PyPI - pg-sui - Versions diffs - 0.2.3__py3-none-any.whl → 1.6.14.dev9__py3-none-any.whl - Mend

pg-sui 0.2.3py3-none-any.whl → 1.6.14.dev9py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (127) hide show

{pg_sui-0.2.3.dist-info → pg_sui-1.6.14.dev9.dist-info}/METADATA +99 -77
pg_sui-1.6.14.dev9.dist-info/RECORD +81 -0
{pg_sui-0.2.3.dist-info → pg_sui-1.6.14.dev9.dist-info}/WHEEL +1 -1
pg_sui-1.6.14.dev9.dist-info/entry_points.txt +4 -0
{pg_sui-0.2.3.dist-info → pg_sui-1.6.14.dev9.dist-info/licenses}/LICENSE +0 -0
pg_sui-1.6.14.dev9.dist-info/top_level.txt +1 -0
pgsui/__init__.py +35 -54
pgsui/_version.py +34 -0
pgsui/cli.py +909 -0
pgsui/data_processing/__init__.py +0 -0
pgsui/data_processing/config.py +565 -0
pgsui/data_processing/containers.py +1424 -0
pgsui/data_processing/transformers.py +557 -907
pgsui/{example_data/trees → electron/app}/__init__.py +0 -0
pgsui/electron/app/__main__.py +5 -0
pgsui/electron/app/extra-resources/.gitkeep +1 -0
pgsui/electron/app/icons/icons/1024x1024.png +0 -0
pgsui/electron/app/icons/icons/128x128.png +0 -0
pgsui/electron/app/icons/icons/16x16.png +0 -0
pgsui/electron/app/icons/icons/24x24.png +0 -0
pgsui/electron/app/icons/icons/256x256.png +0 -0
pgsui/electron/app/icons/icons/32x32.png +0 -0
pgsui/electron/app/icons/icons/48x48.png +0 -0
pgsui/electron/app/icons/icons/512x512.png +0 -0
pgsui/electron/app/icons/icons/64x64.png +0 -0
pgsui/electron/app/icons/icons/icon.icns +0 -0
pgsui/electron/app/icons/icons/icon.ico +0 -0
pgsui/electron/app/main.js +227 -0
pgsui/electron/app/package-lock.json +6894 -0
pgsui/electron/app/package.json +51 -0
pgsui/electron/app/preload.js +15 -0
pgsui/electron/app/server.py +157 -0
pgsui/electron/app/ui/logo.png +0 -0
pgsui/electron/app/ui/renderer.js +131 -0
pgsui/electron/app/ui/styles.css +59 -0
pgsui/electron/app/ui/ui_shim.js +72 -0
pgsui/electron/bootstrap.py +43 -0
pgsui/electron/launch.py +57 -0
pgsui/electron/package.json +14 -0
pgsui/example_data/__init__.py +0 -0
pgsui/example_data/phylip_files/__init__.py +0 -0
pgsui/example_data/phylip_files/test.phy +0 -0
pgsui/example_data/popmaps/__init__.py +0 -0
pgsui/example_data/popmaps/{test.popmap → phylogen_nomx.popmap} +185 -99
pgsui/example_data/structure_files/__init__.py +0 -0
pgsui/example_data/structure_files/test.pops.2row.allsites.str +0 -0
pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz +0 -0
pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz.tbi +0 -0
pgsui/impute/__init__.py +0 -0
pgsui/impute/deterministic/imputers/allele_freq.py +725 -0
pgsui/impute/deterministic/imputers/mode.py +844 -0
pgsui/impute/deterministic/imputers/nmf.py +221 -0
pgsui/impute/deterministic/imputers/phylo.py +973 -0
pgsui/impute/deterministic/imputers/ref_allele.py +669 -0
pgsui/impute/supervised/__init__.py +0 -0
pgsui/impute/supervised/base.py +343 -0
pgsui/impute/{unsupervised/models/in_development → supervised/imputers}/__init__.py +0 -0
pgsui/impute/supervised/imputers/hist_gradient_boosting.py +317 -0
pgsui/impute/supervised/imputers/random_forest.py +291 -0
pgsui/impute/unsupervised/__init__.py +0 -0
pgsui/impute/unsupervised/base.py +1118 -0
pgsui/impute/unsupervised/callbacks.py +92 -262
{simulation → pgsui/impute/unsupervised/imputers}/__init__.py +0 -0
pgsui/impute/unsupervised/imputers/autoencoder.py +1285 -0
pgsui/impute/unsupervised/imputers/nlpca.py +1554 -0
pgsui/impute/unsupervised/imputers/ubp.py +1575 -0
pgsui/impute/unsupervised/imputers/vae.py +1228 -0
pgsui/impute/unsupervised/loss_functions.py +261 -0
pgsui/impute/unsupervised/models/__init__.py +0 -0
pgsui/impute/unsupervised/models/autoencoder_model.py +215 -567
pgsui/impute/unsupervised/models/nlpca_model.py +155 -394
pgsui/impute/unsupervised/models/ubp_model.py +180 -1106
pgsui/impute/unsupervised/models/vae_model.py +269 -630
pgsui/impute/unsupervised/nn_scorers.py +255 -0
pgsui/utils/__init__.py +0 -0
pgsui/utils/classification_viz.py +608 -0
pgsui/utils/logging_utils.py +22 -0
pgsui/utils/misc.py +35 -480
pgsui/utils/plotting.py +996 -829
pgsui/utils/pretty_metrics.py +290 -0
pgsui/utils/scorers.py +213 -666
