PyPI - partis-bcr - Versions diffs - 1.0.8__py3-none-any.whl → 1.0.8.post1.dev1__py3-none-any.whl - Mend

partis-bcr 1.0.8py3-none-any.whl → 1.0.8.post1.dev1py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (156) hide show

packages/ham/bcrham CHANGED Viewed

Binary file

packages/ig-sw/src/ig_align/ig-sw CHANGED Viewed

Binary file

{partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/METADATA RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: partis-bcr
-Version: 1.0.8
+Version: 1.0.8.post1.dev1
 Summary: B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference
 Home-page: https://github.com/psathyrella/partis
 Author: Duncan Ralph

{partis_bcr-1.0.8.dist-info → partis_bcr-1.0.8.post1.dev1.dist-info}/RECORD RENAMED Viewed

@@ -1,5 +1,4 @@
 bin/FastTree-linux,sha256=ztIqHXzUJRUFLo-BEcE97UyityueIJmFPWXFOoJ0l4k,368264
-bin/FastTree-macos,sha256=veGDvI4M2NsLg2yh-XHlZiaGO0wJE2Ztxz9ZwvaPwHQ,371008
 bin/add-chimeras.py,sha256=7Zug9D7qtVa2k81kcIGtMKH0BjCmeiq2_rRDjPoiZug,2351
 bin/add-seqs-to-outputs.py,sha256=O7Mkz7GbkJPNtJ4v1fI1d3XfuYLOxG0ZofG37U_Rjsg,5156
 bin/bcr-phylo-run.py,sha256=rzafOBrnLlOQWp3XnBHwYqnsVQVThrVLab1K_zgNi-k,54060
@@ -302,18 +301,18 @@ data/substitution-profiles/GSSPs_for_VH_genes_with_at_least_300_lineages.txt,sha
 data/substitution-profiles/GSSPs_for_VK_genes_with_at_least_300_lineages.txt,sha256=dyMU1R_Izk_ciOVTNWmGL5SQBIKDCCKpxXM6eTGO4Fg,184138
 data/substitution-profiles/GSSPs_for_VL_genes_with_at_least_300_lineages.txt,sha256=CMFb1gk8MbfaMb6y0_qLLiKErrx866C2EafKRSPesB4,184979
 data/substitution-profiles/notes.txt,sha256=-DK9E31YovqOWaXR1Q-LL5KFhjVJcSLwXbriajUq1TA,389
-packages/ham/bcrham,sha256=o5p2CWbikoQnJeaTuavy2T9hAdiBUDqhBgJDSXJq7B8,768288
-packages/ig-sw/src/ig_align/ig-sw,sha256=Pl5ghiN_OYvM3299ErtwOYPhoWECl3fyzIHWAKPtTKE,387408
-partis_bcr-1.0.8.data/scripts/cf-alleles.py,sha256=AgFLoRfcwuX1InVpE3zG6-unqoCBGOeCTpEl_RZftvU,4723
-partis_bcr-1.0.8.data/scripts/cf-germlines.py,sha256=8_bq0ue3ALFQ-a7-ntnhkbCaBdQ5mlWtQgNeQP_TvcQ,3135
-partis_bcr-1.0.8.data/scripts/compare-plotdirs.py,sha256=AABVGUOwlLCijjo-wwDLfLHiq80TrFVm8mE-4Zqn5Sg,16370
-partis_bcr-1.0.8.data/scripts/extract-pairing-info.py,sha256=IGPd4jYpsW3IPgsrxTJrk9jAwUKlb45eX3lOpb8Maos,2941
-partis_bcr-1.0.8.data/scripts/gctree-run.py,sha256=BfSZCFgqdhUEqVsv2h20o6OkS6KbQgx5tfvBhySRx2U,13950
-partis_bcr-1.0.8.data/scripts/get-naive-probabilities.py,sha256=WfuglaedP3PF0wpksGiUSvfAg4wJoNlucTPa1Wl9MDo,6916
-partis_bcr-1.0.8.data/scripts/parse-output.py,sha256=8nrg0ip3XDhme02NCiI45BrSqCNvbRIbKYErD8STk8U,19519
-partis_bcr-1.0.8.data/scripts/partis-test.py,sha256=bQq_sT9v2DVQBgUGqQzdvy-q1jUrqAxV6Sl-tzENwus,63735
-partis_bcr-1.0.8.data/scripts/split-loci.py,sha256=K0WXQYtloL5rs46mwvEXUecqT3iG8bbqwNOTNwfpvzY,20704
-partis_bcr-1.0.8.dist-info/licenses/COPYING,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
+packages/ham/bcrham,sha256=1g26DafyE_6wglae2TUXc6xkpd2AUp0LDV6Kl_2S7jY,852320
