partis-bcr 1.0.8__py3-none-any.whl → 1.0.8.post1.dev1__py3-none-any.whl

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Files changed (156) hide show
  1. packages/ham/bcrham +0 -0
  2. packages/ig-sw/src/ig_align/ig-sw +0 -0
  3. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/METADATA +1 -1
  4. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/RECORD +155 -73
  5. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  6. test/new-results/test.log +12 -16
  7. test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv +8 -8
  8. test/paired/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -1
  9. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +8 -8
  10. test/paired/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -1
  11. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +5 -5
  12. test/paired/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -1
  13. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +8 -8
  14. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/fasttree.out +1 -1
  15. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log +8 -8
  16. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/fasttree.out +1 -1
  17. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log +9 -9
  18. test/paired/new-results/partition-new-simu/igh+igk/partition-igh-selection-metrics.yaml +1 -1
  19. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/fasttree.out +1 -1
  20. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/log +8 -8
  21. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/fasttree.out +1 -1
  22. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-1/log +4 -4
  23. test/paired/new-results/partition-new-simu/igh+igk/partition-igk-selection-metrics.yaml +1 -1
  24. test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/fasttree.out +1 -1
  25. test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/log +9 -9
  26. test/paired/new-results/partition-new-simu/igh+igl/partition-igh-selection-metrics.yaml +1 -1
  27. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/fasttree.out +1 -1
  28. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log +9 -9
  29. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-1/log +3 -3
  30. test/paired/new-results/partition-new-simu/igh+igl/partition-igl-selection-metrics.yaml +1 -1
  31. test/paired/new-results/partition-new-simu/selection-metrics.yaml +1 -1
  32. test/paired/new-results/partition-new-simu/single-chain/partition-igh.yaml +1 -1
  33. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  34. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  35. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  36. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  37. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  38. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  39. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  40. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  41. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  42. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  43. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  44. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  45. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  46. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  47. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  48. test/paired/new-results/run-times.csv +6 -6
  49. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +86 -102
  50. test/paired/new-results/subset-partition-new-simu/isub-1/igh+igk/partition-igh.yaml +1 -1
  51. test/paired/new-results/subset-partition-new-simu/isub-1/partition-igh.yaml +1 -1
  52. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +85 -101
  53. test/paired/new-results/subset-partition-new-simu/isub-1/single-chain/partition-igh.yaml +1 -1
  54. test/paired/new-results/subset-partition-new-simu/merged-partition.log +50 -54
  55. test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igk/partition-igh.yaml +1 -1
  56. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  57. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  58. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  59. test/paired/new-results/subset-partition-new-simu/merged-subsets/partition-igh.yaml +1 -1
  60. test/paired/new-results/test.log +203 -236
  61. test/ref-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  62. test/ref-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  63. test/ref-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  64. test/ref-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  65. test/ref-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  66. test/ref-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  67. test/ref-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  68. test/ref-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  69. test/ref-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  70. test/ref-results/partition-new-simu/iqtree/iclust-0/input-seqs.fa +24 -0
  71. test/ref-results/partition-new-simu/iqtree/iclust-0/log +394 -0
  72. test/ref-results/partition-new-simu/iqtree/iclust-0/out.bionj +1 -0
  73. test/ref-results/partition-new-simu/iqtree/iclust-0/out.ckp.gz +0 -0
  74. test/ref-results/partition-new-simu/iqtree/iclust-0/out.iqtree +282 -0
  75. test/ref-results/partition-new-simu/iqtree/iclust-0/out.log +393 -0
  76. test/ref-results/partition-new-simu/iqtree/iclust-0/out.mldist +13 -0
  77. test/ref-results/partition-new-simu/iqtree/iclust-0/out.model.gz +0 -0
  78. test/ref-results/partition-new-simu/iqtree/iclust-0/out.state +3529 -0
  79. test/ref-results/partition-new-simu/iqtree/iclust-0/out.treefile +1 -0
  80. test/ref-results/partition-new-simu/iqtree/iclust-1/input-seqs.fa +16 -0
  81. test/ref-results/partition-new-simu/iqtree/iclust-1/log +414 -0
  82. test/ref-results/partition-new-simu/iqtree/iclust-1/out.bionj +1 -0
  83. test/ref-results/partition-new-simu/iqtree/iclust-1/out.ckp.gz +0 -0
  84. test/ref-results/partition-new-simu/iqtree/iclust-1/out.iqtree +279 -0
  85. test/ref-results/partition-new-simu/iqtree/iclust-1/out.log +413 -0
  86. test/ref-results/partition-new-simu/iqtree/iclust-1/out.mldist +9 -0
  87. test/ref-results/partition-new-simu/iqtree/iclust-1/out.model.gz +0 -0
  88. test/ref-results/partition-new-simu/iqtree/iclust-1/out.state +2229 -0
  89. test/ref-results/partition-new-simu/iqtree/iclust-1/out.treefile +1 -0
  90. test/ref-results/partition-new-simu/iqtree/iclust-2/input-seqs.fa +16 -0
  91. test/ref-results/partition-new-simu/iqtree/iclust-2/log +376 -0
  92. test/ref-results/partition-new-simu/iqtree/iclust-2/out.bionj +1 -0
  93. test/ref-results/partition-new-simu/iqtree/iclust-2/out.ckp.gz +0 -0
  94. test/ref-results/partition-new-simu/iqtree/iclust-2/out.iqtree +274 -0
  95. test/ref-results/partition-new-simu/iqtree/iclust-2/out.log +375 -0
  96. test/ref-results/partition-new-simu/iqtree/iclust-2/out.mldist +9 -0