pg_sui-0.2.3.dist-info/RECORD +0 -75
pg_sui-0.2.3.dist-info/top_level.txt +0 -3
pgsui/example_data/phylip_files/test_n10.phy +0 -118
pgsui/example_data/phylip_files/test_n100.phy +0 -118
pgsui/example_data/phylip_files/test_n2.phy +0 -118
pgsui/example_data/phylip_files/test_n500.phy +0 -118
pgsui/example_data/structure_files/test.nopops.1row.10sites.str +0 -117
pgsui/example_data/structure_files/test.nopops.2row.100sites.str +0 -234
pgsui/example_data/structure_files/test.nopops.2row.10sites.str +0 -234
pgsui/example_data/structure_files/test.nopops.2row.30sites.str +0 -234
pgsui/example_data/structure_files/test.nopops.2row.allsites.str +0 -234
pgsui/example_data/structure_files/test.pops.1row.10sites.str +0 -117
pgsui/example_data/structure_files/test.pops.2row.10sites.str +0 -234
pgsui/example_data/trees/test.iqtree +0 -376
pgsui/example_data/trees/test.qmat +0 -5
pgsui/example_data/trees/test.rate +0 -2033
pgsui/example_data/trees/test.tre +0 -1
pgsui/example_data/trees/test_n10.rate +0 -19
pgsui/example_data/trees/test_n100.rate +0 -109
pgsui/example_data/trees/test_n500.rate +0 -509
pgsui/example_data/trees/test_siterates.txt +0 -2024
pgsui/example_data/trees/test_siterates_n10.txt +0 -10
pgsui/example_data/trees/test_siterates_n100.txt +0 -100
pgsui/example_data/trees/test_siterates_n500.txt +0 -500
pgsui/example_data/vcf_files/test.vcf +0 -244
pgsui/example_data/vcf_files/test.vcf.gz +0 -0
pgsui/example_data/vcf_files/test.vcf.gz.tbi +0 -0
pgsui/impute/estimators.py +0 -1268
pgsui/impute/impute.py +0 -1463
pgsui/impute/simple_imputers.py +0 -1431
pgsui/impute/supervised/iterative_imputer_fixedparams.py +0 -782
pgsui/impute/supervised/iterative_imputer_gridsearch.py +0 -1024
pgsui/impute/unsupervised/keras_classifiers.py +0 -697
pgsui/impute/unsupervised/models/in_development/cnn_model.py +0 -486
pgsui/impute/unsupervised/neural_network_imputers.py +0 -1440
pgsui/impute/unsupervised/neural_network_methods.py +0 -1395
pgsui/pg_sui.py +0 -261
pgsui/utils/sequence_tools.py +0 -407
simulation/sim_benchmarks.py +0 -333
simulation/sim_treeparams.py +0 -475
test/__init__.py +0 -0
test/pg_sui_simtest.py +0 -215
test/pg_sui_testing.py +0 -523
test/test.py +0 -151
test/test_pgsui.py +0 -374
test/test_tkc.py +0 -185

pg_sui-0.2.3.dist-info/RECORD DELETED Viewed

@@ -1,75 +0,0 @@
-pgsui/__init__.py,sha256=x9qoV6vULdMKnvpieT2OTwykUj1JlMn9F9WOtnuSq6s,1449
-pgsui/pg_sui.py,sha256=TKc_5XAOoAjUEVYZm4UmKkIccgnY9cgooOJAPmcq3Hk,7471
-pgsui/data_processing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/data_processing/transformers.py,sha256=2ZdsFU7OtxUrlwjPk6P7pu0he9TBiAJ1meiYLpfPWJo,42452
-pgsui/example_data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/example_data/phylip_files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/example_data/phylip_files/test.phy,sha256=LEq2Q3hjmPVDP2uF1Ai8OH2If5Y58ny-GRfuXa3l61c,238537
-pgsui/example_data/phylip_files/test_n10.phy,sha256=sgrpekxj0wIlbJymWjULqoPdrY5ehKW5nzHnK710NkU,2897
-pgsui/example_data/phylip_files/test_n100.phy,sha256=LqXLINViOlDpmer2QWyu_Rd_GrCxAnsg6NgogKatnY4,13428
-pgsui/example_data/phylip_files/test_n2.phy,sha256=cQxEWCeiuxQluvAt1xG-G06UcNgJH2ibaabJJMD019o,1960
-pgsui/example_data/phylip_files/test_n500.phy,sha256=C1_y8CxP6Z5vYfY4nwckxdOL2pXKjLEoYmB_FIPW0xY,60228
-pgsui/example_data/popmaps/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/example_data/popmaps/test.popmap,sha256=20sFUh3toDNO5wnNuv3FUEBUDkHosMeSclECCDtW354,1954
-pgsui/example_data/structure_files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/example_data/structure_files/test.nopops.1row.10sites.str,sha256=BxlTqWRXjVJFAkA3mnmicMK69AjoBY57R2gkDDo2dwQ,6375
-pgsui/example_data/structure_files/test.nopops.2row.100sites.str,sha256=BzYura7k1O1Qv_FPz57IuuiWMwPV5DU6RPkJhKYdbhs,50808
-pgsui/example_data/structure_files/test.nopops.2row.10sites.str,sha256=q0fkZJN9vvHbUsUnTaNLWA4eEYqcZo_4VRNDAhEqACg,7978
-pgsui/example_data/structure_files/test.nopops.2row.30sites.str,sha256=OIkbvM9GDvp9ZVbmRS6QE1xkTLjsP6NlWALy9u4nCDo,17512
-pgsui/example_data/structure_files/test.nopops.2row.allsites.str,sha256=A4oa4lNQicJmmLpsIwEFCOxJ08_jVusHQjEjIBot7ks,967410
