pg-sui 1.0.2.1__py3-none-any.whl → 1.6.8__py3-none-any.whl

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Files changed (112) hide show
  1. {pg_sui-1.0.2.1.dist-info → pg_sui-1.6.8.dist-info}/METADATA +51 -70
  2. pg_sui-1.6.8.dist-info/RECORD +78 -0
  3. {pg_sui-1.0.2.1.dist-info → pg_sui-1.6.8.dist-info}/WHEEL +1 -1
  4. pg_sui-1.6.8.dist-info/entry_points.txt +4 -0
  5. pg_sui-1.6.8.dist-info/top_level.txt +1 -0
  6. pgsui/__init__.py +35 -54
  7. pgsui/_version.py +34 -0
  8. pgsui/cli.py +635 -0
  9. pgsui/data_processing/config.py +576 -0
  10. pgsui/data_processing/containers.py +1782 -0
  11. pgsui/data_processing/transformers.py +121 -1103
  12. pgsui/electron/app/__main__.py +5 -0
  13. pgsui/electron/app/icons/icons/1024x1024.png +0 -0
  14. pgsui/electron/app/icons/icons/128x128.png +0 -0
  15. pgsui/electron/app/icons/icons/16x16.png +0 -0
  16. pgsui/electron/app/icons/icons/24x24.png +0 -0
  17. pgsui/electron/app/icons/icons/256x256.png +0 -0
  18. pgsui/electron/app/icons/icons/32x32.png +0 -0
  19. pgsui/electron/app/icons/icons/48x48.png +0 -0
  20. pgsui/electron/app/icons/icons/512x512.png +0 -0
  21. pgsui/electron/app/icons/icons/64x64.png +0 -0
  22. pgsui/electron/app/icons/icons/icon.icns +0 -0
  23. pgsui/electron/app/icons/icons/icon.ico +0 -0
  24. pgsui/electron/app/main.js +189 -0
  25. pgsui/electron/app/package-lock.json +6893 -0
  26. pgsui/electron/app/package.json +50 -0
  27. pgsui/electron/app/preload.js +15 -0
  28. pgsui/electron/app/server.py +146 -0
  29. pgsui/electron/app/ui/logo.png +0 -0
  30. pgsui/electron/app/ui/renderer.js +130 -0
  31. pgsui/electron/app/ui/styles.css +59 -0
  32. pgsui/electron/app/ui/ui_shim.js +72 -0
  33. pgsui/electron/bootstrap.py +43 -0
  34. pgsui/electron/launch.py +59 -0
  35. pgsui/electron/package.json +14 -0
  36. pgsui/example_data/popmaps/{test.popmap → phylogen_nomx.popmap} +185 -99
  37. pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz +0 -0
  38. pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz.tbi +0 -0
  39. pgsui/impute/deterministic/imputers/allele_freq.py +691 -0
  40. pgsui/impute/deterministic/imputers/mode.py +679 -0
  41. pgsui/impute/deterministic/imputers/nmf.py +221 -0
  42. pgsui/impute/deterministic/imputers/phylo.py +971 -0
  43. pgsui/impute/deterministic/imputers/ref_allele.py +530 -0
  44. pgsui/impute/supervised/base.py +339 -0
  45. pgsui/impute/supervised/imputers/hist_gradient_boosting.py +293 -0
  46. pgsui/impute/supervised/imputers/random_forest.py +287 -0
  47. pgsui/impute/unsupervised/base.py +924 -0
  48. pgsui/impute/unsupervised/callbacks.py +89 -263
  49. pgsui/impute/unsupervised/imputers/autoencoder.py +972 -0
  50. pgsui/impute/unsupervised/imputers/nlpca.py +1264 -0
  51. pgsui/impute/unsupervised/imputers/ubp.py +1288 -0
  52. pgsui/impute/unsupervised/imputers/vae.py +957 -0
  53. pgsui/impute/unsupervised/loss_functions.py +158 -0
  54. pgsui/impute/unsupervised/models/autoencoder_model.py +208 -558
  55. pgsui/impute/unsupervised/models/nlpca_model.py +149 -468
  56. pgsui/impute/unsupervised/models/ubp_model.py +198 -1317
  57. pgsui/impute/unsupervised/models/vae_model.py +259 -618
  58. pgsui/impute/unsupervised/nn_scorers.py +215 -0
  59. pgsui/utils/classification_viz.py +591 -0
  60. pgsui/utils/misc.py +35 -480
  61. pgsui/utils/plotting.py +514 -824
  62. pgsui/utils/scorers.py +212 -438
  63. pg_sui-1.0.2.1.dist-info/RECORD +0 -75
  64. pg_sui-1.0.2.1.dist-info/top_level.txt +0 -3
  65. pgsui/example_data/phylip_files/test_n10.phy +0 -118
  66. pgsui/example_data/phylip_files/test_n100.phy +0 -118
  67. pgsui/example_data/phylip_files/test_n2.phy +0 -118
  68. pgsui/example_data/phylip_files/test_n500.phy +0 -118
  69. pgsui/example_data/structure_files/test.nopops.1row.10sites.str +0 -117
  70. pgsui/example_data/structure_files/test.nopops.2row.100sites.str +0 -234
  71. pgsui/example_data/structure_files/test.nopops.2row.10sites.str +0 -234