  97. test/ref-results/partition-new-simu/iqtree/iclust-2/out.model.gz +0 -0
  98. test/ref-results/partition-new-simu/iqtree/iclust-2/out.state +2283 -0
  99. test/ref-results/partition-new-simu/iqtree/iclust-2/out.treefile +1 -0
  100. test/ref-results/partition-new-simu/iqtree-annotations.yaml +1 -0
  101. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa +24 -0
  102. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralProbs +3461 -0
  103. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralStates +10 -0
  104. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.ancestralTree +1 -0
  105. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestModel +1 -0
  106. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTree +1 -0
  107. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.bestTreeCollapsed +1 -0
  108. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.log +216 -0
  109. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.mlTrees +20 -0
  110. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.rba +0 -0
  111. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.reduced.phy +9 -0
  112. test/ref-results/partition-new-simu/raxml/iclust-0/input-seqs.fa.raxml.startTree +20 -0
  113. test/ref-results/partition-new-simu/raxml/iclust-0/log +453 -0
  114. test/ref-results/partition-new-simu/raxml/iclust-0/run.sh +3 -0
  115. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa +16 -0
  116. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralProbs +2203 -0
  117. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralStates +6 -0
  118. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.ancestralTree +1 -0
  119. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestModel +1 -0
  120. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTree +1 -0
  121. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.bestTreeCollapsed +1 -0
  122. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.log +217 -0
  123. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.mlTrees +20 -0
  124. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.rba +0 -0
  125. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.reduced.phy +4 -0
  126. test/ref-results/partition-new-simu/raxml/iclust-1/input-seqs.fa.raxml.startTree +20 -0
  127. test/ref-results/partition-new-simu/raxml/iclust-1/log +440 -0
  128. test/ref-results/partition-new-simu/raxml/iclust-1/run.sh +3 -0
  129. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa +16 -0
  130. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralProbs +2275 -0
  131. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralStates +6 -0
  132. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.ancestralTree +1 -0
  133. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestModel +1 -0
  134. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTree +1 -0
  135. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.bestTreeCollapsed +1 -0
  136. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.log +207 -0
  137. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.mlTrees +20 -0
  138. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.rba +0 -0
  139. test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.startTree +20 -0
  140. test/ref-results/partition-new-simu/raxml/iclust-2/log +420 -0
  141. test/ref-results/partition-new-simu/raxml/iclust-2/run.sh +3 -0
  142. test/ref-results/partition-new-simu/raxml-annotations.yaml +1 -0
  143. bin/FastTree-macos +0 -0
  144. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/cf-alleles.py +0 -0
  145. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/cf-germlines.py +0 -0
  146. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/compare-plotdirs.py +0 -0
  147. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/extract-pairing-info.py +0 -0
  148. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/gctree-run.py +0 -0
  149. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/get-naive-probabilities.py +0 -0
  150. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/parse-output.py +0 -0
  151. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/partis-test.py +0 -0
  152. {partis_bcr-1.0.8.data → partis_bcr-1.0.8.post1.dev1.data}/scripts/split-loci.py +0 -0
  153. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/WHEEL +0 -0
  154. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/entry_points.txt +0 -0
  155. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/licenses/COPYING +0 -0
  156. {partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/top_level.txt +0 -0
test/ref-results/partition-new-simu/iqtree/iclust-1/out.log ADDED
@@ -0,0 +1,413 @@
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+ IQ-TREE version 3.0.1 for Linux x86 64-bit built May 5 2025
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+ Developed by Bui Quang Minh, Thomas Wong, Nhan Ly-Trong, Huaiyan Ren
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+ Contributed by Lam-Tung Nguyen, Dominik Schrempf, Chris Bielow,
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+ Olga Chernomor, Michael Woodhams, Diep Thi Hoang, Heiko Schmidt
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+
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+ Host: pkrvmubgrv54qmi (AVX2, FMA3, 15 GB RAM)
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+ Command: /home/runner/work/partis/partis/bin/iqtree3_intel -asr -s /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/input-seqs.fa -pre /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out -o XnaiveX
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+ Seed: 596149 (Using SPRNG - Scalable Parallel Random Number Generator)
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+ Time: Sat Aug 16 23:08:16 2025
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+ Kernel: AVX+FMA - 1 threads (4 CPU cores detected)
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+
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+ HINT: Use -nt option to specify number of threads because your CPU has 4 cores!
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+ HINT: -nt AUTO will automatically determine the best number of threads to use.
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+
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+ Reading alignment file /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/input-seqs.fa ... Fasta format detected
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+ Reading fasta file: done in 7.981e-05 secs using 48.87% CPU
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+ Alignment most likely contains DNA/RNA sequences
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+ Constructing alignment: done in 0.000370789 secs using 19.69% CPU
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+ WARNING: 3 sites contain only gaps or ambiguous characters.
