phasorpy 0.7__cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl

phasorpy/component.py

@@ -0,0 +1,707 @@
+"""Component analysis of phasor coordinates.
+
+The ``phasorpy.component`` module provides functions to:
+
+- calculate fractions of two known components by projecting onto the
+  line between the components (:py:func:`phasor_component_fraction`)
+
+- calculate phasor coordinates of second component if only one is
+  known (not implemented)
+
+- calculate fractions of multiple known components by using higher
+  harmonic information (:py:func:`phasor_component_fit`)
+
+- calculate fractions of two or three known components by resolving
+  graphically with histogram (:py:func:`phasor_component_graphical`)
+
+- calculate mean value coordinates of phasor coordinates with respect
+  to three or more components (:py:func:`phasor_component_mvc`)
+
+- blindly resolve fractions of multiple components by using harmonic
+  information (:py:func:`phasor_component_blind`, not implemented)
+
+- calculate phasor coordinates from fractional intensities of
+  components (:py:func:`phasor_from_component`)
+
+"""
+
+from __future__ import annotations
+
+__all__ = [
+    # phasor_component_blind,
+    'phasor_component_fit',
+    'phasor_component_fraction',
+    'phasor_component_graphical',
+    'phasor_component_mvc',
+    'phasor_from_component',
+]
+
+import numbers
+from typing import TYPE_CHECKING
+
+if TYPE_CHECKING:
+    from ._typing import Any, ArrayLike, DTypeLike, NDArray
+
+import numpy
+
+from ._phasorpy import (
+    _blend_and,
+    _fraction_on_segment,
+    _is_inside_circle,
+    _is_inside_stadium,
+    _mean_value_coordinates,
+    _segment_direction_and_length,
+)
+from ._utils import sort_coordinates
+from .phasor import phasor_threshold
+from .utils import number_threads
+
+
+def phasor_from_component(
+    component_real: ArrayLike,
+    component_imag: ArrayLike,
+    fraction: ArrayLike,
+    /,
+    axis: int = 0,
+    dtype: DTypeLike | None = None,
+) -> tuple[NDArray[Any], NDArray[Any]]:
+    """Return phasor coordinates from fractional intensities of components.
+
+    Return the dot products of the fractional intensities of components
+    with the real and imaginary phasor coordinates of the components.
+
+    Multi-dimensional component arrays are currently not supported.
+
+    Parameters
+    ----------
+    component_real : array_like, shape (n,)
+        Real coordinates of components.
+        At least two components are required.
+    component_imag : array_like, shape (n,)
+        Imaginary coordinates of components.
+    fraction : array_like
+        Fractional intensities of components.
+        Fractions are normalized to sum to one along `axis`.
+    axis : int, optional, default: 0
+        Axis of components in `fraction`.
+    dtype : dtype_like, optional
+        Floating point data type used for calculation and output values.
+        Either `float32` or `float64`. The default is `float64`.
+
+    Returns
+    -------
+    real : ndarray
+        Real component of phasor coordinates.
+    imag : ndarray
+        Imaginary component of phasor coordinates.
+
+    Examples
+    --------
+    Calculate phasor coordinates from two components and their fractional
+    intensities:
+
+    >>> phasor_from_component(
+    ...     [0.6, 0.4], [0.3, 0.2], [[1.0, 0.2, 0.9], [0.0, 0.8, 0.1]]
+    ... )
+    (array([0.6, 0.44, 0.58]), array([0.3, 0.22, 0.29]))
+
+    """
+    dtype = numpy.dtype(dtype)
+    if dtype.char not in {'f', 'd'}:
+        raise ValueError(f'{dtype=} is not a floating point type')
+
+    fraction = numpy.array(fraction, dtype=dtype, copy=True)
+    if fraction.ndim < 1:
+        raise ValueError(f'{fraction.ndim=} < 1')
+    if fraction.shape[axis] < 2:
+        raise ValueError(f'{fraction.shape[axis]=} < 2')
+    with numpy.errstate(divide='ignore', invalid='ignore'):
+        fraction /= fraction.sum(axis=axis, keepdims=True)
+
+    component_real = numpy.asarray(component_real, dtype=dtype)
+    component_imag = numpy.asarray(component_imag, dtype=dtype)
+    if component_real.shape != component_imag.shape:
+        raise ValueError(f'{component_real.shape=} != {component_imag.shape=}')
+    if component_real.ndim != 1:
+        raise ValueError(f'{component_real.ndim=} != 1')
+    if component_real.size != fraction.shape[axis]:
+        raise ValueError(f'{component_real.size=} != {fraction.shape[axis]=}')
+
+    fraction = numpy.moveaxis(fraction, axis, -1)
+    real = numpy.dot(fraction, component_real)
+    imag = numpy.dot(fraction, component_imag)
+    return real, imag
+
+
+def phasor_component_fraction(
+    real: ArrayLike,
+    imag: ArrayLike,
+    component_real: ArrayLike,
+    component_imag: ArrayLike,
+    /,
+) -> NDArray[Any]:
+    """Return fraction of first of two components from phasor coordinates.