  72. pgsui/example_data/structure_files/test.nopops.2row.30sites.str +0 -234
  73. pgsui/example_data/structure_files/test.nopops.2row.allsites.str +0 -234
  74. pgsui/example_data/structure_files/test.pops.1row.10sites.str +0 -117
  75. pgsui/example_data/structure_files/test.pops.2row.10sites.str +0 -234
  76. pgsui/example_data/trees/test.iqtree +0 -376
  77. pgsui/example_data/trees/test.qmat +0 -5
  78. pgsui/example_data/trees/test.rate +0 -2033
  79. pgsui/example_data/trees/test.tre +0 -1
  80. pgsui/example_data/trees/test_n10.rate +0 -19
  81. pgsui/example_data/trees/test_n100.rate +0 -109
  82. pgsui/example_data/trees/test_n500.rate +0 -509
  83. pgsui/example_data/trees/test_siterates.txt +0 -2024
  84. pgsui/example_data/trees/test_siterates_n10.txt +0 -10
  85. pgsui/example_data/trees/test_siterates_n100.txt +0 -100
  86. pgsui/example_data/trees/test_siterates_n500.txt +0 -500
  87. pgsui/example_data/vcf_files/test.vcf +0 -244
  88. pgsui/example_data/vcf_files/test.vcf.gz +0 -0
  89. pgsui/example_data/vcf_files/test.vcf.gz.tbi +0 -0
  90. pgsui/impute/estimators.py +0 -735
  91. pgsui/impute/impute.py +0 -1486
  92. pgsui/impute/simple_imputers.py +0 -1439
  93. pgsui/impute/supervised/iterative_imputer_fixedparams.py +0 -785
  94. pgsui/impute/supervised/iterative_imputer_gridsearch.py +0 -1027
  95. pgsui/impute/unsupervised/keras_classifiers.py +0 -702
  96. pgsui/impute/unsupervised/models/in_development/cnn_model.py +0 -486
  97. pgsui/impute/unsupervised/neural_network_imputers.py +0 -1424
  98. pgsui/impute/unsupervised/neural_network_methods.py +0 -1549
  99. pgsui/pg_sui.py +0 -261
  100. pgsui/utils/sequence_tools.py +0 -407
  101. simulation/sim_benchmarks.py +0 -333
  102. simulation/sim_treeparams.py +0 -475
  103. test/__init__.py +0 -0
  104. test/pg_sui_simtest.py +0 -215
  105. test/pg_sui_testing.py +0 -523
  106. test/test.py +0 -297
  107. test/test_pgsui.py +0 -374
  108. test/test_tkc.py +0 -214
  109. {pg_sui-1.0.2.1.dist-info → pg_sui-1.6.8.dist-info/licenses}/LICENSE +0 -0
  110. /pgsui/{example_data/trees → electron/app}/__init__.py +0 -0
  111. /pgsui/impute/{unsupervised/models/in_development → supervised/imputers}/__init__.py +0 -0
  112. {simulation → pgsui/impute/unsupervised/imputers}/__init__.py +0 -0
pg_sui-1.0.2.1.dist-info/RECORD DELETED
@@ -1,75 +0,0 @@
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- pgsui/__init__.py,sha256=x9qoV6vULdMKnvpieT2OTwykUj1JlMn9F9WOtnuSq6s,1449
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- pgsui/data_processing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pgsui/example_data/phylip_files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pgsui/example_data/phylip_files/test.phy,sha256=LEq2Q3hjmPVDP2uF1Ai8OH2If5Y58ny-GRfuXa3l61c,238537
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- pgsui/example_data/phylip_files/test_n100.phy,sha256=LqXLINViOlDpmer2QWyu_Rd_GrCxAnsg6NgogKatnY4,13428
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- pgsui/example_data/phylip_files/test_n500.phy,sha256=C1_y8CxP6Z5vYfY4nwckxdOL2pXKjLEoYmB_FIPW0xY,60228
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- pgsui/example_data/popmaps/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pgsui/example_data/popmaps/test.popmap,sha256=20sFUh3toDNO5wnNuv3FUEBUDkHosMeSclECCDtW354,1954
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- pgsui/example_data/structure_files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pgsui/example_data/structure_files/test.nopops.1row.10sites.str,sha256=BxlTqWRXjVJFAkA3mnmicMK69AjoBY57R2gkDDo2dwQ,6375
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- pgsui/example_data/structure_files/test.nopops.2row.100sites.str,sha256=BzYura7k1O1Qv_FPz57IuuiWMwPV5DU6RPkJhKYdbhs,50808
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- pgsui/example_data/structure_files/test.nopops.2row.10sites.str,sha256=q0fkZJN9vvHbUsUnTaNLWA4eEYqcZo_4VRNDAhEqACg,7978