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+ Alignment has 8 sequences with 370 columns, 7 distinct patterns
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+ 0 parsimony-informative, 2 singleton sites, 368 constant sites
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+ Gap/Ambiguity Composition p-value
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+ Analyzing sequences: done in 7.454e-06 secs
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+ 1 XnaiveX 0.81% passed 100.00%
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+ 2 13de8675ec 0.81% passed 100.00%
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+ 3 20a0129b57 0.81% passed 99.96%
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+ 4 31e052ee14 0.81% passed 100.00%
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+ 5 33aaa62e12 0.81% passed 100.00%
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+ 6 4233d708fe 0.81% passed 100.00%
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+ 7 91796617a0 0.81% passed 100.00%
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+ 8 97366cf0d8 0.81% passed 99.95%
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+ **** TOTAL 0.81% 0 sequences failed composition chi2 test (p-value<5%; df=3)
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+
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+
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+ Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.000 seconds
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+ Perform fast likelihood tree search using GTR+I+G model...
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+ Estimate model parameters (epsilon = 5.000)
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+ Perform nearest neighbor interchange...
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+ Optimizing NNI: done in 0.000214284 secs using 98.93% CPU
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+ Estimate model parameters (epsilon = 1.000)
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+ 1. Initial log-likelihood: -519.628
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+ Optimal log-likelihood: -519.601
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+ Rate parameters: A-C: 0.00010 A-G: 3.78714 A-T: 0.00010 C-G: 0.00010 C-T: 0.00010 G-T: 1.00000
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+ Warning! Some parameters hit the boundaries
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+ Base frequencies: A: 0.237 C: 0.270 G: 0.294 T: 0.199
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+ Proportion of invariable sites: 0.497
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+ Gamma shape alpha: 998.448
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+ Parameters optimization took 1 rounds (0.001 sec)
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+ Time for fast ML tree search: 0.002 seconds
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+
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+ NOTE: ModelFinder requires 0 MB RAM!
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+ ModelFinder will test up to 968 DNA models (sample size: 370 epsilon: 0.100) ...
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+ No. Model -LnL df AIC AICc BIC
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+ 1 JC 524.779 13 1075.559 1076.581 1126.434
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+ 2 JC+I 524.779 14 1077.559 1078.742 1132.348
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+ 3 JC+G4 524.779 14 1077.559 1078.742 1132.348
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+ 4 JC+I+G4 524.782 15 1079.564 1080.920 1138.267
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+ 5 JC+R2 524.779 15 1079.559 1080.914 1138.261
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+ 6 JC+R3 524.779 17 1083.559 1085.297 1150.088
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+ 14 JC+I+R2 524.782 16 1081.564 1083.105 1144.180
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+ 15 JC+I+R3 524.782 18 1085.564 1087.513 1156.007
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+ 23 JC 524.779 13 1075.559 1076.581 1126.434
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+ 24 JC+I 524.779 14 1077.559 1078.742 1132.348
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+ 25 JC+G4 524.779 14 1077.559 1078.742 1132.348
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+ 45 F81 524.779 13 1075.559 1076.581 1126.434
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+ 46 F81+I 524.779 14 1077.559 1078.742 1132.348
