phenoml 0.0.2__py3-none-any.whl → 0.0.15__py3-none-any.whl

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Files changed (137) hide show
  1. phenoml/agent/__init__.py +6 -8
  2. phenoml/agent/client.py +85 -67
  3. phenoml/agent/raw_client.py +61 -77
  4. phenoml/agent/types/__init__.py +6 -8
  5. phenoml/agent/types/agent_create_request.py +53 -0
  6. phenoml/agent/types/agent_create_request_provider.py +5 -0
  7. phenoml/agent/types/agent_template.py +3 -6
  8. phenoml/agent/types/agent_template_provider.py +5 -0
  9. phenoml/agent/types/json_patch_operation.py +5 -1
  10. phenoml/client.py +12 -0
  11. phenoml/construe/__init__.py +2 -16
  12. phenoml/construe/client.py +0 -90
  13. phenoml/construe/raw_client.py +0 -180
  14. phenoml/construe/types/__init__.py +2 -20
  15. phenoml/construe/types/extract_request_config.py +33 -4
  16. phenoml/construe/types/extract_request_config_chunking_method.py +3 -1
  17. phenoml/construe/types/extract_request_config_validation_method.py +5 -0
  18. phenoml/construe/types/extract_request_system.py +2 -0
  19. phenoml/core/client_wrapper.py +2 -2
  20. phenoml/fhir/__init__.py +36 -0
  21. phenoml/fhir/client.py +1072 -0
  22. phenoml/fhir/errors/__init__.py +10 -0
  23. phenoml/fhir/errors/bad_request_error.py +10 -0
  24. phenoml/fhir/errors/internal_server_error.py +10 -0
  25. phenoml/fhir/errors/not_found_error.py +10 -0
  26. phenoml/fhir/errors/unauthorized_error.py +10 -0
  27. phenoml/fhir/raw_client.py +1469 -0
  28. phenoml/fhir/types/__init__.py +29 -0
  29. phenoml/{agent/types/chat_fhir_client_config.py → fhir/types/error_response.py} +11 -6
  30. phenoml/fhir/types/fhir_bundle.py +43 -0
  31. phenoml/fhir/types/fhir_bundle_entry_item.py +34 -0
  32. phenoml/fhir/types/fhir_bundle_entry_item_request.py +25 -0
  33. phenoml/fhir/types/fhir_bundle_entry_item_request_method.py +5 -0
  34. phenoml/{construe/types/bad_request_error_body.py → fhir/types/fhir_bundle_entry_item_response.py} +4 -7
  35. phenoml/fhir/types/fhir_patch_request_body_item.py +40 -0
  36. phenoml/fhir/types/fhir_patch_request_body_item_op.py +7 -0
  37. phenoml/fhir/types/fhir_resource.py +40 -0
  38. phenoml/fhir/types/fhir_resource_meta.py +28 -0
  39. phenoml/fhir/types/fhir_search_response.py +8 -0
  40. phenoml/fhir_provider/__init__.py +45 -0
  41. phenoml/fhir_provider/client.py +748 -0
  42. phenoml/fhir_provider/errors/__init__.py +11 -0
  43. phenoml/fhir_provider/errors/bad_request_error.py +10 -0
  44. phenoml/fhir_provider/errors/forbidden_error.py +10 -0
  45. phenoml/fhir_provider/errors/internal_server_error.py +10 -0
  46. phenoml/fhir_provider/errors/not_found_error.py +10 -0
  47. phenoml/fhir_provider/errors/unauthorized_error.py +10 -0
  48. phenoml/fhir_provider/raw_client.py +1462 -0
  49. phenoml/fhir_provider/types/__init__.py +37 -0
  50. phenoml/fhir_provider/types/auth_method.py +7 -0
  51. phenoml/fhir_provider/types/fhir_provider_auth_config.py +53 -0
  52. phenoml/fhir_provider/types/fhir_provider_delete_response.py +20 -0
  53. phenoml/fhir_provider/types/fhir_provider_list_response.py +22 -0
  54. phenoml/fhir_provider/types/fhir_provider_remove_auth_config_response.py +22 -0
  55. phenoml/fhir_provider/types/fhir_provider_response.py +22 -0
  56. phenoml/fhir_provider/types/fhir_provider_set_active_auth_config_response.py +22 -0
  57. phenoml/fhir_provider/types/fhir_provider_template.py +66 -0
  58. phenoml/fhir_provider/types/fhir_query_response.py +27 -0
  59. phenoml/fhir_provider/types/fhir_query_response_data.py +5 -0
  60. phenoml/fhir_provider/types/json_web_key.py +51 -0
  61. phenoml/fhir_provider/types/provider.py +8 -0
  62. phenoml/fhir_provider/types/role.py +27 -0
  63. phenoml/fhir_provider/types/service_account_key.py +35 -0
  64. phenoml/fhir_provider/types/smart_configuration.py +46 -0
  65. phenoml/summary/__init__.py +39 -0