-pgsui/example_data/structure_files/test.pops.1row.10sites.str,sha256=bg3n0oMIj8eXTbZn4T89kv0Jb6mWDIHB5jQIrwVGbZA,6609
-pgsui/example_data/structure_files/test.pops.2row.10sites.str,sha256=DDTnKtLVIJzaUL9ufab4cw1OySnkQ0-4nQD_x051OeI,8446
-pgsui/example_data/structure_files/test.pops.2row.allsites.str,sha256=fbmLcOUQSKyy71A77NPtJJMLSOkquPky0WiPlV4qHhA,967878
-pgsui/example_data/trees/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/example_data/trees/test.iqtree,sha256=vcWGWdXys6v5zmCogS761W1AplkqDuXD9f3gzzcLxOw,25575
-pgsui/example_data/trees/test.qmat,sha256=WDFO2YboGWYMKJeOq5etBRvB19IHsBQhNzWoi7Z3irg,134
-pgsui/example_data/trees/test.rate,sha256=5ROH2y26oWTveeEEx4UVKeTd6SuNN5jIo2HBaOdgH-U,46013
-pgsui/example_data/trees/test.tre,sha256=ZwH7j5hJidraGfjttBNOZ_AyDm6flTesONs4cfT8gbQ,4696
-pgsui/example_data/trees/test_n10.rate,sha256=QntpWWt0nS3LmAIdnKMv501rJ2nwoIaBFRL9hiwdfgw,678
-pgsui/example_data/trees/test_n100.rate,sha256=OSsJsWVwfw1e_LE16BFbFppIrXYyC19mNjk3XYQaC6s,2577
-pgsui/example_data/trees/test_n500.rate,sha256=ZtROaOo93eQ4AWi8dR_5blBMoQ2kcK-hfQ7iEIWHaLA,11387
-pgsui/example_data/trees/test_siterates.txt,sha256=90GBD6ay6G-e-PMPGRZv9oihViwTjtRPycbmlekxKTI,16235
-pgsui/example_data/trees/test_siterates_n10.txt,sha256=sBH770qAI5x-8aN-o4EGP784UFRcSvIBMUC8oUrFiwI,80
-pgsui/example_data/trees/test_siterates_n100.txt,sha256=9kmDNbjHBQIFVrdmwTmU0bTqIFj4KfgWzsVjR2PZwYI,804
-pgsui/example_data/trees/test_siterates_n500.txt,sha256=cqLjXZtYSiK5j3vVhX6tMKbR9ngxhOw9Q6FtRCDRAko,4008
-pgsui/example_data/vcf_files/test.vcf,sha256=xF7VaqnmHSNauW3xCIMpWw1yIXa6RRAbizg66SzVUHM,380243
-pgsui/example_data/vcf_files/test.vcf.gz,sha256=g49C0ycJ4HAjT7oqlq9sV2q1NmZdCYkp5jT33RRveio,72705
-pgsui/example_data/vcf_files/test.vcf.gz.tbi,sha256=zxitJWi7Vw1AdO4yiX5y-3NCRxiTUi0TfOcxR8RVzpI,2581
-pgsui/impute/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/impute/estimators.py,sha256=-V5gnNtkUr9-uUDpfgcfLXlNqe4nnrlwPTFR5DcNbug,125036
-pgsui/impute/impute.py,sha256=12zEX_-R5OLXEkhnfsqmZWvM3TB4HHun5XF-z8wN1rw,51210
-pgsui/impute/simple_imputers.py,sha256=4fxM9l7310y07fUcXyneesmNUh3eYbPvFWFRZom_3HU,53283
-pgsui/impute/supervised/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/impute/supervised/iterative_imputer_fixedparams.py,sha256=PH6Mc7J8LJmUhnW8x43WudhorBSNg1Uxa7ZKBkMp5BQ,35075
-pgsui/impute/supervised/iterative_imputer_gridsearch.py,sha256=ELW4cWX3QTU_1dI_eqMZoVG8vqFnLCqy41WQ0C1o4wU,45443
-pgsui/impute/unsupervised/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/impute/unsupervised/callbacks.py,sha256=qmHrIyYL_YBdntrhlZMAED29JGjmgZFsnB1ydkyVjnQ,9682
-pgsui/impute/unsupervised/keras_classifiers.py,sha256=dSM7CrH86s6xTvVmdyEmTjch1g9aRszspgxExTRptjM,29483
-pgsui/impute/unsupervised/neural_network_imputers.py,sha256=Hkj8rdo_G1HbYrKbJJ9oeYXAsOH1PLJYZKJt_eQuFYw,52292
-pgsui/impute/unsupervised/neural_network_methods.py,sha256=ueFUQ9eh9xUUfep3myTuEz1ZDrdDZ5R_4bpQnwK-GsQ,50830
-pgsui/impute/unsupervised/models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/impute/unsupervised/models/autoencoder_model.py,sha256=5HXqNr4d86Or1el_1eKw4PTKsik3t9K2dQ2M95a-VY0,20161
-pgsui/impute/unsupervised/models/nlpca_model.py,sha256=6yRDO6aCkjGjdbrI2FOJvyDdksArsRwCSunb2NSXd1k,14501
-pgsui/impute/unsupervised/models/ubp_model.py,sha256=CEVvGusqONpTdF4HpyOSA_WQLH0sNQ2lGfUKLL5NHPY,37879
-pgsui/impute/unsupervised/models/vae_model.py,sha256=ZLfLqLIsYqV2_nHJ3WXAWk4v_mzqD0p8oiS-jm3legY,22338
-pgsui/impute/unsupervised/models/in_development/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/impute/unsupervised/models/in_development/cnn_model.py,sha256=nNMmGev5PmLcUUm44_bnDcx1iO0_FeaqllSCpuL2ykU,15036
-pgsui/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pgsui/utils/misc.py,sha256=dXPmjH0boW9f5HY0l17v_u42xl_ZGHKmLEL3efsMVWA,15705
-pgsui/utils/plotting.py,sha256=WIoPoFGR4sqKNvjF9ZBehRLdKWt5H6LUr0QxnOTJ8V8,33748
-pgsui/utils/scorers.py,sha256=UrX3gM5FkK4UAUqd9JNNAWPBUWvIDmImIrPm8pRO6fM,26862
-pgsui/utils/sequence_tools.py,sha256=5WY_gEov2AVSG5j4PEPLtI8OFDaBmGi7U6SDqK_dplc,10143