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+ 47 F81+G4 524.779 14 1077.559 1078.742 1132.348
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+ 67 F81+F 521.218 16 1074.437 1075.978 1137.053
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+ 68 F81+F+I 521.218 17 1076.437 1078.175 1142.966
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+ 69 F81+F+G4 521.218 17 1076.437 1078.175 1142.966
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+ 89 K2P 524.663 14 1077.326 1078.509 1132.115
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+ 90 K2P+I 524.663 15 1079.326 1080.682 1138.028
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+ 91 K2P+G4 524.663 15 1079.326 1080.682 1138.028
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+ 111 K2P 524.663 14 1077.326 1078.509 1132.115
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+ 112 K2P+I 524.663 15 1079.326 1080.682 1138.028
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+ 113 K2P+G4 524.663 15 1079.326 1080.682 1138.028
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+ 133 HKY 524.663 14 1077.325 1078.508 1132.114
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+ 134 HKY+I 524.663 15 1079.325 1080.681 1138.028
79
+ 135 HKY+G4 524.663 15 1079.325 1080.681 1138.028
80
+ 155 HKY+F 521.099 17 1076.198 1077.937 1142.728
81
+ 156 HKY+F+I 521.099 18 1078.198 1080.147 1148.641
82
+ 157 HKY+F+G4 521.099 18 1078.198 1080.147 1148.641
83
+ 177 TNe 524.028 15 1078.055 1079.411 1136.758
84
+ 178 TNe+I 524.028 16 1080.055 1081.596 1142.671
85
+ 179 TNe+G4 524.028 16 1080.055 1081.596 1142.671
86
+ 199 TNe 524.028 15 1078.055 1079.411 1136.758
87
+ 200 TNe+I 524.028 16 1080.055 1081.596 1142.671
88
+ 201 TNe+G4 524.028 16 1080.055 1081.596 1142.671
89
+ 221 TN 524.028 15 1078.055 1079.411 1136.758
90
+ 222 TN+I 524.028 16 1080.055 1081.596 1142.671
91
+ 223 TN+G4 524.028 16 1080.055 1081.596 1142.671
92
+ 243 TN+F 520.525 18 1077.050 1078.999 1147.494
93
+ 244 TN+F+I 520.525 19 1079.050 1081.222 1153.407
94
+ 245 TN+F+G4 520.525 19 1079.050 1081.222 1153.407
95
+ 265 K3P 523.994 15 1077.988 1079.344 1136.690
96
+ 266 K3P+I 523.998 16 1079.996 1081.537 1142.612
97
+ 267 K3P+G4 523.996 16 1079.992 1081.533 1142.608
98
+ 287 K3P 523.994 15 1077.988 1079.344 1136.690
99
+ 288 K3P+I 523.998 16 1079.996 1081.537 1142.612
100
+ 289 K3P+G4 523.996 16 1079.992 1081.533 1142.608
101
+ 309 K3Pu 523.971 15 1077.941 1079.297 1136.644
102
+ 310 K3Pu+I 523.970 16 1079.940 1081.481 1142.556
103
+ 311 K3Pu+G4 523.970 16 1079.940 1081.481 1142.556
104
+ 331 K3Pu+F 520.390 18 1076.780 1078.729 1147.223
105
+ 332 K3Pu+F+I 520.390 19 1078.780 1080.952 1153.137
106
+ 333 K3Pu+F+G4 520.390 19 1078.780 1080.952 1153.137
107
+ 353 TPM2 524.023 15 1078.046 1079.402 1136.749
108
+ 354 TPM2+I 524.023 16 1080.046 1081.587 1142.662
109
+ 355 TPM2+G4 524.023 16 1080.046 1081.587 1142.662
110
+ 375 TPM2 524.023 15 1078.046 1079.402 1136.749
111
+ 376 TPM2+I 524.023 16 1080.046 1081.587 1142.662
112
+ 377 TPM2+G4 524.023 16 1080.046 1081.587 1142.662
113
+ 397 TPM2u 524.023 15 1078.046 1079.402 1136.749
114
+ 398 TPM2u+I 524.023 16 1080.046 1081.587 1142.662
115
+ 399 TPM2u+G4 524.023 16 1080.046 1081.587 1142.662
116
+ 419 TPM2u+F 520.505 18 1077.011 1078.959 1147.454
117
+ 420 TPM2u+F+I 520.505 19 1079.010 1081.182 1153.367
118
+ 421 TPM2u+F+G4 520.505 19 1079.010 1081.181 1153.367
119
+ 441 TPM3 523.895 15 1077.791 1079.147 1136.493
120
+ 442 TPM3+I 523.895 16 1079.791 1081.332 1142.407
121
+ 443 TPM3+G4 523.895 16 1079.791 1081.332 1142.407
122
+ 463 TPM3 523.895 15 1077.791 1079.147 1136.493
123
+ 464 TPM3+I 523.895 16 1079.791 1081.332 1142.407
124
+ 465 TPM3+G4 523.895 16 1079.791 1081.332 1142.407
125
+ 485 TPM3u 523.895 15 1077.791 1079.147 1136.493
126
+ 486 TPM3u+I 523.895 16 1079.791 1081.332 1142.407
127
+ 487 TPM3u+G4 523.895 16 1079.791 1081.332 1142.407
128
+ 507 TPM3u+F 520.242 18 1076.484 1078.433 1146.927
129
+ 508 TPM3u+F+I 520.242 19 1078.484 1080.656 1152.841
130
+ 509 TPM3u+F+G4 520.242 19 1078.484 1080.656 1152.841
131
+ 529 TIMe 523.740 16 1079.479 1081.021 1142.096
132
+ 530 TIMe+I 523.733 17 1081.466 1083.205 1147.996
133
+ 531 TIMe+G4 523.726 17 1081.452 1083.191 1147.982
134
+ 551 TIMe 523.740 16 1079.479 1081.021 1142.096
135
+ 552 TIMe+I 523.733 17 1081.466 1083.205 1147.996
136
+ 553 TIMe+G4 523.726 17 1081.452 1083.191 1147.982
137
+ 573 TIM 523.733 16 1079.466 1081.007 1142.082
138
+ 574 TIM+I 523.726 17 1081.452 1083.191 1147.982
139
+ 575 TIM+G4 523.719 17 1081.439 1083.177 1147.968