  66. phenoml/summary/client.py +656 -0
  67. phenoml/summary/errors/__init__.py +11 -0
  68. phenoml/summary/errors/bad_request_error.py +10 -0
  69. phenoml/summary/errors/forbidden_error.py +10 -0
  70. phenoml/summary/errors/internal_server_error.py +10 -0
  71. phenoml/summary/errors/not_found_error.py +10 -0
  72. phenoml/summary/errors/unauthorized_error.py +10 -0
  73. phenoml/summary/raw_client.py +1190 -0
  74. phenoml/summary/types/__init__.py +31 -0
  75. phenoml/summary/types/create_summary_request_fhir_resources.py +8 -0
  76. phenoml/summary/types/create_summary_request_mode.py +5 -0
  77. phenoml/{agent/types/agent_fhir_config.py → summary/types/create_summary_response.py} +7 -9
  78. phenoml/summary/types/create_summary_template_response.py +23 -0
  79. phenoml/summary/types/fhir_bundle.py +23 -0
  80. phenoml/summary/types/fhir_bundle_entry_item.py +20 -0
  81. phenoml/summary/types/fhir_resource.py +24 -0
  82. phenoml/summary/types/summary_delete_template_response.py +20 -0
  83. phenoml/summary/types/summary_get_template_response.py +21 -0
  84. phenoml/summary/types/summary_list_templates_response.py +21 -0
  85. phenoml/summary/types/summary_template.py +41 -0
  86. phenoml/summary/types/summary_update_template_response.py +22 -0
  87. phenoml/tools/__init__.py +0 -8
  88. phenoml/tools/client.py +114 -44
  89. phenoml/tools/raw_client.py +86 -55
  90. phenoml/tools/types/__init__.py +0 -8
  91. phenoml/workflows/__init__.py +61 -0
  92. phenoml/workflows/client.py +694 -0
  93. phenoml/workflows/errors/__init__.py +11 -0
  94. phenoml/workflows/errors/bad_request_error.py +10 -0
  95. phenoml/workflows/errors/forbidden_error.py +10 -0
  96. phenoml/workflows/errors/internal_server_error.py +10 -0
  97. phenoml/workflows/errors/not_found_error.py +10 -0
  98. phenoml/workflows/errors/unauthorized_error.py +10 -0
  99. phenoml/workflows/raw_client.py +1266 -0
  100. phenoml/workflows/types/__init__.py +53 -0
  101. phenoml/workflows/types/create_workflow_request_fhir_provider_id.py +5 -0
  102. phenoml/workflows/types/create_workflow_response.py +44 -0
  103. phenoml/{tools/types/fhir_client_config.py → workflows/types/decision_node_definition.py} +7 -6
  104. phenoml/workflows/types/execute_workflow_response.py +30 -0
  105. phenoml/{construe/types/unauthorized_error_body.py → workflows/types/execute_workflow_response_results.py} +3 -8
  106. phenoml/workflows/types/lang2fhir_create_definition.py +37 -0
  107. phenoml/workflows/types/lang2fhir_search_definition.py +42 -0
  108. phenoml/workflows/types/list_workflows_response.py +39 -0
  109. phenoml/workflows/types/step_operation.py +26 -0
  110. phenoml/{construe/types/construe_cohort_response_queries_item_code_extract_results_item_codes_item.py → workflows/types/sub_workflow_definition.py} +7 -7
  111. phenoml/workflows/types/update_workflow_request_fhir_provider_id.py +5 -0
  112. phenoml/workflows/types/workflow_config.py +27 -0
  113. phenoml/workflows/types/workflow_definition.py +57 -0
  114. phenoml/{construe/types/internal_server_error_body.py → workflows/types/workflow_graph.py} +4 -8
  115. phenoml/workflows/types/workflow_response.py +61 -0
  116. phenoml/workflows/types/workflow_response_graph.py +23 -0
  117. phenoml/workflows/types/workflow_step.py +55 -0
  118. phenoml/workflows/types/workflow_step_summary.py +47 -0
  119. phenoml/workflows/types/workflow_step_summary_type.py +5 -0
  120. phenoml/workflows/types/workflow_step_type.py +5 -0
  121. phenoml/workflows/types/workflows_delete_response.py +20 -0
  122. phenoml/workflows/types/workflows_get_response.py +26 -0
  123. phenoml/workflows/types/workflows_update_response.py +31 -0
  124. phenoml-0.0.15.dist-info/LICENSE +21 -0
  125. {phenoml-0.0.2.dist-info → phenoml-0.0.15.dist-info}/METADATA +1 -1
  126. phenoml-0.0.15.dist-info/RECORD +242 -0