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- pgsui/example_data/structure_files/test.nopops.2row.30sites.str,sha256=OIkbvM9GDvp9ZVbmRS6QE1xkTLjsP6NlWALy9u4nCDo,17512
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- pgsui/example_data/structure_files/test.nopops.2row.allsites.str,sha256=A4oa4lNQicJmmLpsIwEFCOxJ08_jVusHQjEjIBot7ks,967410
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- pgsui/example_data/structure_files/test.pops.1row.10sites.str,sha256=bg3n0oMIj8eXTbZn4T89kv0Jb6mWDIHB5jQIrwVGbZA,6609
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- pgsui/example_data/structure_files/test.pops.2row.10sites.str,sha256=DDTnKtLVIJzaUL9ufab4cw1OySnkQ0-4nQD_x051OeI,8446
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- pgsui/example_data/structure_files/test.pops.2row.allsites.str,sha256=fbmLcOUQSKyy71A77NPtJJMLSOkquPky0WiPlV4qHhA,967878
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- pgsui/example_data/trees/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pgsui/example_data/trees/test.iqtree,sha256=vcWGWdXys6v5zmCogS761W1AplkqDuXD9f3gzzcLxOw,25575
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- pgsui/example_data/trees/test.qmat,sha256=WDFO2YboGWYMKJeOq5etBRvB19IHsBQhNzWoi7Z3irg,134
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- pgsui/example_data/trees/test.rate,sha256=5ROH2y26oWTveeEEx4UVKeTd6SuNN5jIo2HBaOdgH-U,46013
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- pgsui/example_data/trees/test.tre,sha256=ZwH7j5hJidraGfjttBNOZ_AyDm6flTesONs4cfT8gbQ,4696
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- pgsui/example_data/trees/test_n10.rate,sha256=QntpWWt0nS3LmAIdnKMv501rJ2nwoIaBFRL9hiwdfgw,678
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- pgsui/example_data/trees/test_n100.rate,sha256=OSsJsWVwfw1e_LE16BFbFppIrXYyC19mNjk3XYQaC6s,2577
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- pgsui/example_data/trees/test_n500.rate,sha256=ZtROaOo93eQ4AWi8dR_5blBMoQ2kcK-hfQ7iEIWHaLA,11387
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- pgsui/example_data/trees/test_siterates.txt,sha256=90GBD6ay6G-e-PMPGRZv9oihViwTjtRPycbmlekxKTI,16235
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- pgsui/example_data/trees/test_siterates_n10.txt,sha256=sBH770qAI5x-8aN-o4EGP784UFRcSvIBMUC8oUrFiwI,80
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- pgsui/example_data/trees/test_siterates_n100.txt,sha256=9kmDNbjHBQIFVrdmwTmU0bTqIFj4KfgWzsVjR2PZwYI,804
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- pgsui/example_data/trees/test_siterates_n500.txt,sha256=cqLjXZtYSiK5j3vVhX6tMKbR9ngxhOw9Q6FtRCDRAko,4008
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- pgsui/example_data/vcf_files/test.vcf,sha256=xF7VaqnmHSNauW3xCIMpWw1yIXa6RRAbizg66SzVUHM,380243
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- pgsui/example_data/vcf_files/test.vcf.gz,sha256=g49C0ycJ4HAjT7oqlq9sV2q1NmZdCYkp5jT33RRveio,72705
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- pgsui/example_data/vcf_files/test.vcf.gz.tbi,sha256=zxitJWi7Vw1AdO4yiX5y-3NCRxiTUi0TfOcxR8RVzpI,2581
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- pgsui/impute/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pgsui/impute/estimators.py,sha256=rGCfJ5iVz447lkqQLSDGHnUOUpuIKEk0BJAtuoQFn7I,50829
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- pgsui/impute/impute.py,sha256=jAeFBeyZhh2cdhlGFui9kgUqhsViDHDEZnR46geNX5w,51968
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- pgsui/impute/simple_imputers.py,sha256=4PmDIxgIbhDhQS3E1t5Mr5_BC4JWuuH8HOH_t2vI-vU,53618
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- pgsui/impute/supervised/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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pg_sui-1.0.2.1.dist-info/top_level.txt DELETED
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pgsui/example_data/phylip_files/test_n10.phy DELETED
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- ONCO_BX602 TGTTACCGGT