140
+ 595 TIM+F 519.817 19 1077.635 1079.806 1151.991
141
+ 596 TIM+F+I 519.818 20 1079.635 1082.042 1157.905
142
+ 597 TIM+F+G4 519.817 20 1079.635 1082.042 1157.905
143
+ 617 TIM2e 523.390 16 1078.779 1080.320 1141.395
144
+ 618 TIM2e+I 523.390 17 1080.779 1082.518 1147.309
145
+ 619 TIM2e+G4 523.390 17 1080.779 1082.518 1147.309
146
+ 639 TIM2e 523.390 16 1078.779 1080.320 1141.395
147
+ 640 TIM2e+I 523.390 17 1080.779 1082.518 1147.309
148
+ 641 TIM2e+G4 523.390 17 1080.779 1082.518 1147.309
149
+ 661 TIM2 523.390 16 1078.779 1080.320 1141.395
150
+ 662 TIM2+I 523.390 17 1080.779 1082.518 1147.309
151
+ 663 TIM2+G4 523.390 17 1080.779 1082.518 1147.309
152
+ 683 TIM2+F 519.933 19 1077.866 1080.037 1152.222
153
+ 684 TIM2+F+I 519.933 20 1079.866 1082.273 1158.136
154
+ 685 TIM2+F+G4 519.933 20 1079.866 1082.273 1158.136
155
+ 705 TIM3e 523.262 16 1078.523 1080.064 1141.139
156
+ 706 TIM3e+I 523.262 17 1080.523 1082.262 1147.053
157
+ 707 TIM3e+G4 523.262 17 1080.523 1082.262 1147.053
158
+ 727 TIM3e 523.262 16 1078.523 1080.064 1141.139
159
+ 728 TIM3e+I 523.262 17 1080.523 1082.262 1147.053
160
+ 729 TIM3e+G4 523.262 17 1080.523 1082.262 1147.053
161
+ 749 TIM3 523.262 16 1078.523 1080.064 1141.139
162
+ 750 TIM3+I 523.262 17 1080.523 1082.262 1147.053
163
+ 751 TIM3+G4 523.262 17 1080.523 1082.262 1147.053
164
+ 771 TIM3+F 519.669 19 1077.338 1079.510 1151.695
165
+ 772 TIM3+F+I 519.669 20 1079.338 1081.745 1157.608
166
+ 773 TIM3+F+G4 519.669 20 1079.339 1081.746 1157.609
167
+ 793 TVMe 523.261 17 1080.522 1082.261 1147.052
168
+ 794 TVMe+I 523.261 18 1082.522 1084.471 1152.965
169
+ 795 TVMe+G4 523.261 18 1082.522 1084.471 1152.965
170
+ 815 TVMe 523.261 17 1080.522 1082.261 1147.052
171
+ 816 TVMe+I 523.261 18 1082.522 1084.471 1152.965
172
+ 817 TVMe+G4 523.261 18 1082.522 1084.471 1152.965
173
+ 837 TVM 523.261 17 1080.522 1082.261 1147.052
174
+ 838 TVM+I 523.261 18 1082.522 1084.471 1152.965
175
+ 839 TVM+G4 523.261 18 1082.522 1084.471 1152.965
176
+ 859 TVM+F 519.650 20 1079.299 1081.706 1157.569
177
+ 860 TVM+F+I 519.650 21 1081.299 1083.954 1163.483
178
+ 861 TVM+F+G4 519.650 21 1081.299 1083.954 1163.483
179
+ 881 SYM 522.627 18 1081.254 1083.203 1151.697
180
+ 882 SYM+I 522.627 19 1083.254 1085.425 1157.611
181
+ 883 SYM+G4 522.627 19 1083.254 1085.425 1157.611
182
+ 903 SYM 522.627 18 1081.254 1083.203 1151.697
183
+ 904 SYM+I 522.627 19 1083.254 1085.425 1157.611
184
+ 905 SYM+G4 522.627 19 1083.254 1085.425 1157.611
185
+ 925 GTR 522.627 18 1081.254 1083.203 1151.697
186
+ 926 GTR+I 522.627 19 1083.254 1085.425 1157.611
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+ 927 GTR+G4 522.627 19 1083.254 1085.425 1157.611
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+ 947 GTR+F 519.077 21 1080.154 1082.809 1162.338
189
+ 948 GTR+F+I 519.077 22 1082.154 1085.070 1168.251
190
+ 949 GTR+F+G4 519.077 22 1082.154 1085.071 1168.251
191
+ Akaike Information Criterion: F81+F
192
+ Corrected Akaike Information Criterion: F81+F
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+ Bayesian Information Criterion: F81
194
+ Best-fit model: F81 chosen according to BIC
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+
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+ All model information printed to /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out.model.gz
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+ CPU time for ModelFinder: 0.084 seconds (0h:0m:0s)
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+ Wall-clock time for ModelFinder: 0.092 seconds (0h:0m:0s)
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+
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+ NOTE: 0 MB RAM (0 GB) is required!
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+ Estimate model parameters (epsilon = 0.100)
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+ 1. Initial log-likelihood: -521.218
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+ Optimal log-likelihood: -521.218
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+ Rate parameters: A-C: 1.00000 A-G: 1.00000 A-T: 1.00000 C-G: 1.00000 C-T: 1.00000 G-T: 1.00000
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+ Base frequencies: A: 0.237 C: 0.270 G: 0.294 T: 0.199
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+ Parameters optimization took 1 rounds (0.000 sec)
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+ Wrote distance file to...
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+ Computing ML distances based on estimated model parameters...