+
+    Return the relative distance (normalized by the distance between the two
+    components) to the second component for each phasor coordinate projected
+    onto the line between two components.
+
+    Parameters
+    ----------
+    real : array_like
+        Real component of phasor coordinates.
+    imag : array_like
+        Imaginary component of phasor coordinates.
+    component_real : array_like, shape (2,)
+        Real coordinates of first and second components.
+    component_imag : array_like, shape (2,)
+        Imaginary coordinates of first and second components.
+
+    Returns
+    -------
+    fraction : ndarray
+        Fractions of first component.
+
+    Raises
+    ------
+    ValueError
+        If the real or imaginary coordinates of the known components are
+        not of size 2.
+
+    See Also
+    --------
+    :ref:`sphx_glr_tutorials_api_phasorpy_component.py`
+
+    Notes
+    -----
+    The fraction of the second component is ``1.0 - fraction``.
+
+    For now, calculation of fraction of components from different
+    channels or frequencies is not supported. Only one pair of components can
+    be analyzed and will be broadcast to all channels/frequencies.
+
+    Examples
+    --------
+    >>> phasor_component_fraction(
+    ...     [0.6, 0.5, 0.4], [0.4, 0.3, 0.2], [0.2, 0.9], [0.4, 0.3]
+    ... )
+    array([0.44, 0.56, 0.68])
+
+    """
+    component_real = numpy.asarray(component_real)
+    component_imag = numpy.asarray(component_imag)
+    if component_real.shape != (2,):
+        raise ValueError(f'{component_real.shape=} != (2,)')
+    if component_imag.shape != (2,):
+        raise ValueError(f'{component_imag.shape=} != (2,)')
+    if (
+        component_real[0] == component_real[1]
+        and component_imag[0] == component_imag[1]
+    ):
+        raise ValueError('components must have different coordinates')
+
+    return _fraction_on_segment(  # type: ignore[no-any-return]
+        real,
+        imag,
+        component_real[0],
+        component_imag[0],
+        component_real[1],
+        component_imag[1],
+    )
+
+
+def phasor_component_graphical(
+    real: ArrayLike,
+    imag: ArrayLike,
+    component_real: ArrayLike,
+    component_imag: ArrayLike,
+    /,
+    *,
+    radius: float = 0.05,
+    fractions: ArrayLike | None = None,
+) -> NDArray[Any]:
+    r"""Return fractions of two or three components from phasor coordinates.
+
+    The graphical method is based on moving circular cursors along the line
+    between pairs of components and quantifying the phasors for each
+    fraction.
+
+    Parameters
+    ----------
+    real : array_like
+        Real component of phasor coordinates.
+    imag : array_like
+        Imaginary component of phasor coordinates.
+    component_real : array_like, shape (2,) or (3,)
+        Real coordinates for two or three components.
+    component_imag : array_like, shape (2,) or (3,)
+        Imaginary coordinates for two or three components.
+    radius : float, optional, default: 0.05
+        Radius of cursor.
+    fractions : array_like or int, optional
+        Number of equidistant fractions, or 1D array of fraction values.
+        Fraction values must be in range [0.0, 1.0].
+        If an integer, ``numpy.linspace(0.0, 1.0, fractions)`` fraction values
+        are used.
+        If None (default), the number of fractions is determined from the
+        longest distance between any pair of components and the radius of
+        the cursor (see Notes below).
+
+    Returns
+    -------
+    counts : ndarray
+        Counts along each line segment connecting components.
+        Ordered 0-1 (2 components) or 0-1, 0-2, 1-2 (3 components).