31
- ONKS_BXON61_133 TGYTACCGGT
32
- FLFL_BXFL01 TGTTACCGRT
33
- FLFL_BX683 TGTTACCGAT
34
- TTLA_BXTT35_1486 TGTTGCCGGT
35
- TTAR_BX507 TGTTACCGGT
36
- TTTX_BX227 TGTTRCYGGT
37
- TTTX_BX225 TGTTACCGGT
38
- TTLA_BXTT34_1482 TGTTACCGGT
39
- TTLA_BXTT36_1491 TGYTRCCAGN
40
- TTLA_BXTT37_1492 TGTTRCCGGT
41
- TTAR_BX987 TGNTACCNGT
42
- TTLA_BXTT38_1493 TGTTRCCGGT
43
- TTTX_BX222 NGYTRYYGGT
44
- TTLA_BX421 TGTTACCRGT
45
- TTKS_BXTT20_78 TGYTGCCAGT
46
- TTLA_BXTT13 TGTTRCCRGT
47
- TTAR_BX984 TNTTACCGGT
48
- TTLA_BX422 TGTTACCGGT
49
- TTLA_BXTT39_1498 TNTTACCRGT
50
- TTTX_BX223 TGTTACCGGT
51
- TTTX_BX228 TRNTACCRGT
52
- MXMX_BX1195 TGYTACCGAT
53
- MXMX_BX1194 TGTTACCGAT
54
- MXMX_BX1196 TGYTACCGAT
55
- GUMS_BXGU68_AA42 TGTTACCGGT
56
- GUMS_BXGU53_T72 TGTTACCAGT
57
- GUMS_BXGU78_AA52 TGTTACCRRT
58
- GUMS_BXGU75_AA49 NGTTACCGRT
59
- GUMS_BXGU76_AA50 TGTTACCRGT
60
- GUMS_BXGU69_AA43 YGTTACCRRT
61
- GUMS_BXGU77_AA51 TGTTACCGGT
62
- GUMS_BXGU67_AA41 TGTTACCNRT
63
- GUMS_BXGU74_AA48 TGTTACCANT
64
- GUMS_BXGU73_AA47 TGTTACCNGT
65
- GUMS_BXGU50_T69 TGTTACCGGT
66
- GUMS_BXGU48_T62 YGTTACCGGT
67
- GUMS_BXGU56_T83 TGNTACCGRT
68
- GUMS_BXGU58_T92 TGNTACCNGT
69
- GUMS_BXGU54_T73 TGTTACCGGT
70
- GUMS_BXGU44_T56 TGTTACCGGT
71
- GUMS_BX200 YGNTACCGGT
72
- GUMS_BXGU79_AA73 TGTTACCAGT
73
- GUMS_BXGU49_T66 TGTTACCGGT
74
- GUMS_BXGU72_AA46 TGTTACCGGT
75
- GUMS_BXGU71_AA45 TGNTACCGGT
76
- GUMS_BXGU43_T55 TGYTAYCGRT
77
- GUMS_BXGU47_T61 TGTTRCCRGT
78
- GUMS_BXGU45_T59 TGTTACCRGT
79
- EASC_BXEA43_1307 TGTTACCGAN
80
- EAGA_BXEA49_564 TGNTANCGGT
81
- EAGA_BX660 YGTTACCGGT
82
- EAAL_BXEA27 TGTTACCGAT
83
- TCAL_BXTC63 TGTTRCCGGT
84
- TCAL_BX612 TGTTACCRNN
85
- TCAL_BXTC93 TGTTACCNAT
86
- EAGA_BXEA35_666 NNTTACCGGT
87
- EASC_BX1108 TGTTACCAGT
88
- EAGA_BXEA17 TGTTAYCRGT
89
- EAGA_BXEA34_665 TGTTACCGAT
90
- EASC_BXEA42_1306 TGTTACCGGT
91
- TCAL_BX279 TGTTACCGGT
92
- EAVA_BX320 NGTWACCAAT
93
- EAGA_BXEA21 TGTTACCRNT
94
- EATN_BXEA02_36x2 TGTTACCNAT
95
- EAVA_BX101 TGTTACCRGT
96
- EASC_BXEA41_1305 TGTTACCNAT
97
- EAGA_BXEA25 TGTTACCGAK
98
- TCAL_BXTC92 TGTTAYCGGT
99
- EAGA_BX346 TGTTACCAGT
100
- EAVA_BX321 TGTTACCRAT
101
- EAGA_BX472 YGTTRCCGAT
102
- EASC_BXEA40_1304 TGTTAYCRAT
103
- EASC_BX1115 TGTTRCCGAT
104
- EAGA_BXEA32_662 TGTTAYCGAT
105
- TCAL_BX273 TGTTACCGNN
106
- EASC_BX1109 TGTTACCNNT
107
- TCAL_BXTC80 TGTTACCNAN
108
- EASC_BX1110 TGYTACCGAT
109
- TCAL_BXTC110 TGTTACCGNT
110
- EAGA_BXEA31_659 TGTTACCGRT
111
- EASC_BX1112 TGTTACCGGT
112
- EAGA_BX301 TGTTACCGGT
113
- EAGA_BXEA15_654 YGTTACCGGN
114
- EASC_BX1114 TGTTACCGRN
115
- TCGA_BX344 YGTWACCART
116
- EAGA_BXEA33_663 TNTTACCRAT
117
- CHCH_BX1191 TGTTACCGGT
118
- CHCH_BX1193 TGTTACCGGT
pgsui/example_data/phylip_files/test_n100.phy DELETED
@@ -1,118 +0,0 @@
1
- 117 100
2
- GUFL_BXGU36_AA14 GCGRGCCTCACCGGGTTGCSCNGAGACAGAKRAAGACCAGCGCCGATCCTGGNTCTNCNCCTGGAGAGTTAGCACCCCCACCCGTARTGATGTTACCGAT
3
- GUFL_BX626 GCGGGCCTNGCCGGGTTGCCCGGAGACAGANRARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTNGCANCCCCACCCGTAGTGAYGTNACCGRN
4
- GUFL_BXGU65_AA39 GCGGGCCTCGGCGGGTTGCCCGGAGNNAGATGAGGACCAGYGMCGATCCTGGCTCTGCCCCTGGANAGTTAGCACCCCCAYCCGTAGTGATGTWACCGAT
5
- GUFL_BX684 GCNGGCCTCNSCGGGTTGCNCGGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCNCTGGAGAGTTNGCACCCCCAYCCGNAGTGATGTTACCGAT
6
- GUFL_BX504 GCGGGCCTCGSCGGGTTGCCCGGAGACAGATGAGGACCANCGMCGATNCTGGCTCNGCCCCTGGAGAGTTAGCACCCCCAYCCNTAGTGATGTTACCNAT
7
- GUFL_BX503 GCGGGCCTNGSCNGGTTGCCCKGAGACAGAGGAGGACCAGCGCCGATCCTGGCTCTGCCNCTGGAGANTTAGCACNCCCAYCCGTAGKGANGTTACCGRT
8
- GUFL_BXGU32 GCGGGCCTNGSCGGGTTGCCNGGAGACAGAKGAGGACCANCGCCGATCCTGGCTCTGCCCCTGGAGAGTTNGYACCCCCAYCCGTAGTGACGTTACCGAT
9
- GUFL_BXGU63_AA37 GCGGGCCTCGCCNGGTTNCCCKGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGTACCCCCACCCGTAGTGAYGTTACCART
10
- GUFL_BXGU35_AA13 GCRGGCCTCGCCGGGNNGCCCGGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCCCTRGANAGTTAGYACNCCCATCCGTAGTGATGTTACCAAT
11
- GUFL_BXGU61_U57 GCGGGCCTCGSCGGGTNGCCCGGAGANAGATGAGGACCAGCGCCGATNNNGGCTCNGCCCCTGGAGAGTTAGCACCCNCAYCCGTARTGATGTTACCNAT