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+ Calculating distance matrix: done in 6.929e-05 secs using 88.04% CPU
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+ Computing ML distances took 0.000082 sec (of wall-clock time) 0.000076 sec (of CPU time)
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+ Setting up auxiliary I and S matrices: done in 2.651e-05 secs using 86.76% CPU
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+ Constructing RapidNJ tree: done in 3.177e-05 secs using 88.13% CPU
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+ Computing RapidNJ tree took 0.000079 sec (of wall-clock time) 0.000070 sec (of CPU time)
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+ Log-likelihood of RapidNJ tree: -521.220
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+ --------------------------------------------------------------------
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+ | INITIALIZING CANDIDATE TREE SET |
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+ --------------------------------------------------------------------
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+ Generating 98 parsimony trees... 0.009 second
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+ Computing log-likelihood of 98 initial trees ... 0.006 seconds
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+ Current best score: -521.218
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+
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+ Do NNI search on 20 best initial trees
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+ Optimizing NNI: done in 0.000150063 secs using 89.96% CPU
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+ Estimate model parameters (epsilon = 0.100)
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+ BETTER TREE FOUND at iteration 1: -521.218
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+ Optimizing NNI: done in 0.000106661 secs using 90% CPU
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+ Optimizing NNI: done in 0.000105599 secs using 89.96% CPU
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+ Optimizing NNI: done in 0.000103596 secs using 89.77% CPU
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+ Optimizing NNI: done in 0.000134382 secs using 90.79% CPU
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+ Optimizing NNI: done in 0.000131197 secs using 99.09% CPU
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+ Optimizing NNI: done in 0.000130406 secs using 98.92% CPU
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+ Optimizing NNI: done in 0.000128142 secs using 99.89% CPU
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+ Optimizing NNI: done in 0.000130365 secs using 99.72% CPU
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+ Optimizing NNI: done in 0.000128442 secs using 98.88% CPU
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+ Iteration 10 / LogL: -521.218 / Time: 0h:0m:0s
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+ Optimizing NNI: done in 0.000154491 secs
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+ Optimizing NNI: done in 0.000129614 secs
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+ Optimizing NNI: done in 0.000128973 secs
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+ Optimizing NNI: done in 0.000129414 secs
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+ Optimizing NNI: done in 0.000132179 secs
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+ Optimizing NNI: done in 0.000130856 secs using 33.62% CPU
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+ Optimizing NNI: done in 0.000128722 secs
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+ Optimizing NNI: done in 0.00012742 secs
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+ Optimizing NNI: done in 0.000127861 secs
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+ Optimizing NNI: done in 0.000131709 secs
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+ Iteration 20 / LogL: -521.218 / Time: 0h:0m:0s
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+ Finish initializing candidate tree set (20)
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+ Current best tree score: -521.218 / CPU time: 0.019
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+ Number of iterations: 20
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+ --------------------------------------------------------------------
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+ | OPTIMIZING CANDIDATE TREE SET |
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+ --------------------------------------------------------------------
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+ Optimizing NNI: done in 0.000160593 secs using 99.01% CPU
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+ Optimizing NNI: done in 0.000134353 secs using 98.99% CPU
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+ Optimizing NNI: done in 0.0001066 secs using 99.44% CPU
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+ Optimizing NNI: done in 0.00010671 secs using 89.03% CPU
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+ Optimizing NNI: done in 0.000147918 secs using 99.38% CPU
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+ Optimizing NNI: done in 0.00013266 secs using 98.75% CPU
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+ Optimizing NNI: done in 0.000131207 secs using 99.08% CPU
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+ Optimizing NNI: done in 0.000103395 secs using 99.62% CPU
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+ Optimizing NNI: done in 0.000157507 secs using 99.04% CPU
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+ Optimizing NNI: done in 0.00010631 secs using 99.71% CPU
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+ Iteration 30 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000108043 secs using 99.03% CPU
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+ Optimizing NNI: done in 0.000105078 secs using 98.97% CPU
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+ Optimizing NNI: done in 0.000104276 secs using 97.82% CPU
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+ Optimizing NNI: done in 0.000105108 secs using 98.95% CPU
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+ Optimizing NNI: done in 0.000132971 secs using 99.27% CPU
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+ Optimizing NNI: done in 0.000103455 secs using 99.56% CPU
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+ Optimizing NNI: done in 0.000101992 secs using 99.03% CPU
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+ Optimizing NNI: done in 0.000115047 secs using 99.09% CPU
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+ BETTER TREE FOUND at iteration 38: -521.218
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+ Optimizing NNI: done in 0.00010663 secs using 99.41% CPU
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+ Optimizing NNI: done in 0.00015899 secs using 98.75% CPU