-simulation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-simulation/sim_benchmarks.py,sha256=lA5o1qIqG7lbN56RYhx1crc73e0c-z2C5FtuNDntFBM,11345
-simulation/sim_treeparams.py,sha256=Crgt9SxuBLzrqsnuVFlvPvU5g7tIt3q0Sv_-nge7tfc,13793
-test/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-test/pg_sui_simtest.py,sha256=yeQA8kEvGUisvGGYUuv47zK8aw6wTkEScjfjQiociMc,6024
-test/pg_sui_testing.py,sha256=zJLeUiE-swFI-NrUfpsNaxBoWIQCDNnj09RsLOigqNw,15871
-test/test.py,sha256=FEylSUFKXGPusNYF34y5xqPCXeV-d94TLyB2LR8njNU,5034
-test/test_pgsui.py,sha256=rcAoFQSvCAEe0ADXZ7xDUQt-PuvEGEizWFu3mqV3728,14310
-test/test_tkc.py,sha256=P9O956q9Gt_nnJ3CLBpq4cSXLNmN94oA-mUjRngkFgg,5867
-pg_sui-0.2.3.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-pg_sui-0.2.3.dist-info/METADATA,sha256=ORxQjOBL8SrDxXZ3ViOTTquvK0GqQCvkITCk8Uc3-3g,12725
-pg_sui-0.2.3.dist-info/WHEEL,sha256=AtBG6SXL3KF_v0NxLf0ehyVOh0cold-JbJYXNGorC6Q,92
-pg_sui-0.2.3.dist-info/top_level.txt,sha256=jxcAQq4Ov-ynoE-TOLYXKd8OJv4gQjZ59ssYt3tbANA,22
-pg_sui-0.2.3.dist-info/RECORD,,

pg_sui-0.2.3.dist-info/top_level.txt DELETED Viewed

@@ -1,3 +0,0 @@
-pgsui
-simulation
-test

pgsui/example_data/phylip_files/test_n10.phy DELETED Viewed

@@ -1,118 +0,0 @@
-117 10
-GUFL_BXGU36_AA14	TGTTACCGAT
-GUFL_BX626	YGTNACCGRN
-GUFL_BXGU65_AA39	TGTWACCGAT
-GUFL_BX684	TGTTACCGAT
-GUFL_BX504	TGTTACCNAT
-GUFL_BX503	NGTTACCGRT
-GUFL_BXGU32	CGTTACCGAT
-GUFL_BXGU63_AA37	YGTTACCART
-GUFL_BXGU35_AA13	TGTTACCAAT
-GUFL_BXGU61_U57	TGTTACCNAT
-GUFL_BXGU62_AA36	TGTTACCAAT
-GUFL_BX685	TGTTACCGAK
-GUFL_BXGU33	TGTTACCGAT
-DSAZ_BX1213	TGTTACCGGT
-DSNM_BXDS02	TGTTACCGGT
-ONWI_BX489	TGTTACCGAT
-ONWI_BX493	TGTTACCGGT
-ONTX_BXON46_153	TRTTNCCAGT
-ONNE_BXON58_433x2	TGTTACCGGT
-ONWI_BX495	TGTTACCGGT
-ONWI_BX491	TGTTACCGRT
-ONWI_BX497	TGTTACCGGT
-ONCO_BX601	TGTTACCGGT
-ONCO_BX588	TGTTACCGGT
-ONWI_BX486	TGTTACCGGT
-ONTX_BXON45_150	TRTTACCGGT
-ONCO_BX580	TNNTACCGGT
-ONWI_BX490	TGTTACCGGT
-ONCO_BX602	TGTTACCGGT
-ONKS_BXON61_133	TGYTACCGGT
-FLFL_BXFL01	TGTTACCGRT
-FLFL_BX683	TGTTACCGAT
-TTLA_BXTT35_1486	TGTTGCCGGT
-TTAR_BX507	TGTTACCGGT
-TTTX_BX227	TGTTRCYGGT
-TTTX_BX225	TGTTACCGGT
-TTLA_BXTT34_1482	TGTTACCGGT
-TTLA_BXTT36_1491	TGYTRCCAGN
-TTLA_BXTT37_1492	TGTTRCCGGT
-TTAR_BX987	TGNTACCNGT
-TTLA_BXTT38_1493	TGTTRCCGGT
-TTTX_BX222	NGYTRYYGGT
-TTLA_BX421	TGTTACCRGT
-TTKS_BXTT20_78	TGYTGCCAGT
-TTLA_BXTT13	TGTTRCCRGT
-TTAR_BX984	TNTTACCGGT
-TTLA_BX422	TGTTACCGGT
-TTLA_BXTT39_1498	TNTTACCRGT
-TTTX_BX223	TGTTACCGGT
-TTTX_BX228	TRNTACCRGT
-MXMX_BX1195	TGYTACCGAT
-MXMX_BX1194	TGTTACCGAT
-MXMX_BX1196	TGYTACCGAT
-GUMS_BXGU68_AA42	TGTTACCGGT
-GUMS_BXGU53_T72	TGTTACCAGT
-GUMS_BXGU78_AA52	TGTTACCRRT
-GUMS_BXGU75_AA49	NGTTACCGRT
-GUMS_BXGU76_AA50	TGTTACCRGT
-GUMS_BXGU69_AA43	YGTTACCRRT
-GUMS_BXGU77_AA51	TGTTACCGGT
-GUMS_BXGU67_AA41	TGTTACCNRT
-GUMS_BXGU74_AA48	TGTTACCANT
-GUMS_BXGU73_AA47	TGTTACCNGT
-GUMS_BXGU50_T69	TGTTACCGGT
-GUMS_BXGU48_T62	YGTTACCGGT
-GUMS_BXGU56_T83	TGNTACCGRT
-GUMS_BXGU58_T92	TGNTACCNGT
-GUMS_BXGU54_T73	TGTTACCGGT
-GUMS_BXGU44_T56	TGTTACCGGT
-GUMS_BX200	YGNTACCGGT
-GUMS_BXGU79_AA73	TGTTACCAGT
-GUMS_BXGU49_T66	TGTTACCGGT
-GUMS_BXGU72_AA46	TGTTACCGGT
-GUMS_BXGU71_AA45	TGNTACCGGT
-GUMS_BXGU43_T55	TGYTAYCGRT
-GUMS_BXGU47_T61	TGTTRCCRGT
-GUMS_BXGU45_T59	TGTTACCRGT
-EASC_BXEA43_1307	TGTTACCGAN
-EAGA_BXEA49_564	TGNTANCGGT
-EAGA_BX660	YGTTACCGGT
-EAAL_BXEA27	TGTTACCGAT
-TCAL_BXTC63	TGTTRCCGGT
-TCAL_BX612	TGTTACCRNN
-TCAL_BXTC93	TGTTACCNAT
-EAGA_BXEA35_666	NNTTACCGGT
-EASC_BX1108	TGTTACCAGT
-EAGA_BXEA17	TGTTAYCRGT
-EAGA_BXEA34_665	TGTTACCGAT
-EASC_BXEA42_1306	TGTTACCGGT
-TCAL_BX279	TGTTACCGGT
-EAVA_BX320	NGTWACCAAT
-EAGA_BXEA21	TGTTACCRNT
-EATN_BXEA02_36x2	TGTTACCNAT
-EAVA_BX101	TGTTACCRGT
-EASC_BXEA41_1305	TGTTACCNAT
-EAGA_BXEA25	TGTTACCGAK
-TCAL_BXTC92	TGTTAYCGGT
-EAGA_BX346	TGTTACCAGT
-EAVA_BX321	TGTTACCRAT
-EAGA_BX472	YGTTRCCGAT
-EASC_BXEA40_1304	TGTTAYCRAT
-EASC_BX1115	TGTTRCCGAT
-EAGA_BXEA32_662	TGTTAYCGAT
-TCAL_BX273	TGTTACCGNN
-EASC_BX1109	TGTTACCNNT
-TCAL_BXTC80	TGTTACCNAN
-EASC_BX1110	TGYTACCGAT
-TCAL_BXTC110	TGTTACCGNT
-EAGA_BXEA31_659	TGTTACCGRT
-EASC_BX1112	TGTTACCGGT
-EAGA_BX301	TGTTACCGGT
-EAGA_BXEA15_654	YGTTACCGGN
-EASC_BX1114	TGTTACCGRN
-TCGA_BX344	YGTWACCART