+        Shaped `(number fractions,)` (2 components) or
+        `(3, number fractions)` (3 components).
+
+    Raises
+    ------
+    ValueError
+        The array shapes of `real` and `imag`, or `component_real` and
+        `component_imag` do not match.
+        The number of components is not 2 or 3.
+        Fraction values are out of range [0.0, 1.0].
+
+    See Also
+    --------
+    :ref:`sphx_glr_tutorials_api_phasorpy_component.py`
+
+    Notes
+    -----
+    For now, calculation of fraction of components from different
+    channels or frequencies is not supported. Only one set of components can
+    be analyzed and will be broadcast to all channels/frequencies.
+
+    The graphical method was first introduced in [1]_.
+
+    If no `fractions` are provided, the number of fractions (:math:`N`) used
+    is determined from the longest distance between any pair of components
+    (:math:`D`) and the radius of the cursor (:math:`R`):
+
+    .. math::
+
+        N = \frac{2 \cdot D}{R} + 1
+
+    The fractions can be retrieved by:
+
+    .. code-block:: python
+
+        fractions = numpy.linspace(0.0, 1.0, len(counts[0]))
+
+    References
+    ----------
+    .. [1] Ranjit S, Datta R, Dvornikov A, and Gratton E.
+      `Multicomponent analysis of phasor plot in a single pixel to
+      calculate changes of metabolic trajectory in biological systems
+      <https://doi.org/10.1021/acs.jpca.9b07880>`_.
+      *J Phys Chem A*, 123(45): 9865-9873 (2019)
+
+    Examples
+    --------
+    Count the number of phasors between two components:
+
+    >>> phasor_component_graphical(
+    ...     [0.6, 0.3], [0.35, 0.38], [0.2, 0.9], [0.4, 0.3], fractions=6
+    ... )
+    array([0, 0, 1, 0, 1, 0], dtype=uint8)
+
+    Count the number of phasors between the combinations of three components:
+
+    >>> phasor_component_graphical(
+    ...     [0.4, 0.5],
+    ...     [0.2, 0.3],
+    ...     [0.0, 0.2, 0.9],
+    ...     [0.0, 0.4, 0.3],
+    ...     fractions=6,
+    ... )
+    array([[0, 1, 1, 1, 1, 0],
+           [0, 1, 0, 0, 0, 0],
+           [0, 1, 2, 0, 0, 0]], dtype=uint8)
+
+    """
+    real = numpy.asarray(real)
+    imag = numpy.asarray(imag)
+    component_real = numpy.asarray(component_real)
+    component_imag = numpy.asarray(component_imag)
+    if (
+        real.shape != imag.shape
+        or component_real.shape != component_imag.shape
+    ):
+        raise ValueError('input array shapes must match')
+    if component_real.ndim != 1:
+        raise ValueError(
+            'component arrays are not one-dimensional: '
+            f'{component_real.ndim} dimensions found'
+        )
+    num_components = len(component_real)
+    if num_components not in {2, 3}:
+        raise ValueError('number of components must be 2 or 3')
+
+    if fractions is None:
+        longest_distance = 0
+        for i in range(num_components):
+            a_real = component_real[i]
+            a_imag = component_imag[i]
+            for j in range(i + 1, num_components):
+                b_real = component_real[j]
+                b_imag = component_imag[j]
+                _, _, length = _segment_direction_and_length(
+                    a_real, a_imag, b_real, b_imag
+                )
+                longest_distance = max(longest_distance, length)
+        fractions = numpy.linspace(
+            0.0, 1.0, int(round(longest_distance / (radius / 2) + 1))
+        )
+    elif isinstance(fractions, (int, numbers.Integral)):
+        fractions = numpy.linspace(0.0, 1.0, fractions)
+    else:
+        fractions = numpy.asarray(fractions)
+        if fractions.ndim != 1:
+            raise ValueError('fractions is not a one-dimensional array')
+
+    dtype = numpy.min_scalar_type(real.size)
+    counts = numpy.empty(
+        (1 if num_components == 2 else 3, fractions.size), dtype
+    )
+
+    c = 0
+    for i in range(num_components):
+        a_real = component_real[i]
+        a_imag = component_imag[i]
+        for j in range(i + 1, num_components):
+            b_real = component_real[j]
+            b_imag = component_imag[j]
+            ab_real = a_real - b_real