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+ Iteration 40 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000156084 secs using 99.31% CPU
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+ Optimizing NNI: done in 0.000104958 secs using 99.09% CPU
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+ Optimizing NNI: done in 0.000131307 secs using 99% CPU
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+ Optimizing NNI: done in 0.00010067 secs using 98.34% CPU
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+ Optimizing NNI: done in 0.000102964 secs using 99.06% CPU
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+ Optimizing NNI: done in 0.000103876 secs using 98.19% CPU
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+ Optimizing NNI: done in 0.000139683 secs using 98.8% CPU
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+ Optimizing NNI: done in 0.000216629 secs using 99.25% CPU
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+ Optimizing NNI: done in 0.000145705 secs using 99.52% CPU
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+ Optimizing NNI: done in 0.000144822 secs using 99.43% CPU
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+ Iteration 50 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000194676 secs using 99.65% CPU
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+ Optimizing NNI: done in 0.000145935 secs using 98.67% CPU
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+ Optimizing NNI: done in 0.000182685 secs using 99.63% CPU
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+ Optimizing NNI: done in 0.000144803 secs using 99.45% CPU
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+ Optimizing NNI: done in 0.000145854 secs using 98.73% CPU
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+ Optimizing NNI: done in 0.000186782 secs using 99.05% CPU
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+ Optimizing NNI: done in 0.000146366 secs using 98.38% CPU
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+ Optimizing NNI: done in 0.000193424 secs using 99.26% CPU
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+ Optimizing NNI: done in 0.000143351 secs using 99.06% CPU
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+ Optimizing NNI: done in 0.000144343 secs using 99.07% CPU
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+ Iteration 60 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000186441 secs using 99.23% CPU
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+ Optimizing NNI: done in 0.000190168 secs using 99.39% CPU
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+ Optimizing NNI: done in 0.000194727 secs
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+ Optimizing NNI: done in 0.000183405 secs
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+ Optimizing NNI: done in 0.000190309 secs
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+ Optimizing NNI: done in 0.00014307 secs using 99.25% CPU
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+ Optimizing NNI: done in 0.000144913 secs using 89.71% CPU
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+ Optimizing NNI: done in 0.000188936 secs using 89.45% CPU
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+ Optimizing NNI: done in 0.000142428 secs using 99% CPU
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+ Optimizing NNI: done in 0.000185369 secs using 99.26% CPU
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+ Iteration 70 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000144211 secs using 97.77% CPU
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+ Optimizing NNI: done in 0.000144312 secs using 99.09% CPU
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+ Optimizing NNI: done in 0.000137349 secs using 99.02% CPU
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+ Optimizing NNI: done in 0.000103484 secs using 98.57% CPU
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+ Optimizing NNI: done in 0.000158639 secs using 98.97% CPU
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+ Optimizing NNI: done in 0.000104717 secs using 98.36% CPU
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+ Optimizing NNI: done in 0.000102423 secs using 99.59% CPU
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+ Optimizing NNI: done in 0.000137098 secs using 99.2% CPU
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+ Optimizing NNI: done in 0.000103194 secs using 94.97% CPU
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+ Optimizing NNI: done in 0.000133492 secs using 98.88% CPU
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+ Iteration 80 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000103996 secs using 99.04% CPU
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+ Optimizing NNI: done in 0.000137389 secs using 99.72% CPU
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+ Optimizing NNI: done in 0.000136417 secs using 99.69% CPU
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+ Optimizing NNI: done in 0.000131277 secs using 99.03% CPU
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+ Optimizing NNI: done in 0.000133962 secs using 99.28% CPU
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+ Optimizing NNI: done in 0.000103505 secs using 98.55% CPU
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+ Optimizing NNI: done in 0.000134483 secs using 99.64% CPU
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+ Optimizing NNI: done in 0.000103825 secs using 99.21% CPU
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+ Optimizing NNI: done in 0.000131758 secs using 99.42% CPU
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+ Optimizing NNI: done in 0.000103495 secs using 99.52% CPU
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+ Iteration 90 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000128552 secs using 99.57% CPU
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+ Optimizing NNI: done in 0.000157497 secs using 99.05% CPU
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+ Optimizing NNI: done in 0.000135555 secs using 98.85% CPU
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+ Optimizing NNI: done in 0.000133963 secs using 99.28% CPU
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+ Optimizing NNI: done in 0.000129775 secs using 99.4% CPU
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+ Optimizing NNI: done in 0.000210246 secs using 99.41% CPU
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+ Optimizing NNI: done in 0.000186161 secs using 99.38% CPU
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+ Optimizing NNI: done in 0.000149732 secs using 99.51% CPU
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+ Optimizing NNI: done in 0.000182735 secs using 99.6% CPU
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+ Optimizing NNI: done in 0.000140404 secs using 99% CPU