-EAGA_BXEA33_663	TNTTACCRAT
-CHCH_BX1191	TGTTACCGGT
-CHCH_BX1193	TGTTACCGGT

pgsui/example_data/phylip_files/test_n100.phy DELETED Viewed

@@ -1,118 +0,0 @@
-117 100
-GUFL_BXGU36_AA14	GCGRGCCTCACCGGGTTGCSCNGAGACAGAKRAAGACCAGCGCCGATCCTGGNTCTNCNCCTGGAGAGTTAGCACCCCCACCCGTARTGATGTTACCGAT
-GUFL_BX626	GCGGGCCTNGCCGGGTTGCCCGGAGACAGANRARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTNGCANCCCCACCCGTAGTGAYGTNACCGRN
-GUFL_BXGU65_AA39	GCGGGCCTCGGCGGGTTGCCCGGAGNNAGATGAGGACCAGYGMCGATCCTGGCTCTGCCCCTGGANAGTTAGCACCCCCAYCCGTAGTGATGTWACCGAT
-GUFL_BX684	GCNGGCCTCNSCGGGTTGCNCGGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCNCTGGAGAGTTNGCACCCCCAYCCGNAGTGATGTTACCGAT
-GUFL_BX504	GCGGGCCTCGSCGGGTTGCCCGGAGACAGATGAGGACCANCGMCGATNCTGGCTCNGCCCCTGGAGAGTTAGCACCCCCAYCCNTAGTGATGTTACCNAT
-GUFL_BX503	GCGGGCCTNGSCNGGTTGCCCKGAGACAGAGGAGGACCAGCGCCGATCCTGGCTCTGCCNCTGGAGANTTAGCACNCCCAYCCGTAGKGANGTTACCGRT
-GUFL_BXGU32	GCGGGCCTNGSCGGGTTGCCNGGAGACAGAKGAGGACCANCGCCGATCCTGGCTCTGCCCCTGGAGAGTTNGYACCCCCAYCCGTAGTGACGTTACCGAT
-GUFL_BXGU63_AA37	GCGGGCCTCGCCNGGTTNCCCKGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGTACCCCCACCCGTAGTGAYGTTACCART
-GUFL_BXGU35_AA13	GCRGGCCTCGCCGGGNNGCCCGGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCCCTRGANAGTTAGYACNCCCATCCGTAGTGATGTTACCAAT
-GUFL_BXGU61_U57	GCGGGCCTCGSCGGGTNGCCCGGAGANAGATGAGGACCAGCGCCGATNNNGGCTCNGCCCCTGGAGAGTTAGCACCCNCAYCCGTARTGATGTTACCNAT
-GUFL_BXGU62_AA36	GCGGGCCTCGNCGGGTTGCNCGGAKACAGAKGAGGACCAGCNCCGATCCNGGCTCNGCCCCTGGAGAGTTAGYACCCCCACCCGTANKGATGTTACCAAT
-GUFL_BX685	GNGRGCCTCNCCGGGTYGCCCKGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGANTTAGCACCCCCACCCGTAGTGATGTTACCGAK
-GUFL_BXGU33	GCGGGCCTCNCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCNTGGAGANTTAGCACCCCCAYCCGTAGTGATGTTACCGAT
-DSAZ_BX1213	GCGGGCCTCGCTGGTTTGCCCGGAGACAKATGAGAACCAGCGCCGATCCTGGTWCTGCCCCTGGAGAGTTAGCACCCCYATCCGTAGTGATGTTACCGGT
-DSNM_BXDS02	GCGGGCCTCGCTGGTTTGCCCGGAGACAKMTGARAACCAGCGCCGATCCTGGYTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGMTGTTACCGGT
-ONWI_BX489	GCGGGCTTCGCTGGTTNGCCCGGAGANMGATGAAAACCAGCGCCGATCCTRGTTCTGCCCCTGGAGAGTTAGNACCCCCATCCGTAGTGATGTTACCGAT
-ONWI_BX493	RCGGGCYTCGCTGNTTTGCCCGGAGACAGMTGAAAACCAGCGCCGATCCTGNTTCTGCCCCTGGNGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
-ONTX_BXON46_153	GCGGGCCTCGCTGGTTTGCCCGGAGACAGMTRAGAACCAGCGCCGATCCTGGTTCTRCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATRTTNCCAGT
-ONNE_BXON58_433x2	GCGGGCCTCGCNGGTNNGCCCGGAGACMGCTGAGAACCAGCGCCGATCCTGGTTCTGCNCCTGGAGAGTTNGCANCCCCATCCGTAGTGATGTTACCGGT
-ONWI_BX495	GCGGGCYTCGCTGGTTTGCCCGGAGACAGATGAAAACCAGCGCCGATCCTGGTTCTGCCCCTGGRGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
-ONWI_BX491	GCGGGCYTCGCTGGTTTGCCCGGAGACAGMTGAAAACCAGCGCCGNTCCTRGTWCTGCCCCTGGANAGTTAGCACCCCCATCCGTAGTGATGTTACCGRT
-ONWI_BX497	RCGGGCCTCGCTGGTTTGCCCGGAGACAKMTRARAACCAGCGCCGATCCTGGTTCTGCCCCTGGRGAGTTAGNACCNCCATCCGTAGTGATGTTACCGGT
-ONCO_BX601	GCGGGCCTCGCTGGTTTGCCCGGAGNCAGCTGAGAACCAGCGCCRATCCTGGTTCTGCCCCTNGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
-ONCO_BX588	RCGGGCCTCGCTGNTTNGNCCGGAGACAGATGAGAACCAGCGCCAATCCTGGTTCTGCCCCTGGAGAGNTAGCACCCCCAYCCGTAGTGATGTTACCGGT
-ONWI_BX486	GNGGGCCTCGCTGGTTTGCCCGNAGACAGMTGARAACCAGCGCCGATCCTGGTTCTGNCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
-ONTX_BXON45_150	ACGGGCCTCGCTGGTTTGCCCGGAGACMGANGAAAACCAGCGCCGATCCTNNTTCTGCCCCTGGANAGTTAGCACCCCCANCCGTAGTGMTRTTACCGGT
-ONCO_BX580	GCGGGCCTCNCTGGTTTGCCCGGAGACAKMTGAGAACCAGCGCCRATYCTGGTTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATNNTACCGGT
-ONWI_BX490	RCGGGCCTCGNTGNTTTGCCCGGAGACAGMTGAAAACCAGCGCCGATCCTAGTWCTRCCCCTGGRGAGTTAGNNCCCCCATCCGTAGTGATGTTACCGGT
-ONCO_BX602	RNGGGCCTCGCTGGTTTGCCCGNAGACAKMTGAGAACCAGCGCCGATYCTGGTTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
-ONKS_BXON61_133	GCGGGCYTCGCTGGTTTGCCCGGAGACMGMTGARAACCAGCGCCGATCCTGGTWCTGCCCCTGGAGAGTTAGCACCCCYAYCCGTAGTGATGYTACCGGT
-FLFL_BXFL01	GCRGGCCCCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACTCCCACMCGTAGTGATGTTACCGRT
-FLFL_BX683	GCRGGCCCCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCTTGGCTCTGCCCCTGGAGAGTTAGCACTCCCACMCGTAGTGATGTTACCGAT