12
- GUFL_BXGU62_AA36 GCGGGCCTCGNCGGGTTGCNCGGAKACAGAKGAGGACCAGCNCCGATCCNGGCTCNGCCCCTGGAGAGTTAGYACCCCCACCCGTANKGATGTTACCAAT
13
- GUFL_BX685 GNGRGCCTCNCCGGGTYGCCCKGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGANTTAGCACCCCCACCCGTAGTGATGTTACCGAK
14
- GUFL_BXGU33 GCGGGCCTCNCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCNTGGAGANTTAGCACCCCCAYCCGTAGTGATGTTACCGAT
15
- DSAZ_BX1213 GCGGGCCTCGCTGGTTTGCCCGGAGACAKATGAGAACCAGCGCCGATCCTGGTWCTGCCCCTGGAGAGTTAGCACCCCYATCCGTAGTGATGTTACCGGT
16
- DSNM_BXDS02 GCGGGCCTCGCTGGTTTGCCCGGAGACAKMTGARAACCAGCGCCGATCCTGGYTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGMTGTTACCGGT
17
- ONWI_BX489 GCGGGCTTCGCTGGTTNGCCCGGAGANMGATGAAAACCAGCGCCGATCCTRGTTCTGCCCCTGGAGAGTTAGNACCCCCATCCGTAGTGATGTTACCGAT
18
- ONWI_BX493 RCGGGCYTCGCTGNTTTGCCCGGAGACAGMTGAAAACCAGCGCCGATCCTGNTTCTGCCCCTGGNGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
19
- ONTX_BXON46_153 GCGGGCCTCGCTGGTTTGCCCGGAGACAGMTRAGAACCAGCGCCGATCCTGGTTCTRCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATRTTNCCAGT
20
- ONNE_BXON58_433x2 GCGGGCCTCGCNGGTNNGCCCGGAGACMGCTGAGAACCAGCGCCGATCCTGGTTCTGCNCCTGGAGAGTTNGCANCCCCATCCGTAGTGATGTTACCGGT
21
- ONWI_BX495 GCGGGCYTCGCTGGTTTGCCCGGAGACAGATGAAAACCAGCGCCGATCCTGGTTCTGCCCCTGGRGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
22
- ONWI_BX491 GCGGGCYTCGCTGGTTTGCCCGGAGACAGMTGAAAACCAGCGCCGNTCCTRGTWCTGCCCCTGGANAGTTAGCACCCCCATCCGTAGTGATGTTACCGRT
23
- ONWI_BX497 RCGGGCCTCGCTGGTTTGCCCGGAGACAKMTRARAACCAGCGCCGATCCTGGTTCTGCCCCTGGRGAGTTAGNACCNCCATCCGTAGTGATGTTACCGGT
24
- ONCO_BX601 GCGGGCCTCGCTGGTTTGCCCGGAGNCAGCTGAGAACCAGCGCCRATCCTGGTTCTGCCCCTNGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
25
- ONCO_BX588 RCGGGCCTCGCTGNTTNGNCCGGAGACAGATGAGAACCAGCGCCAATCCTGGTTCTGCCCCTGGAGAGNTAGCACCCCCAYCCGTAGTGATGTTACCGGT
26
- ONWI_BX486 GNGGGCCTCGCTGGTTTGCCCGNAGACAGMTGARAACCAGCGCCGATCCTGGTTCTGNCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
27
- ONTX_BXON45_150 ACGGGCCTCGCTGGTTTGCCCGGAGACMGANGAAAACCAGCGCCGATCCTNNTTCTGCCCCTGGANAGTTAGCACCCCCANCCGTAGTGMTRTTACCGGT
28
- ONCO_BX580 GCGGGCCTCNCTGGTTTGCCCGGAGACAKMTGAGAACCAGCGCCRATYCTGGTTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATNNTACCGGT
29
- ONWI_BX490 RCGGGCCTCGNTGNTTTGCCCGGAGACAGMTGAAAACCAGCGCCGATCCTAGTWCTRCCCCTGGRGAGTTAGNNCCCCCATCCGTAGTGATGTTACCGGT
30
- ONCO_BX602 RNGGGCCTCGCTGGTTTGCCCGNAGACAKMTGAGAACCAGCGCCGATYCTGGTTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
31
- ONKS_BXON61_133 GCGGGCYTCGCTGGTTTGCCCGGAGACMGMTGARAACCAGCGCCGATCCTGGTWCTGCCCCTGGAGAGTTAGCACCCCYAYCCGTAGTGATGYTACCGGT
32
- FLFL_BXFL01 GCRGGCCCCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACTCCCACMCGTAGTGATGTTACCGRT
33
- FLFL_BX683 GCRGGCCCCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCTTGGCTCTGCCCCTGGAGAGTTAGCACTCCCACMCGTAGTGATGTTACCGAT
34
- TTLA_BXTT35_1486 GNGGGCCTCGNCGGGTTGNSCGGAGACAGATGAGGACCASYGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCATCYCCATCCNTAGKGNTGTTGCCGGT
35
- TTAR_BX507 GCGGGCCTCGNCGGGNTGCCCGGAGACAGATRAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCGNAGTGATGTTACCGGT
36
- TTTX_BX227 GCGGGCCTCGCCGGGTTGCSCGGAGACAGATRARGWCCAGCGCYGATCCTGGCWCTGCCCCTRGAGAGTTARCACCCCCATCCGTAGTGATGTTRCYGGT
37
- TTTX_BX225 GTGGGNCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
38
- TTLA_BXTT34_1482 GCGRGCYTCGCCGGGTTGCSMKGAGACAGNTGAGGWCCAGCGCCGANCCTGGCTCNGCCCCTGGARAGTTAGCACYCCCMTCCGTAGTGATGTTACCGGT
39
- TTLA_BXTT36_1491 GNGGGCCTCGCCGGGTTGCCCGGAGACAGATGAAGACCAGCGCCGATCCTGGCTCTGCNCCTGGAGAGTTAGCANCYCCMTCCGTAGTGATGYTRCCAGN
40
- TTLA_BXTT37_1492 GNGAGCCTCGCCGGGTTGCCCTGAGACAGATGAGGWCCAGCGCCGATCCTGNCTCTGCCCCTRGAGAGTTAGCACCCCCACCCGTAGTGATGTTRCCGGT
41
- TTAR_BX987 GCGGGCCTCNCCGGGTTGCCCGGAGACAGATGAAGACCAGCGCCGATYCTGGCTCTGCCCCTGGAGAGTTARCACCCCCAYCCGTAGTGATGNTACCNGT
42
- TTLA_BXTT38_1493 GCGRGCYTSGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGWWCCTGGNTCTGCCCCTGGAGAGTTNGNACCCCCATCCGTAGTGATGTTRCCGGT
43