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+ Iteration 100 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000184457 secs using 99.21% CPU
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+ Optimizing NNI: done in 0.00019105 secs using 99.45% CPU
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+ Optimizing NNI: done in 0.000145283 secs using 99.12% CPU
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+ Optimizing NNI: done in 0.000145223 secs using 99.16% CPU
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+ Optimizing NNI: done in 0.00014855 secs using 99.63% CPU
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+ Optimizing NNI: done in 0.000144252 secs using 99.13% CPU
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+ Optimizing NNI: done in 0.000187994 secs using 99.47% CPU
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+ Optimizing NNI: done in 0.000190569 secs using 99.7% CPU
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+ Optimizing NNI: done in 0.000188505 secs using 99.2% CPU
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+ Optimizing NNI: done in 0.000143921 secs using 98.67% CPU
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+ Iteration 110 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000144803 secs using 99.45% CPU
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+ Optimizing NNI: done in 0.000144011 secs using 98.6% CPU
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+ Optimizing NNI: done in 0.000198053 secs using 99.47% CPU
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+ Optimizing NNI: done in 0.000145003 secs using 99.31% CPU
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+ Optimizing NNI: done in 0.000185449 secs using 99.76% CPU
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+ Optimizing NNI: done in 0.000157817 secs using 99.48% CPU
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+ Optimizing NNI: done in 0.000144081 secs using 99.25% CPU
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+ Optimizing NNI: done in 0.000182514 secs using 99.17% CPU
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+ Optimizing NNI: done in 0.000198794 secs using 99.6% CPU
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+ Optimizing NNI: done in 0.000183887 secs using 99.52% CPU
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+ Iteration 120 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.00016447 secs using 99.11% CPU
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+ Optimizing NNI: done in 0.000155433 secs using 99.08% CPU
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+ Optimizing NNI: done in 0.000104978 secs using 99.07% CPU
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+ Optimizing NNI: done in 0.000104197 secs using 98.85% CPU
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+ Optimizing NNI: done in 0.000102142 secs using 98.88% CPU
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+ Optimizing NNI: done in 0.000103845 secs using 99.19% CPU
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+ Optimizing NNI: done in 0.000103716 secs using 99.31% CPU
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+ Optimizing NNI: done in 0.000133141 secs using 99.14% CPU
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+ Optimizing NNI: done in 0.000101732 secs using 99.28% CPU
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+ Optimizing NNI: done in 0.000103264 secs using 98.78% CPU
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+ Iteration 130 / LogL: -521.218 / Time: 0h:0m:0s (0h:0m:0s left)
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+ Optimizing NNI: done in 0.000147388 secs
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+ Optimizing NNI: done in 0.000133251 secs
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+ Optimizing NNI: done in 0.000105278 secs
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+ Optimizing NNI: done in 0.000132419 secs
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+ Optimizing NNI: done in 0.000143651 secs
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+ Optimizing NNI: done in 0.000103726 secs
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+ Optimizing NNI: done in 0.00013237 secs
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+ Optimizing NNI: done in 0.000134664 secs
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+ Optimizing NNI: done in 0.000133742 secs using 15.7% CPU
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+ TREE SEARCH COMPLETED AFTER 139 ITERATIONS / Time: 0h:0m:0s
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+
386
+ --------------------------------------------------------------------
387
+ | FINALIZING TREE SEARCH |
388
+ --------------------------------------------------------------------
389
+ Performs final model parameters optimization
390
+ Estimate model parameters (epsilon = 0.010)
391
+ 1. Initial log-likelihood: -521.218
392
+ Optimal log-likelihood: -521.218
393
+ Rate parameters: A-C: 1.00000 A-G: 1.00000 A-T: 1.00000 C-G: 1.00000 C-T: 1.00000 G-T: 1.00000
394
+ Base frequencies: A: 0.237 C: 0.270 G: 0.294 T: 0.199
395
+ Parameters optimization took 1 rounds (0.000 sec)
396
+ BEST SCORE FOUND : -521.218
397
+ Ancestral state probabilities printed to /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out.state
398
+ Total tree length: 0.005
399
+
400
+ Total number of iterations: 139
401
+ CPU time used for tree search: 0.056 sec (0h:0m:0s)
402
+ Wall-clock time used for tree search: 0.053 sec (0h:0m:0s)
403
+ Total CPU time used: 0.148 sec (0h:0m:0s)
404
+ Total wall-clock time used: 0.157 sec (0h:0m:0s)
405
+
406
+ Analysis results written to:
407
+ IQ-TREE report: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out.iqtree
408
+ Maximum-likelihood tree: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out.treefile
409
+ Likelihood distances: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out.mldist
410
+ Ancestral state: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out.state
411
+ Screen log file: /home/runner/work/partis/partis/test/ref-results/partition-new-simu/iqtree/iclust-1/out.log
412
+
413
+ Date and Time: Sat Aug 16 23:08:16 2025
test/ref-results/partition-new-simu/iqtree/iclust-1/out.mldist ADDED
@@ -0,0 +1,9 @@
1
+ 8
2
+ XnaiveX 0.0000000 0.0000010 0.0027296 0.0000010 0.0000010 0.0000010 0.0000010 0.0027296
3
+ 13de8675ec 0.0000010 0.0000000 0.0027296 0.0000010 0.0000010 0.0000010 0.0000010 0.0027296
4
+ 20a0129b57 0.0027296 0.0027296 0.0000000 0.0027296 0.0027296 0.0027296 0.0027296 0.0054684
5
+ 31e052ee14 0.0000010 0.0000010 0.0027296 0.0000000 0.0000010 0.0000010 0.0000010 0.0027296
6
+ 33aaa62e12 0.0000010 0.0000010 0.0027296 0.0000010 0.0000000 0.0000010 0.0000010 0.0027296
7
+ 4233d708fe 0.0000010 0.0000010 0.0027296 0.0000010 0.0000010 0.0000000 0.0000010 0.0027296
8
+ 91796617a0 0.0000010 0.0000010 0.0027296 0.0000010 0.0000010 0.0000010 0.0000000 0.0027296
9
+ 97366cf0d8 0.0027296 0.0027296 0.0054684 0.0027296 0.0027296 0.0027296 0.0027296 0.0000000