  127. phenoml/agent/types/agent_provider.py +0 -7
  128. phenoml/agent/types/provider_type.py +0 -5
  129. phenoml/construe/types/construe_cohort_request_config.py +0 -37
  130. phenoml/construe/types/construe_cohort_response.py +0 -33
  131. phenoml/construe/types/construe_cohort_response_queries_item.py +0 -49
  132. phenoml/construe/types/construe_cohort_response_queries_item_code_extract_results_item.py +0 -31
  133. phenoml/tools/types/cohort_request_provider.py +0 -5
  134. phenoml/tools/types/lang2fhir_and_create_request_provider.py +0 -7
  135. phenoml/tools/types/lang2fhir_and_search_request_provider.py +0 -7
  136. phenoml-0.0.2.dist-info/RECORD +0 -153
  137. {phenoml-0.0.2.dist-info → phenoml-0.0.15.dist-info}/WHEEL +0 -0
phenoml/tools/types/__init__.py CHANGED
@@ -2,13 +2,9 @@
2
2
 
3
3
  # isort: skip_file
4
4
 
5
- from .cohort_request_provider import CohortRequestProvider
6
5
  from .cohort_response import CohortResponse
7
- from .fhir_client_config import FhirClientConfig
8
- from .lang2fhir_and_create_request_provider import Lang2FhirAndCreateRequestProvider
9
6
  from .lang2fhir_and_create_request_resource import Lang2FhirAndCreateRequestResource
10
7
  from .lang2fhir_and_create_response import Lang2FhirAndCreateResponse
11
- from .lang2fhir_and_search_request_provider import Lang2FhirAndSearchRequestProvider
12
8
  from .lang2fhir_and_search_response import Lang2FhirAndSearchResponse
13
9
  from .mcp_server_response import McpServerResponse
14
10
  from .mcp_server_response_data import McpServerResponseData
@@ -18,13 +14,9 @@ from .mcp_server_tool_response_data import McpServerToolResponseData
18
14
  from .search_concept import SearchConcept
19
15
 
20
16
  __all__ = [
21
- "CohortRequestProvider",
22
17
  "CohortResponse",
23
- "FhirClientConfig",
24
- "Lang2FhirAndCreateRequestProvider",
25
18
  "Lang2FhirAndCreateRequestResource",
26
19
  "Lang2FhirAndCreateResponse",
27
- "Lang2FhirAndSearchRequestProvider",
28
20
  "Lang2FhirAndSearchResponse",
29
21
  "McpServerResponse",
30
22
  "McpServerResponseData",
phenoml/workflows/__init__.py ADDED
@@ -0,0 +1,61 @@
1
+ # This file was auto-generated by Fern from our API Definition.
2
+
3
+ # isort: skip_file
4
+
5
+ from .types import (
6
+ CreateWorkflowRequestFhirProviderId,
7
+ CreateWorkflowResponse,
8
+ DecisionNodeDefinition,
9
+ ExecuteWorkflowResponse,
10
+ ExecuteWorkflowResponseResults,
11
+ Lang2FhirCreateDefinition,
12
+ Lang2FhirSearchDefinition,
13
+ ListWorkflowsResponse,
14
+ StepOperation,
15
+ SubWorkflowDefinition,
16
+ UpdateWorkflowRequestFhirProviderId,
17
+ WorkflowConfig,
18
+ WorkflowDefinition,
19
+ WorkflowGraph,
20
+ WorkflowResponse,
21
+ WorkflowResponseGraph,
22
+ WorkflowStep,
23
+ WorkflowStepSummary,
24
+ WorkflowStepSummaryType,
25
+ WorkflowStepType,
26
+ WorkflowsDeleteResponse,
27
+ WorkflowsGetResponse,
28
+ WorkflowsUpdateResponse,
29
+ )
30
+ from .errors import BadRequestError, ForbiddenError, InternalServerError, NotFoundError, UnauthorizedError
31
+
32
+ __all__ = [
33
+ "BadRequestError",
34
+ "CreateWorkflowRequestFhirProviderId",
35
+ "CreateWorkflowResponse",
36
+ "DecisionNodeDefinition",
37
+ "ExecuteWorkflowResponse",
38
+ "ExecuteWorkflowResponseResults",
39
+ "ForbiddenError",
40
+ "InternalServerError",
41
+ "Lang2FhirCreateDefinition",
42
+ "Lang2FhirSearchDefinition",
43
+ "ListWorkflowsResponse",
44
+ "NotFoundError",
45
+ "StepOperation",
46
+ "SubWorkflowDefinition",
47
+ "UnauthorizedError",
48
+ "UpdateWorkflowRequestFhirProviderId",
49
+ "WorkflowConfig",
50
+ "WorkflowDefinition",
51
+ "WorkflowGraph",
52
+ "WorkflowResponse",
53
+ "WorkflowResponseGraph",
54
+ "WorkflowStep",
55
+ "WorkflowStepSummary",
56
+ "WorkflowStepSummaryType",
57
+ "WorkflowStepType",
58
+ "WorkflowsDeleteResponse",
59
+ "WorkflowsGetResponse",
60
+ "WorkflowsUpdateResponse",
61
+ ]