- TTTX_BX222 GCGRGCYTCGCCGGGTTGCCCGGAGACAGATGAAGACCASCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGANGYTRYYGGT
44
- TTLA_BX421 GCGRGCCTCNCCGGGTTGCCCKGAGACAGATGAGGWCYAGCGCCGATCCTGNCTCTGYCCCTGGAGAGTTAGCACCNCCMTCCGNAGTGATGTTACCRGT
45
- TTKS_BXTT20_78 GCGGGCCTCGCCGGGTTGCCCNGAGACAGATGAGGWCCAGCGCCGWTCCTGGCTCTGCCCCTGRAGAGTTAGCACCCCCACCCGTAGTGATGYTGCCAGT
46
- TTLA_BXTT13 GCGAGCCTSGCNRGGTTRCCCGGAGACANATGAGGACYAGCGCCGATCCTGGCTCTGYCCCTRGAGAGTTARCACCYCCAYCCSTAGTGATGTTRCCRGT
47
- TTAR_BX984 GCGGGCCTCGNCGGGTTGCCCGGAGNCANATGAAGACYAGCGCCGATNCTGGCWCTGCCNCTGGAGAGTTAGCACCCCCACCCGTAGTGATNTTACCGGT
48
- TTLA_BX422 GCGRGCCTCGCCGGGTTGCCCGGAGACANATGAGGACCAGCGCCGATCCTGGCTCTGCCNCTRGAGAGTTAGCACCYNCATCCGTAGTGATGTTACCGGT
49
- TTLA_BXTT39_1498 GCGGGNCTCGCCGGGTTGCGCKGAGACAGATGAGGACCASCGCCGATCCTGGCWCTGCCCCTGGAGANTTWGCACNYCCAYCCGTAGTGATNTTACCRGT
50
- TTTX_BX223 GCGGGCCTCGCCGGGTTGCGCGGAGACAGATGANGACCAGCGCCGATCCTGGCTCTGCCCCTRGARAGTTAGCACCCCCNYCCGTAGTGATGTTACCGGT
51
- TTTX_BX228 GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGAGGACCASCGCCGNACCTGGCACTGYCCCTGGAGAGTTWRCACNCCCACCCGTAGTGATRNTACCRGT
52
- MXMX_BX1195 GCGGGCCTCGCCGGGTTGYCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCGTAGTGATGYTACCGAT
53
- MXMX_BX1194 GCGGGCCTCGCCGGGTTGYCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGAT
54
- MXMX_BX1196 GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGYTACCGAT
55
- GUMS_BXGU68_AA42 GCGGGCCTCGCCGRGTTGCCCKGAGWCAGATGAGGACYAGCGCCGNTCCTGGCTCTGCCCCTGGAGAGNTAGCACCCCCAYCCGTAGTGATGTTACCGGT
56
- GUMS_BXGU53_T72 GCGGGCCTCGSCGGGTTNCCCGGAGACAGATGRGGACCAGCGCYGATCCWGGCTCNGCNCCTGGAGAKTTWGCACCCNCACCYGTAGTGATGTTACCAGT
57
- GUMS_BXGU78_AA52 GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGAGGACYAGCGCCGATCCWGGCTCTGNNCCTGRAGAGTTAGCACNCCCATCCGCAGTGATGTTACCRRT
58
- GUMS_BXGU75_AA49 GCGGGCCTCGCCRGGTTGCCCTGAGACAGATGARGACCAGCGCCGATCCNGGCTCWGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGANGTTACCGRT
59
- GUMS_BXGU76_AA50 GCGGGCCTCGCCGRGTTGCCCKRAGACAGATGAGGACYAGCGCCGATCCAGGCTCTGCCCCTGGAGAKNTAGCACCCCCATCCGTAGTGATGTTACCRGT
60
- GUMS_BXGU69_AA43 GCGGGCCTCNCCGGGTTGCCCKGRGACAGATGARGACCAGCGCCGATCCWGGCTCNGNCCYTRGAGAGTTAGCACNCCCAYCCGTAGKGAYGTTACCRRT
61
- GUMS_BXGU77_AA51 GCGGGCCTCGCCGGGTTGCNCKGRGACAGATGAGGACCAGCGCCGATCCWGGCTCTGCCCCTGRAGAGTKAGNACCCCCATCCGYAGTGATGTTACCGGT
62
- GUMS_BXGU67_AA41 GCGGGCCTCGCCGGGTTGCCCKGAGACAGAKGAGGACCAGCGCCGATNCWGGCTCNGCCCCTGGAGAGTTAGCACNCNCACCCGTAGTGATGTTACCNRT
63
- GUMS_BXGU74_AA48 GCGGNCCTCGCCGGGTTGCCNTGAGANAGATGAGGACCAGCGCCGATCCNGGCTCTGNCCCTGGANAGTTAGCANCCCCATCCGTAGKGATGTTACCANT
64
- GUMS_BXGU73_AA47 GCGGGCCTCGCCGGGTTGCCCKAAGACAGAKGAGGACCAGCGCCGATCCWGGCTCTGCCCCTRGAGAGTKAGNACCCCCAYCCGTAGKGATGTTACCNGT
65
- GUMS_BXGU50_T69 GCGGGCCTCGSCGGGTTGCCCKGAGACAGATGARGACCAGCGCCGATCNWGGCTCTGCCYCTGGANAGTTAGCACCCCCACCCGTAGTGATGTTACCGGT
66
- GUMS_BXGU48_T62 GCGGGCCTCGCCGGGYNGCCCKGAGAMAGAKGARGACCAGCGCCGANCNAGGNTCAGCCCCTGGAGAGTTAGCACCCCCACCYGTAGTGAYGTTACCGGT
67
- GUMS_BXGU56_T83 GCGGGCCTCGCCGGGTTGCCCKGAGACNGATGARGACYAGCGCCGATCCTGGCTCTGCCYCTGGAGAGTTAGCACCCNCAYCCGTAGTGATGNTACCGRT
68
- GUMS_BXGU58_T92 GCGGGCCTCGCCGGGTTGCNCKGAGACAGATGAGGACCAGCNCCGATCCNGGCTCTGCCCCTGGAGAGTTNGCNCCCCCACCCGTAGTGATGNTACCNGT
69
- GUMS_BXGU54_T73 GCGGGCCTCNCCRGGTNGCCMKGAGANAGNTGAGGNCCAGCGCCGATCCNGGCTCTGCCCCTGGANAGTTNGNANCCCCATCCGTAGTGATGTTACCGGT
70
- GUMS_BXGU44_T56 GCGGGCCTCGCCGGGTTGCCCKGAGACAGAKGRRGAYCAGCGCCGATCCNGGCTCTGCCCCTGGAGAGTKAGCACCCNCAYCCGTAGTCATGTTACCGGT
71
- GUMS_BX200 GCGGGCCTCGCCGGGTTGCCCTGAGACAGATGAGGACCAGCGCCGATCCWGGCTCTGCCCCTGGANAGTTNGCACCCCCAYCCGTAGTGAYGNTACCGGT
72
- GUMS_BXGU79_AA73 GCGGGCCTCGCCGGGTTGCCMKGAGACAGAGNAGGACCAGCGCCGATNCWGGCTCTGCCCCTRRAGAGTKNGNACCCCCAYCCGTAGTGATGTTACCAGT
73
- GUMS_BXGU49_T66 GCGGGCCTCGCCGRGTTGCCCNGAGAMAGATRARGACCAGCGCCGWNCCWGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGGT
74
- GUMS_BXGU72_AA46 GCGGRCCTCGCCGGGTTGCCMKGAGACAGATGARGACCAGCGCCGATCCWGCCTCTGCCCCTGGAGAGTKAGCACCCCCAYCCGTAGTGATGTTACCGGT
75
- GUMS_BXGU71_AA45 GCGGGCCTCGCCGRGTNGCCNKGRGACAGATGAGGACYAGCGCCGATCCWGGCTCTGCCCCTGGAGAGNTAGCACCCNCATCCSTAGTGATGNTACCGGT
76