-TTLA_BXTT35_1486	GNGGGCCTCGNCGGGTTGNSCGGAGACAGATGAGGACCASYGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCATCYCCATCCNTAGKGNTGTTGCCGGT
-TTAR_BX507	GCGGGCCTCGNCGGGNTGCCCGGAGACAGATRAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCGNAGTGATGTTACCGGT
-TTTX_BX227	GCGGGCCTCGCCGGGTTGCSCGGAGACAGATRARGWCCAGCGCYGATCCTGGCWCTGCCCCTRGAGAGTTARCACCCCCATCCGTAGTGATGTTRCYGGT
-TTTX_BX225	GTGGGNCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCGGT
-TTLA_BXTT34_1482	GCGRGCYTCGCCGGGTTGCSMKGAGACAGNTGAGGWCCAGCGCCGANCCTGGCTCNGCCCCTGGARAGTTAGCACYCCCMTCCGTAGTGATGTTACCGGT
-TTLA_BXTT36_1491	GNGGGCCTCGCCGGGTTGCCCGGAGACAGATGAAGACCAGCGCCGATCCTGGCTCTGCNCCTGGAGAGTTAGCANCYCCMTCCGTAGTGATGYTRCCAGN
-TTLA_BXTT37_1492	GNGAGCCTCGCCGGGTTGCCCTGAGACAGATGAGGWCCAGCGCCGATCCTGNCTCTGCCCCTRGAGAGTTAGCACCCCCACCCGTAGTGATGTTRCCGGT
-TTAR_BX987	GCGGGCCTCNCCGGGTTGCCCGGAGACAGATGAAGACCAGCGCCGATYCTGGCTCTGCCCCTGGAGAGTTARCACCCCCAYCCGTAGTGATGNTACCNGT
-TTLA_BXTT38_1493	GCGRGCYTSGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGWWCCTGGNTCTGCCCCTGGAGAGTTNGNACCCCCATCCGTAGTGATGTTRCCGGT
-TTTX_BX222	GCGRGCYTCGCCGGGTTGCCCGGAGACAGATGAAGACCASCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGANGYTRYYGGT
-TTLA_BX421	GCGRGCCTCNCCGGGTTGCCCKGAGACAGATGAGGWCYAGCGCCGATCCTGNCTCTGYCCCTGGAGAGTTAGCACCNCCMTCCGNAGTGATGTTACCRGT
-TTKS_BXTT20_78	GCGGGCCTCGCCGGGTTGCCCNGAGACAGATGAGGWCCAGCGCCGWTCCTGGCTCTGCCCCTGRAGAGTTAGCACCCCCACCCGTAGTGATGYTGCCAGT
-TTLA_BXTT13	GCGAGCCTSGCNRGGTTRCCCGGAGACANATGAGGACYAGCGCCGATCCTGGCTCTGYCCCTRGAGAGTTARCACCYCCAYCCSTAGTGATGTTRCCRGT
-TTAR_BX984	GCGGGCCTCGNCGGGTTGCCCGGAGNCANATGAAGACYAGCGCCGATNCTGGCWCTGCCNCTGGAGAGTTAGCACCCCCACCCGTAGTGATNTTACCGGT
-TTLA_BX422	GCGRGCCTCGCCGGGTTGCCCGGAGACANATGAGGACCAGCGCCGATCCTGGCTCTGCCNCTRGAGAGTTAGCACCYNCATCCGTAGTGATGTTACCGGT
-TTLA_BXTT39_1498	GCGGGNCTCGCCGGGTTGCGCKGAGACAGATGAGGACCASCGCCGATCCTGGCWCTGCCCCTGGAGANTTWGCACNYCCAYCCGTAGTGATNTTACCRGT
-TTTX_BX223	GCGGGCCTCGCCGGGTTGCGCGGAGACAGATGANGACCAGCGCCGATCCTGGCTCTGCCCCTRGARAGTTAGCACCCCCNYCCGTAGTGATGTTACCGGT
-TTTX_BX228	GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGAGGACCASCGCCGNACCTGGCACTGYCCCTGGAGAGTTWRCACNCCCACCCGTAGTGATRNTACCRGT
-MXMX_BX1195	GCGGGCCTCGCCGGGTTGYCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCGTAGTGATGYTACCGAT
-MXMX_BX1194	GCGGGCCTCGCCGGGTTGYCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGAT
-MXMX_BX1196	GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGYTACCGAT
-GUMS_BXGU68_AA42	GCGGGCCTCGCCGRGTTGCCCKGAGWCAGATGAGGACYAGCGCCGNTCCTGGCTCTGCCCCTGGAGAGNTAGCACCCCCAYCCGTAGTGATGTTACCGGT
-GUMS_BXGU53_T72	GCGGGCCTCGSCGGGTTNCCCGGAGACAGATGRGGACCAGCGCYGATCCWGGCTCNGCNCCTGGAGAKTTWGCACCCNCACCYGTAGTGATGTTACCAGT
-GUMS_BXGU78_AA52	GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGAGGACYAGCGCCGATCCWGGCTCTGNNCCTGRAGAGTTAGCACNCCCATCCGCAGTGATGTTACCRRT
-GUMS_BXGU75_AA49	GCGGGCCTCGCCRGGTTGCCCTGAGACAGATGARGACCAGCGCCGATCCNGGCTCWGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGANGTTACCGRT
-GUMS_BXGU76_AA50	GCGGGCCTCGCCGRGTTGCCCKRAGACAGATGAGGACYAGCGCCGATCCAGGCTCTGCCCCTGGAGAKNTAGCACCCCCATCCGTAGTGATGTTACCRGT
-GUMS_BXGU69_AA43	GCGGGCCTCNCCGGGTTGCCCKGRGACAGATGARGACCAGCGCCGATCCWGGCTCNGNCCYTRGAGAGTTAGCACNCCCAYCCGTAGKGAYGTTACCRRT
-GUMS_BXGU77_AA51	GCGGGCCTCGCCGGGTTGCNCKGRGACAGATGAGGACCAGCGCCGATCCWGGCTCTGCCCCTGRAGAGTKAGNACCCCCATCCGYAGTGATGTTACCGGT
-GUMS_BXGU67_AA41	GCGGGCCTCGCCGGGTTGCCCKGAGACAGAKGAGGACCAGCGCCGATNCWGGCTCNGCCCCTGGAGAGTTAGCACNCNCACCCGTAGTGATGTTACCNRT
-GUMS_BXGU74_AA48	GCGGNCCTCGCCGGGTTGCCNTGAGANAGATGAGGACCAGCGCCGATCCNGGCTCTGNCCCTGGANAGTTAGCANCCCCATCCGTAGKGATGTTACCANT
-GUMS_BXGU73_AA47	GCGGGCCTCGCCGGGTTGCCCKAAGACAGAKGAGGACCAGCGCCGATCCWGGCTCTGCCCCTRGAGAGTKAGNACCCCCAYCCGTAGKGATGTTACCNGT
-GUMS_BXGU50_T69	GCGGGCCTCGSCGGGTTGCCCKGAGACAGATGARGACCAGCGCCGATCNWGGCTCTGCCYCTGGANAGTTAGCACCCCCACCCGTAGTGATGTTACCGGT
-GUMS_BXGU48_T62	GCGGGCCTCGCCGGGYNGCCCKGAGAMAGAKGARGACCAGCGCCGANCNAGGNTCAGCCCCTGGAGAGTTAGCACCCCCACCYGTAGTGAYGTTACCGGT
-GUMS_BXGU56_T83	GCGGGCCTCGCCGGGTTGCCCKGAGACNGATGARGACYAGCGCCGATCCTGGCTCTGCCYCTGGAGAGTTAGCACCCNCAYCCGTAGTGATGNTACCGRT
-GUMS_BXGU58_T92	GCGGGCCTCGCCGGGTTGCNCKGAGACAGATGAGGACCAGCNCCGATCCNGGCTCTGCCCCTGGAGAGTTNGCNCCCCCACCCGTAGTGATGNTACCNGT
