,7 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-Lang2FhirAndCreateRequestProvider = typing.Union[
-    typing.Literal["medplum", "google_healthcare", "canvas", "hapi"], typing.Any
-]

phenoml/tools/types/lang2fhir_and_search_request_provider.py

@@ -1,7 +0,0 @@
-# This file was auto-generated by Fern from our API Definition.
-
-import typing
-
-Lang2FhirAndSearchRequestProvider = typing.Union[
-    typing.Literal["medplum", "google_healthcare", "canvas", "hapi"], typing.Any
-]