- GUMS_BXGU43_T55 GCGGGCCTCGNCGGGTTGCCCTGAGWCAGATGARGACCAGCNCCGANCCAGGCTCWGCCCCTGGNNAGTTAGNACCCCCNCCCGTAGKGATGYTAYCGRT
77
- GUMS_BXGU47_T61 GCGGGCCTCGCCGGGTTGCCCKGAGACAGAKGRRGAYYAGCGCCGATCCTGGCWCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTRCCRGT
78
- GUMS_BXGU45_T59 GCGGGCCTCNCCGGGTTGNCCNGAGACAGATGRGGACCAGCGCYGATCCAGGCWCNGNCCCTGGANAGTTAGCACCCCCACCYGTAGTGNTGTTACCRGT
79
- EASC_BXEA43_1307 GNGGGNCTCNNCGGGTTNNCCNGAGNNAGATGAGGACCAGCGCCGATCCTGGCTCTGNCCCTGGANAGTTNGCACCCCCACCCGTAGTGATGTTACCGAN
80
- EAGA_BXEA49_564 GYGRGCCTCRCCGGGTTGCCCGGAGANAGATGARGACNRGCRCCGNTCCTGGCTCTGCCCCTGNAGAGTTAGCACCCSCAYCCGTRGTGATGNTANCGGT
81
- EAGA_BX660 GNGGGCCTCNCCGGGTTNNCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCWCTGCCCCTNGAGAGTTAGCACCCCCAYCCGTAGTNNYGTTACCGGT
82
- EAAL_BXEA27 GCGRGNCTCGCCGGGYTGCCCKGAKACAGATGAGGACCAGCGCCGATCCTGGCWCTGCCCCTGGAGANTTNGCACCCSCAYCCGTAGTGATGTTACCGAT
83
- TCAL_BXTC63 GCGGGCCTCGCCGGGTTGCCCKGAGACAGATGAGGACCAGCGCCGANCCTGGCTCTGNCCCTGGAGAGTTAGCACCCGCACCCGTAGTGATGTTRCCGGT
84
- TCAL_BX612 GNGGGCCTCNCCGGGTTNNCCKGAGACAGAKGAGGACCAGCNCNGATCCTGGCTCTGCCCCTGGAGANTTAGCACCCSCAYCCGTAGKGNTGTTACCRNN
85
- TCAL_BXTC93 GCRGRCCTCNCCGGGTTGCCCGGAGACAGATRAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCYGTAGTGATGTTACCNAT
86
- EAGA_BXEA35_666 GCGRGCCTCNSCGGGNNNCCCNGAGACAGNTGAAGACCAGCGCCGATCCTGGCWCNNNCCCTGGAGAGTTAGCANNCNCACCCGTAGTNANNTTACCGGT
87
- EASC_BX1108 GCGRGCCTCGCCGGGTTGCCCGGAGACAGATRARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCSTRNTGATGTTACCAGT
88
- EAGA_BXEA17 GCGRGCCTCGSCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGNTCCTGGCTCTGNCCCKGGAGAGTTAGCACCCCCAYCYGTAGTGATGTTAYCRGT
89
- EAGA_BXEA34_665 GCGRGCCTCGSCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGNTNRCACCCCCAYCCGTRGTGATGTTACCGAT
90
- EASC_BXEA42_1306 GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGANAGTTAGCANNCSCAYCCGTAGTGATGTTACCGGT
91
- TCAL_BX279 GCGRGCCTCRCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCWCCCSCATCCGTAGTGNTGTTACCGGT
92
- EAVA_BX320 GNGGGCCTCGCCGGGTTGCNCGGAGANAGATGAGGACCAGCGCCGATCCTGGCTYTGNCCCTGGAGAGTTAGCACCCCCACCCGTAGTGANGTWACCAAT
93
- EAGA_BXEA21 GCGGGCCTCGCCGGGTTGCCMGGAGACAGATGARGACCAGCGCCGATCCTGNCTNTGCCCCKGGAGAGTTAGCACCCCCAYCCGTAGTGATGTTACCRNT
94
- EATN_BXEA02_36x2 GCGGGCCTCGCCGGGTYNCCCGGAGACAGATGNGGACCAGCNCNGATCCTGGNTCTGNCCNTGGAGAGTTNGCNCCCNCANCCGTAGTGATGTTACCNAT
95
- EAVA_BX101 GCGGGCCTCGSCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCYCCTGGAGAGTTAGCACCCCCAYCYGTAGTGATGTTACCRGT
96
- EASC_BXEA41_1305 GCRRGCCTCNCCGGGTNGCCCGGAGACAGATGARGNCCAGCGCCGATCCTGGCWCTGCCCYTGGANAGTTAGCACCCCCATCCGTAGTGATGTTACCNAT
97
- EAGA_BXEA25 GCGGGNCTNNNCGGGTTGCCCKGAGACAGATGAGNACCAGCGCCGWTNCTGGCTNTGNCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGAK
98
- TCAL_BXTC92 GCGRGNCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCNCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTAYCGGT
99
- EAGA_BX346 GCGGGCCTCGCCGGGTTGCCCGGAKACAGATGAGGACCRGCGCCGATCCTGGCTYNGNCCCTGGANAGTTAGCWCCCCCACCCGTAGTGATGTTACCAGT
100
- EAVA_BX321 GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCYCCTGGAGAGTTAGCACCCSCAYCCGTAGTGATGTTACCRAT
101
- EAGA_BX472 GCGRGCCTCGCCGGGTTGCNCGGAGACAGATGAGGACCAGCNCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGKGAYGTTRCCGAT
102
- EASC_BXEA40_1304 GCGRGCCTCGCCGGGTTGCCCNGAGACAGATGAGGACCAGCGCCGATCCNGGCTCTGCCCCTGGANAGTTAGCACCCSCACCCGTAGTGATGTTAYCRAT
103
- EASC_BX1115 GCGGGCCTNGCCGGGTTGCCCGGAGACAGATGRRGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGRGTTAGCACCCCCACCCSTAGTNATGTTRCCGAT
104
- EAGA_BXEA32_662 GCGAGCCTCGSCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCNCCTGGNGAGGTAGCACCCCCACCCGTAGTGATGTTAYCGAT
105
- TCAL_BX273 GCGGGCCTNGSCGGGTTGCCCGGAGACANATGAGGACCAGCACCGATCCTGGCTCTGCCNCTGGAGAGTTAGCANCCCCACCCGTAGTGATGTTACCGNN
106
- EASC_BX1109 GCGGGNCTNNCCGGGTTNCCCKGAGACAGATGAGGACCAGCNCCGWTCCTGGCWNTGCCCCTGGAGAGTTNGCACCCCCATCCGNAGTGATGTTACCNNT
107
- TCAL_BXTC80 GCARGCCTCGCCGGGTTGCCCGGAGACAGAKNAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCNAN
108