+            ab_imag = a_imag - b_imag
+
+            for k, f in enumerate(fractions):
+                if f < 0.0 or f > 1.0:
+                    raise ValueError(f'fraction {f} out of bounds [0.0, 1.0]')
+                if num_components == 2:
+                    mask = _is_inside_circle(
+                        real,
+                        imag,
+                        b_real + f * ab_real,  # cursor_real
+                        b_imag + f * ab_imag,  # cursor_imag
+                        radius,
+                    )
+                else:
+                    # num_components == 3
+                    mask = _is_inside_stadium(
+                        real,
+                        imag,
+                        b_real + f * ab_real,  # cursor_real
+                        b_imag + f * ab_imag,  # cursor_imag
+                        component_real[3 - i - j],  # c_real
+                        component_imag[3 - i - j],  # c_imag
+                        radius,
+                    )
+                counts[c, k] = numpy.sum(mask, dtype=dtype)
+            c += 1
+
+    return counts[0] if num_components == 2 else counts
+
+
+def phasor_component_fit(
+    mean: ArrayLike,
+    real: ArrayLike,
+    imag: ArrayLike,
+    component_real: ArrayLike,
+    component_imag: ArrayLike,
+    /,
+    **kwargs: Any,
+) -> NDArray[Any]:
+    """Return fractions of multiple components from phasor coordinates.
+
+    Component fractions are obtained from the least-squares solution of a
+    linear matrix equation that relates phasor coordinates from one or
+    multiple harmonics to component fractions according to [2]_.
+
+    Up to ``2 * number harmonics + 1`` components can be fit to multi-harmonic
+    phasor coordinates, that is up to three components for single harmonic
+    phasor coordinates.
+
+    Parameters
+    ----------
+    mean : array_like
+        Intensity of phasor coordinates.
+    real : array_like
+        Real component of phasor coordinates.
+        Harmonics, if any, must be in the first dimension.
+    imag : array_like
+        Imaginary component of phasor coordinates.
+        Harmonics, if any, must be in the first dimension.
+    component_real : array_like
+        Real coordinates of components.
+        Must be one or two-dimensional with harmonics in the first dimension.
+    component_imag : array_like
+        Imaginary coordinates of components.
+        Must be one or two-dimensional with harmonics in the first dimension.
+    **kwargs : optional
+        Additional arguments passed to :py:func:`scipy.linalg.lstsq()`.
+
+    Returns
+    -------
+    fractions : ndarray
+        Component fractions.
+        Fractions may not exactly add up to 1.0.
+
+    Raises
+    ------
+    ValueError
+        The array shapes of `real` and `imag` do not match.
+        The array shapes of `component_real` and `component_imag` do not match.
+        The number of harmonics in the components does not
+        match the ones in the phasor coordinates.
+        The system is underdetermined; the component matrix having more
+        columns than rows.
+
+    See Also
+    --------
+    :ref:`sphx_glr_tutorials_api_phasorpy_component.py`
+    :ref:`sphx_glr_tutorials_applications_phasorpy_component_fit.py`
+
+    Notes
+    -----
+    For now, calculation of fractions of components from different channels
+    or frequencies is not supported. Only one set of components can be
+    analyzed and is broadcast to all channels/frequencies.
+
+    The method builds a linear matrix equation,
+    :math:`A\\mathbf{x} = \\mathbf{b}`, where :math:`A` consists of the
+    phasor coordinates of individual components, :math:`\\mathbf{x}` are
+    the unknown fractions, and :math:`\\mathbf{b}` represents the measured
+    phasor coordinates in the mixture. The least-squares solution of this
+    linear matrix equation yields the fractions.
+
+    References
+    ----------
+    .. [2] Vallmitjana A, Lepanto P, Irigoin F, and Malacrida L.
+      `Phasor-based multi-harmonic unmixing for in-vivo hyperspectral
+      imaging <https://doi.org/10.1088/2050-6120/ac9ae9>`_.