-GUMS_BXGU54_T73	GCGGGCCTCNCCRGGTNGCCMKGAGANAGNTGAGGNCCAGCGCCGATCCNGGCTCTGCCCCTGGANAGTTNGNANCCCCATCCGTAGTGATGTTACCGGT
-GUMS_BXGU44_T56	GCGGGCCTCGCCGGGTTGCCCKGAGACAGAKGRRGAYCAGCGCCGATCCNGGCTCTGCCCCTGGAGAGTKAGCACCCNCAYCCGTAGTCATGTTACCGGT
-GUMS_BX200	GCGGGCCTCGCCGGGTTGCCCTGAGACAGATGAGGACCAGCGCCGATCCWGGCTCTGCCCCTGGANAGTTNGCACCCCCAYCCGTAGTGAYGNTACCGGT
-GUMS_BXGU79_AA73	GCGGGCCTCGCCGGGTTGCCMKGAGACAGAGNAGGACCAGCGCCGATNCWGGCTCTGCCCCTRRAGAGTKNGNACCCCCAYCCGTAGTGATGTTACCAGT
-GUMS_BXGU49_T66	GCGGGCCTCGCCGRGTTGCCCNGAGAMAGATRARGACCAGCGCCGWNCCWGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGGT
-GUMS_BXGU72_AA46	GCGGRCCTCGCCGGGTTGCCMKGAGACAGATGARGACCAGCGCCGATCCWGCCTCTGCCCCTGGAGAGTKAGCACCCCCAYCCGTAGTGATGTTACCGGT
-GUMS_BXGU71_AA45	GCGGGCCTCGCCGRGTNGCCNKGRGACAGATGAGGACYAGCGCCGATCCWGGCTCTGCCCCTGGAGAGNTAGCACCCNCATCCSTAGTGATGNTACCGGT
-GUMS_BXGU43_T55	GCGGGCCTCGNCGGGTTGCCCTGAGWCAGATGARGACCAGCNCCGANCCAGGCTCWGCCCCTGGNNAGTTAGNACCCCCNCCCGTAGKGATGYTAYCGRT
-GUMS_BXGU47_T61	GCGGGCCTCGCCGGGTTGCCCKGAGACAGAKGRRGAYYAGCGCCGATCCTGGCWCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTRCCRGT
-GUMS_BXGU45_T59	GCGGGCCTCNCCGGGTTGNCCNGAGACAGATGRGGACCAGCGCYGATCCAGGCWCNGNCCCTGGANAGTTAGCACCCCCACCYGTAGTGNTGTTACCRGT
-EASC_BXEA43_1307	GNGGGNCTCNNCGGGTTNNCCNGAGNNAGATGAGGACCAGCGCCGATCCTGGCTCTGNCCCTGGANAGTTNGCACCCCCACCCGTAGTGATGTTACCGAN
-EAGA_BXEA49_564	GYGRGCCTCRCCGGGTTGCCCGGAGANAGATGARGACNRGCRCCGNTCCTGGCTCTGCCCCTGNAGAGTTAGCACCCSCAYCCGTRGTGATGNTANCGGT
-EAGA_BX660	GNGGGCCTCNCCGGGTTNNCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCWCTGCCCCTNGAGAGTTAGCACCCCCAYCCGTAGTNNYGTTACCGGT
-EAAL_BXEA27	GCGRGNCTCGCCGGGYTGCCCKGAKACAGATGAGGACCAGCGCCGATCCTGGCWCTGCCCCTGGAGANTTNGCACCCSCAYCCGTAGTGATGTTACCGAT
-TCAL_BXTC63	GCGGGCCTCGCCGGGTTGCCCKGAGACAGATGAGGACCAGCGCCGANCCTGGCTCTGNCCCTGGAGAGTTAGCACCCGCACCCGTAGTGATGTTRCCGGT
-TCAL_BX612	GNGGGCCTCNCCGGGTTNNCCKGAGACAGAKGAGGACCAGCNCNGATCCTGGCTCTGCCCCTGGAGANTTAGCACCCSCAYCCGTAGKGNTGTTACCRNN
-TCAL_BXTC93	GCRGRCCTCNCCGGGTTGCCCGGAGACAGATRAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCYGTAGTGATGTTACCNAT
-EAGA_BXEA35_666	GCGRGCCTCNSCGGGNNNCCCNGAGACAGNTGAAGACCAGCGCCGATCCTGGCWCNNNCCCTGGAGAGTTAGCANNCNCACCCGTAGTNANNTTACCGGT
-EASC_BX1108	GCGRGCCTCGCCGGGTTGCCCGGAGACAGATRARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCSTRNTGATGTTACCAGT
-EAGA_BXEA17	GCGRGCCTCGSCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGNTCCTGGCTCTGNCCCKGGAGAGTTAGCACCCCCAYCYGTAGTGATGTTAYCRGT
-EAGA_BXEA34_665	GCGRGCCTCGSCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGNTNRCACCCCCAYCCGTRGTGATGTTACCGAT
-EASC_BXEA42_1306	GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGANAGTTAGCANNCSCAYCCGTAGTGATGTTACCGGT
-TCAL_BX279	GCGRGCCTCRCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCWCCCSCATCCGTAGTGNTGTTACCGGT
-EAVA_BX320	GNGGGCCTCGCCGGGTTGCNCGGAGANAGATGAGGACCAGCGCCGATCCTGGCTYTGNCCCTGGAGAGTTAGCACCCCCACCCGTAGTGANGTWACCAAT
-EAGA_BXEA21	GCGGGCCTCGCCGGGTTGCCMGGAGACAGATGARGACCAGCGCCGATCCTGNCTNTGCCCCKGGAGAGTTAGCACCCCCAYCCGTAGTGATGTTACCRNT
-EATN_BXEA02_36x2	GCGGGCCTCGCCGGGTYNCCCGGAGACAGATGNGGACCAGCNCNGATCCTGGNTCTGNCCNTGGAGAGTTNGCNCCCNCANCCGTAGTGATGTTACCNAT
-EAVA_BX101	GCGGGCCTCGSCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCYCCTGGAGAGTTAGCACCCCCAYCYGTAGTGATGTTACCRGT
-EASC_BXEA41_1305	GCRRGCCTCNCCGGGTNGCCCGGAGACAGATGARGNCCAGCGCCGATCCTGGCWCTGCCCYTGGANAGTTAGCACCCCCATCCGTAGTGATGTTACCNAT
-EAGA_BXEA25	GCGGGNCTNNNCGGGTTGCCCKGAGACAGATGAGNACCAGCGCCGWTNCTGGCTNTGNCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGAK
-TCAL_BXTC92	GCGRGNCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCNCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTAYCGGT
-EAGA_BX346	GCGGGCCTCGCCGGGTTGCCCGGAKACAGATGAGGACCRGCGCCGATCCTGGCTYNGNCCCTGGANAGTTAGCWCCCCCACCCGTAGTGATGTTACCAGT
-EAVA_BX321	GCGGGCCTCGCCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCYCCTGGAGAGTTAGCACCCSCAYCCGTAGTGATGTTACCRAT
-EAGA_BX472	GCGRGCCTCGCCGGGTTGCNCGGAGACAGATGAGGACCAGCNCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGKGAYGTTRCCGAT
-EASC_BXEA40_1304	GCGRGCCTCGCCGGGTTGCCCNGAGACAGATGAGGACCAGCGCCGATCCNGGCTCTGCCCCTGGANAGTTAGCACCCSCACCCGTAGTGATGTTAYCRAT
-EASC_BX1115	GCGGGCCTNGCCGGGTTGCCCGGAGACAGATGRRGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGRGTTAGCACCCCCACCCSTAGTNATGTTRCCGAT