- EASC_BX1110 GCGGRCCTCGCCGGGTTGCCCGGAGANAGAKGARGACCAGCGCCGATCCTGGCTCNGCCCCTGGANAGTTAGCACCCCCMYCCGTAGTGATGYTACCGAT
109
- TCAL_BXTC110 GCGRGCCTCGCCGGGTTGCNCGGAGACAGAKGAAGACCAGCGCCGATCCTGGCTCTGCCNCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGNT
110
- EAGA_BXEA31_659 GCGRGCCTCGNCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTNTGCCCCTGGAGAGTTWGCACCCSCACCCGTAGTGATGTTACCGRT
111
- EASC_BX1112 GCGRGCCTCGCCGGGTTGCCCGGAGACAGATGRGGACCNGCGCCGWTNCTGGCWCTGTCCCTGGAGRGTTAGCACCCCCATCCSTAGTGATGTTACCGGT
112
- EAGA_BX301 GCGRGCCTCGCCGGGTTGCGCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGANAGTTAGCACCCCCACCCGTAGTGATGTTACCGGT
113
- EAGA_BXEA15_654 GCGRGNCTCNSCRGGTTGCCCGGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGANAGNTAGCACCCCCACCCGTAGTGAYGTTACCGGN
114
- EASC_BX1114 GCGRGCCTCGCCGGGTTGCCCGGAGACAGATRRGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGRGTTAGCACCCCCAYCCCTAGTGATGTTACCGRN
115
- TCGA_BX344 GNGRGCCTCGCCGGGTTRCCCGGAGACAGAKGRAGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCGTAGTGAYGTWACCART
116
- EAGA_BXEA33_663 GCGGGCCTCGNCGGGTNGCNCKGAGACAGATGAGGACCAGCGCCGATNCTGGCTNTGCCNCTGGANAGTTAGCACNNCCACCCGTANTGATNTTACCRAT
117
- CHCH_BX1191 GCGGGACTCGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTRGTGATGTTACCGGT
118
- CHCH_BX1193 GCGGGACTCGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTRGTGATGTTACCGGT
pgsui/example_data/phylip_files/test_n2.phy DELETED
@@ -1,118 +0,0 @@
1
- 117 2
2
- GUFL_BXGU36_AA14 AT
3
- GUFL_BX626 RN
4
- GUFL_BXGU65_AA39 AT
5
- GUFL_BX684 AT
6
- GUFL_BX504 AT
7
- GUFL_BX503 RT
8
- GUFL_BXGU32 AT
9
- GUFL_BXGU63_AA37 RT
10
- GUFL_BXGU35_AA13 AT
11
- GUFL_BXGU61_U57 AT
12
- GUFL_BXGU62_AA36 AT
13
- GUFL_BX685 AK
14
- GUFL_BXGU33 AT
15
- DSAZ_BX1213 GT
16
- DSNM_BXDS02 GT
17
- ONWI_BX489 AT
18
- ONWI_BX493 GT
19
- ONTX_BXON46_153 GT
20
- ONNE_BXON58_433x2 GT
21
- ONWI_BX495 GT
22
- ONWI_BX491 RT
23
- ONWI_BX497 GT
24
- ONCO_BX601 GT
25
- ONCO_BX588 GT
26
- ONWI_BX486 GT
27
- ONTX_BXON45_150 GT
28
- ONCO_BX580 GT
29
- ONWI_BX490 GT
30
- ONCO_BX602 GT
31
- ONKS_BXON61_133 GT
32
- FLFL_BXFL01 RT
33
- FLFL_BX683 AT
34
- TTLA_BXTT35_1486 GT
35
- TTAR_BX507 GT
36
- TTTX_BX227 GT
37
- TTTX_BX225 GT
38
- TTLA_BXTT34_1482 GT
39
- TTLA_BXTT36_1491 GN
40
- TTLA_BXTT37_1492 GT
41
- TTAR_BX987 GT
42
- TTLA_BXTT38_1493 GT
43
- TTTX_BX222 GT
44
- TTLA_BX421 GT
45
- TTKS_BXTT20_78 GT
46
- TTLA_BXTT13 GT
47
- TTAR_BX984 GT
48
- TTLA_BX422 GT
49
- TTLA_BXTT39_1498 GT
50
- TTTX_BX223 GT
51
- TTTX_BX228 GT
52
- MXMX_BX1195 AT
53
- MXMX_BX1194 AT
54
- MXMX_BX1196 AT
55
- GUMS_BXGU68_AA42 GT
56
- GUMS_BXGU53_T72 GT
57
- GUMS_BXGU78_AA52 RT
58
- GUMS_BXGU75_AA49 RT
59
- GUMS_BXGU76_AA50 GT
60
- GUMS_BXGU69_AA43 RT
61
- GUMS_BXGU77_AA51 GT
62
- GUMS_BXGU67_AA41 RT
63
- GUMS_BXGU74_AA48 NT
64
- GUMS_BXGU73_AA47 GT
65
- GUMS_BXGU50_T69 GT
66
- GUMS_BXGU48_T62 GT
67
- GUMS_BXGU56_T83 RT
68
- GUMS_BXGU58_T92 GT
69
- GUMS_BXGU54_T73 GT
70
- GUMS_BXGU44_T56 GT
71
- GUMS_BX200 GT
72
- GUMS_BXGU79_AA73 GT
73
- GUMS_BXGU49_T66 GT
74
- GUMS_BXGU72_AA46 GT
75
- GUMS_BXGU71_AA45 GT
76
- GUMS_BXGU43_T55 RT
77
- GUMS_BXGU47_T61 GT
78
- GUMS_BXGU45_T59 GT
79
- EASC_BXEA43_1307 AN
80
- EAGA_BXEA49_564 GT
81
- EAGA_BX660 GT
82
- EAAL_BXEA27 AT
83
- TCAL_BXTC63 GT
84
- TCAL_BX612 NN
85
- TCAL_BXTC93 AT
86
- EAGA_BXEA35_666 GT
87
- EASC_BX1108 GT
88
- EAGA_BXEA17 GT
89
- EAGA_BXEA34_665 AT
90
- EASC_BXEA42_1306 GT
91
- TCAL_BX279 GT
92
- EAVA_BX320 AT
93
- EAGA_BXEA21 NT
94
- EATN_BXEA02_36x2 AT
95
- EAVA_BX101 GT
96
- EASC_BXEA41_1305 AT
97
- EAGA_BXEA25 AK
98
- TCAL_BXTC92 GT
99
- EAGA_BX346 GT
100
- EAVA_BX321 AT
101
- EAGA_BX472 AT
102
- EASC_BXEA40_1304 AT
103
- EASC_BX1115 AT
104
- EAGA_BXEA32_662 AT
105
- TCAL_BX273 NN
106
- EASC_BX1109 NT
107
- TCAL_BXTC80 AN
108
- EASC_BX1110 AT
109
- TCAL_BXTC110 NT
110
- EAGA_BXEA31_659 RT
111
- EASC_BX1112 GT
112
- EAGA_BX301 GT
113
- EAGA_BXEA15_654 GN
114
- EASC_BX1114 RN
115
- TCGA_BX344 RT
116
- EAGA_BXEA33_663 AT
117
- CHCH_BX1191 GT
118
- CHCH_BX1193 GT