+      *Methods Appl Fluoresc*, 11(1): 014001 (2022)
+
+    Examples
+    --------
+    >>> phasor_component_fit(
+    ...     [1, 1, 1], [0.6, 0.5, 0.4], [0.4, 0.3, 0.2], [0.2, 0.9], [0.4, 0.3]
+    ... )
+    array([[0.4644, 0.5356, 0.6068],
+           [0.5559, 0.4441, 0.3322]])
+
+    """
+    from scipy.linalg import lstsq
+
+    mean = numpy.atleast_1d(mean)
+    real = numpy.atleast_1d(real)
+    imag = numpy.atleast_1d(imag)
+    component_real = numpy.atleast_1d(component_real)
+    component_imag = numpy.atleast_1d(component_imag)
+
+    if real.shape != imag.shape:
+        raise ValueError(f'{real.shape=} != {imag.shape=}')
+    if mean.shape != real.shape[-mean.ndim :]:
+        raise ValueError(f'{mean.shape=} does not match {real.shape=}')
+
+    if component_real.shape != component_imag.shape:
+        raise ValueError(f'{component_real.shape=} != {component_imag.shape=}')
+    if numpy.isnan(component_real).any() or numpy.isnan(component_imag).any():
+        raise ValueError(
+            'component phasor coordinates must not contain NaN values'
+        )
+    if numpy.isinf(component_real).any() or numpy.isinf(component_imag).any():
+        raise ValueError(
+            'component phasor coordinates must not contain infinite values'
+        )
+
+    if component_real.ndim == 1:
+        component_real = component_real.reshape(1, -1)
+        component_imag = component_imag.reshape(1, -1)
+    elif component_real.ndim > 2:
+        raise ValueError(f'{component_real.ndim=} > 2')
+
+    num_harmonics, num_components = component_real.shape
+
+    # create component matrix for least squares solving:
+    # [real coordinates of components (for each harmonic)] +
+    # [imaginary coordinates of components (for each harmonic)] +
+    # [ones for intensity constraint]
+    component_matrix = numpy.ones((2 * num_harmonics + 1, num_components))
+    component_matrix[:num_harmonics] = component_real
+    component_matrix[num_harmonics : 2 * num_harmonics] = component_imag
+
+    if component_matrix.shape[0] < component_matrix.shape[1]:
+        raise ValueError(
+            'the system is undetermined '
+            f'({num_components=} > {num_harmonics * 2 + 1=})'
+        )
+
+    has_harmonic_axis = mean.ndim + 1 == real.ndim
+    if not has_harmonic_axis:
+        real = numpy.expand_dims(real, axis=0)
+        imag = numpy.expand_dims(imag, axis=0)
+    elif real.shape[0] != num_harmonics:
+        raise ValueError(f'{real.shape[0]=} != {component_real.shape[0]=}')
+
+    # TODO: replace Inf with NaN values?
+    mean, real, imag = phasor_threshold(mean, real, imag)
+
+    # replace NaN values with 0.0 for least squares solving
+    real = numpy.nan_to_num(real, nan=0.0, copy=False)
+    imag = numpy.nan_to_num(imag, nan=0.0, copy=False)
+
+    # create coordinates matrix for least squares solving:
+    # [real coordinates (for each harmonic)] +
+    # [imaginary coordinates (for each harmonic)] +
+    # [ones for intensity constraint]
+    coords = numpy.ones(
+        (2 * num_harmonics + 1,) + real.shape[1:]  # type: ignore[union-attr]
+    )
+    coords[:num_harmonics] = real
+    coords[num_harmonics : 2 * num_harmonics] = imag
+
+    fractions = lstsq(
+        component_matrix, coords.reshape(coords.shape[0], -1), **kwargs
+    )[0]
+
+    # reshape to match input dimensions
+    fractions = fractions.reshape((num_components,) + coords.shape[1:])
+
+    # TODO: normalize fractions to sum up to 1.0?
+    # fractions /= numpy.sum(fractions, axis=0, keepdims=True)
+
+    # restore NaN values in fractions from mean
+    _blend_and(mean, fractions, out=fractions)
+
+    return numpy.asarray(fractions)
+
+
+def phasor_component_mvc(
+    real: ArrayLike,
+    imag: ArrayLike,
+    component_real: ArrayLike,
+    component_imag: ArrayLike,
+    /,
+    *,
+    dtype: DTypeLike = None,
+    num_threads: int | None = None,
+) -> NDArray[Any]:
+    """Return mean value coordinates of phasor coordinates from components.
+
+    The mean value coordinates of phasor coordinates with respect to three or
+    more components spanning an arbitrary simple polygon are computed using
+    the stable method described in [3]_.