-EAGA_BXEA32_662	GCGAGCCTCGSCGGGTTGCCCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCNCCTGGNGAGGTAGCACCCCCACCCGTAGTGATGTTAYCGAT
-TCAL_BX273	GCGGGCCTNGSCGGGTTGCCCGGAGACANATGAGGACCAGCACCGATCCTGGCTCTGCCNCTGGAGAGTTAGCANCCCCACCCGTAGTGATGTTACCGNN
-EASC_BX1109	GCGGGNCTNNCCGGGTTNCCCKGAGACAGATGAGGACCAGCNCCGWTCCTGGCWNTGCCCCTGGAGAGTTNGCACCCCCATCCGNAGTGATGTTACCNNT
-TCAL_BXTC80	GCARGCCTCGCCGGGTTGCCCGGAGACAGAKNAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCATCCGTAGTGATGTTACCNAN
-EASC_BX1110	GCGGRCCTCGCCGGGTTGCCCGGAGANAGAKGARGACCAGCGCCGATCCTGGCTCNGCCCCTGGANAGTTAGCACCCCCMYCCGTAGTGATGYTACCGAT
-TCAL_BXTC110	GCGRGCCTCGCCGGGTTGCNCGGAGACAGAKGAAGACCAGCGCCGATCCTGGCTCTGCCNCTGGAGAGTTAGCACCCCCACCCGTAGTGATGTTACCGNT
-EAGA_BXEA31_659	GCGRGCCTCGNCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTNTGCCCCTGGAGAGTTWGCACCCSCACCCGTAGTGATGTTACCGRT
-EASC_BX1112	GCGRGCCTCGCCGGGTTGCCCGGAGACAGATGRGGACCNGCGCCGWTNCTGGCWCTGTCCCTGGAGRGTTAGCACCCCCATCCSTAGTGATGTTACCGGT
-EAGA_BX301	GCGRGCCTCGCCGGGTTGCGCGGAGACAGATGARGACCAGCGCCGATCCTGGCTCTGCCCCTGGANAGTTAGCACCCCCACCCGTAGTGATGTTACCGGT
-EAGA_BXEA15_654	GCGRGNCTCNSCRGGTTGCCCGGAGACAGAKGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGANAGNTAGCACCCCCACCCGTAGTGAYGTTACCGGN
-EASC_BX1114	GCGRGCCTCGCCGGGTTGCCCGGAGACAGATRRGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGRGTTAGCACCCCCAYCCCTAGTGATGTTACCGRN
-TCGA_BX344	GNGRGCCTCGCCGGGTTRCCCGGAGACAGAKGRAGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCAYCCGTAGTGAYGTWACCART
-EAGA_BXEA33_663	GCGGGCCTCGNCGGGTNGCNCKGAGACAGATGAGGACCAGCGCCGATNCTGGCTNTGCCNCTGGANAGTTAGCACNNCCACCCGTANTGATNTTACCRAT
-CHCH_BX1191	GCGGGACTCGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTRGTGATGTTACCGGT
-CHCH_BX1193	GCGGGACTCGCCGGGTTGCCCGGAGACAGATGAGGACCAGCGCCGATCCTGGCTCTGCCCCTGGAGAGTTAGCACCCCCACCCGTRGTGATGTTACCGGT

pgsui/example_data/phylip_files/test_n2.phy DELETED Viewed

@@ -1,118 +0,0 @@
-117 2
-GUFL_BXGU36_AA14	AT
-GUFL_BX626	RN
-GUFL_BXGU65_AA39	AT
-GUFL_BX684	AT
-GUFL_BX504	AT
-GUFL_BX503	RT
-GUFL_BXGU32	AT
-GUFL_BXGU63_AA37	RT
-GUFL_BXGU35_AA13	AT
-GUFL_BXGU61_U57	AT
-GUFL_BXGU62_AA36	AT
-GUFL_BX685	AK
-GUFL_BXGU33	AT
-DSAZ_BX1213	GT
-DSNM_BXDS02	GT
-ONWI_BX489	AT
-ONWI_BX493	GT
-ONTX_BXON46_153	GT
-ONNE_BXON58_433x2	GT
-ONWI_BX495	GT
-ONWI_BX491	RT
-ONWI_BX497	GT
-ONCO_BX601	GT
-ONCO_BX588	GT
-ONWI_BX486	GT
-ONTX_BXON45_150	GT
-ONCO_BX580	GT
-ONWI_BX490	GT
-ONCO_BX602	GT
-ONKS_BXON61_133	GT
-FLFL_BXFL01	RT
-FLFL_BX683	AT
-TTLA_BXTT35_1486	GT
-TTAR_BX507	GT
-TTTX_BX227	GT
-TTTX_BX225	GT
-TTLA_BXTT34_1482	GT
-TTLA_BXTT36_1491	GN
-TTLA_BXTT37_1492	GT
-TTAR_BX987	GT
-TTLA_BXTT38_1493	GT
-TTTX_BX222	GT
-TTLA_BX421	GT
-TTKS_BXTT20_78	GT
-TTLA_BXTT13	GT
-TTAR_BX984	GT
-TTLA_BX422	GT
-TTLA_BXTT39_1498	GT
-TTTX_BX223	GT
-TTTX_BX228	GT
-MXMX_BX1195	AT
-MXMX_BX1194	AT
-MXMX_BX1196	AT
-GUMS_BXGU68_AA42	GT
-GUMS_BXGU53_T72	GT
-GUMS_BXGU78_AA52	RT
-GUMS_BXGU75_AA49	RT
-GUMS_BXGU76_AA50	GT
-GUMS_BXGU69_AA43	RT
-GUMS_BXGU77_AA51	GT
-GUMS_BXGU67_AA41	RT
-GUMS_BXGU74_AA48	NT
-GUMS_BXGU73_AA47	GT
-GUMS_BXGU50_T69	GT
-GUMS_BXGU48_T62	GT
-GUMS_BXGU56_T83	RT
-GUMS_BXGU58_T92	GT
-GUMS_BXGU54_T73	GT
-GUMS_BXGU44_T56	GT
-GUMS_BX200	GT
-GUMS_BXGU79_AA73	GT
-GUMS_BXGU49_T66	GT
-GUMS_BXGU72_AA46	GT
-GUMS_BXGU71_AA45	GT
-GUMS_BXGU43_T55	RT
-GUMS_BXGU47_T61	GT
-GUMS_BXGU45_T59	GT
-EASC_BXEA43_1307	AN
-EAGA_BXEA49_564	GT
-EAGA_BX660	GT
-EAAL_BXEA27	AT
-TCAL_BXTC63	GT
-TCAL_BX612	NN
-TCAL_BXTC93	AT
-EAGA_BXEA35_666	GT
-EASC_BX1108	GT
-EAGA_BXEA17	GT
-EAGA_BXEA34_665	AT
-EASC_BXEA42_1306	GT
-TCAL_BX279	GT
-EAVA_BX320	AT
-EAGA_BXEA21	NT
-EATN_BXEA02_36x2	AT
-EAVA_BX101	GT
-EASC_BXEA41_1305	AT
-EAGA_BXEA25	AK
-TCAL_BXTC92	GT
-EAGA_BX346	GT
-EAVA_BX321	AT
-EAGA_BX472	AT
-EASC_BXEA40_1304	AT
-EASC_BX1115	AT
-EAGA_BXEA32_662	AT
-TCAL_BX273	NN
-EASC_BX1109	NT
-TCAL_BXTC80	AN
-EASC_BX1110	AT
-TCAL_BXTC110	NT
-EAGA_BXEA31_659	RT
-EASC_BX1112	GT
-EAGA_BX301	GT
-EAGA_BXEA15_654	GN
-EASC_BX1114	RN
-TCGA_BX344	RT
-EAGA_BXEA33_663	AT
-CHCH_BX1191	GT
-CHCH_BX1193	GT

pg-sui 0.2.3__py3-none-any.whl → 1.6.14.dev9__py3-none-any.whl

pg-sui 0.2.3py3-none-any.whl → 1.6.14.dev9py3-none-any.whl