+    For three components, mean value coordinates are equivalent to
+    barycentric coordinates.
+
+    Parameters
+    ----------
+    real : array_like
+        Real component of phasor coordinates.
+    imag : array_like
+        Imaginary component of phasor coordinates.
+    component_real : array_like
+        Real coordinates of at least three components.
+    component_imag : array_like
+        Imaginary coordinates of at least three components.
+    dtype : dtype_like, optional
+        Floating point data type used for calculation and output values.
+        Either `float32` or `float64`. The default is `float64`.
+    num_threads : int, optional
+        Number of OpenMP threads to use for parallelization.
+        By default, multi-threading is disabled.
+        If zero, up to half of logical CPUs are used.
+        OpenMP may not be available on all platforms.
+
+    Returns
+    -------
+    fractions : ndarray
+        Mean value coordinates for each phasor coordinate.
+
+    Raises
+    ------
+    ValueError
+        The array shapes of `real` and `imag` do not match.
+        The array shapes of `component_real` and `component_imag` do not match.
+
+    Notes
+    -----
+    Calculation of mean value coordinates for different channels,
+    frequencies, or harmonics is not supported. Only one set of components
+    can be analyzed and is broadcast to all channels/frequencies/harmonics.
+
+    For three components, this function returns the same result as
+    :py:func:`phasor_component_fit`. For more than three components,
+    the system is underdetermined and the mean value coordinates represent
+    one of multiple solutions. However, the special properties of the mean
+    value coordinates make them particularly useful for interpolating and
+    visualizing multi-component data.
+
+    References
+    ----------
+    .. [3] Fuda C and Hormann K.
+      `A new stable method to compute mean value coordinates
+      <https://doi.org/10.1016/j.cagd.2024.102310>`_.
+      *Computer Aided Geometric Design*, 111: 102310 (2024)
+
+    Examples
+    --------
+    Calculate the barycentric coordinates of a phasor coordinate
+    in a triangle defined by three components:
+
+    >>> phasor_component_mvc(0.6, 0.3, [0.0, 1.0, 0.0], [1.0, 0.0, 0.0])
+    array([0.3, 0.6, 0.1])
+
+    The barycentric coordinates of phasor coordinates outside the polygon
+    defined by the components may be outside the range [0.0, 1.0]:
+
+    >>> phasor_component_mvc(0.6, 0.6, [0.0, 1.0, 0.0], [1.0, 0.0, 0.0])
+    array([0.6, 0.6, -0.2])
+
+    """
+    num_threads = number_threads(num_threads)
+
+    dtype = numpy.dtype(dtype)
+    if dtype.char not in {'f', 'd'}:
+        raise ValueError(f'{dtype=} is not a floating point type')
+
+    real = numpy.ascontiguousarray(real, dtype=dtype)
+    imag = numpy.ascontiguousarray(imag, dtype=dtype)
+    component_real = numpy.ascontiguousarray(component_real, dtype=dtype)
+    component_imag = numpy.ascontiguousarray(component_imag, dtype=dtype)
+
+    if real.shape != imag.shape:
+        raise ValueError(f'{real.shape=} != {imag.shape=}')
+    if component_real.shape != component_imag.shape:
+        raise ValueError(f'{component_real.shape=} != {component_imag.shape=}')
+    if component_real.ndim != 1 or component_real.size < 3:
+        raise ValueError('number of components must be three or more')
+    if numpy.isnan(component_real).any() or numpy.isnan(component_imag).any():
+        raise ValueError('component coordinates must not contain NaN values')
+    if numpy.isinf(component_real).any() or numpy.isinf(component_imag).any():
+        raise ValueError(
+            'component coordinates must not contain infinite values'
+        )
+
+    # TODO:: sorting not strictly required for three components?
+    component_real, component_imag, indices = sort_coordinates(
+        component_real, component_imag
+    )
+
+    shape = real.shape
+    real = real.reshape(-1)
+    imag = imag.reshape(-1)
+    fraction = numpy.zeros((component_real.size, real.size), dtype=dtype)
+
+    _mean_value_coordinates(
+        fraction,
+        indices,
+        real,
+        imag,
+        component_real,
+        component_imag,
+        num_threads,
+    )
+
+    return numpy.asarray(fraction.reshape((-1, *shape)).squeeze())