+packages/ig-sw/src/ig_align/ig-sw,sha256=lYbqn7wujB6j1T7BGeeCqw5kwbPFn0213lDfUBmJb98,282048
+partis_bcr-1.0.8.post1.dev1.data/scripts/cf-alleles.py,sha256=AgFLoRfcwuX1InVpE3zG6-unqoCBGOeCTpEl_RZftvU,4723
+partis_bcr-1.0.8.post1.dev1.data/scripts/cf-germlines.py,sha256=8_bq0ue3ALFQ-a7-ntnhkbCaBdQ5mlWtQgNeQP_TvcQ,3135
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+partis_bcr-1.0.8.post1.dev1.dist-info/licenses/COPYING,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
 python/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 python/alleleclusterer.py,sha256=x50E_lJMlKPc-CPkdkM1qe4AvVi-mkDJ1cBDxs5L-ms,30551
 python/allelefinder.py,sha256=SgJjopk5ivLOcmTumsWq5PZ05aPZ6zQyjTd1fxeRjaM,80402
@@ -373,7 +372,8 @@ test/phylo-naive-run.py,sha256=pTyXPv0CBddu0CVPetORRazoYyKzYa427Cwtpcuq7DE,5282
 test/run-gl-inference.sh,sha256=XK3cs5xQad5LAoVaVp2-3IMJssml8ZBNYPwLRrlW2vg,1408
 test/scoper-run.py,sha256=GzLeaGrh3IPzD9B4KC6GiS0wak8ctL7td2WJmsbb7K8,8672
 test/test.py,sha256=CS0H2eckShv9TIPh-p_6jeaBuDd3zlRTDjaHmXU3Ln4,63749
-test/new-results/test.log,sha256=dZ2R4arnRWdw0bJDQ1m4oago0s8h179-YxPEdd39MSU,1859
+test/new-results/get-selection-metrics-new-simu.yaml,sha256=J-ULZD_VWM_gdc6eyD7onuQ_3j76hNbmPEX2e1sjKVI,9270
+test/new-results/test.log,sha256=PW8lc00zbHxAfwt1SVzDSy74fxhuKTpKNqqCzqmsG-o,1610
 test/new-results/test/parameters/simu/sw-cache.yaml,sha256=xRR9tZOPBIIU2d3QmiWCUcprRlXZre8BhmMONmgAcq8,24635
 test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv,sha256=9U28KM6iUMP9_3CwhOlFl5uhO2I4nBJRpKy20z5rfMc,694
 test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv,sha256=8n9PeG1kl44R8PSBy80bm-EXIUbUR2Oae53USbydt9o,2435
@@ -455,13 +455,13 @@ test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv,sha256=dm9
 test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ6_star_02.csv,sha256=-nvF_Re3o29DhELGSHCanf8UF4894aGmLvaDahgjIHo,6238
 test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv,sha256=L2u0w3IWDJKOshqCT6St6SxKKPAjq6JbY0JDH9uBMls,39711
 test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-7_star_05.csv,sha256=Ve6Y1IAOpf0ls0fwDtz7KMoMxrGtH2RadkomESpABR8,39704
-test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv,sha256=1OOMLjMahLNNNKO_5-S9SnpiH4ep2t_SkGWMIr3yHVY,12599
-test/paired/new-results/run-times.csv,sha256=LNlVTfb6QKcDyKPCRDya-1IaVECXUU5K_r_aNb4-mcg,195
-test/paired/new-results/test.log,sha256=a3ugdegPKbFUgHHvFhXkH3HSa_dvQPBa9gdb8I4coWA,72648
+test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv,sha256=pPLqsoWr7MChKJCeXfFDEo6JS4IG21TgmLzoMi5-vdQ,12593
+test/paired/new-results/run-times.csv,sha256=8s3OtPSdHdnODUQY3RfUfkwIxtSp8SSapbswBu0ROLA,193
+test/paired/new-results/test.log,sha256=t7ae_AichWBuObmWCj9ZYYDMQmoL6vIFKNZVo_F7X_s,70979
 test/paired/new-results/partition-new-simu/partition-igh.yaml,sha256=qelM_0rtDDwpLWl6_ItvkrXioZ9MI6VMiLPMf6tcbIs,71140
 test/paired/new-results/partition-new-simu/partition-igk.yaml,sha256=9iTcIjgyiVsoADqym9El14fwDT4nU_xu2mWy_UeVHSA,46688
 test/paired/new-results/partition-new-simu/partition-igl.yaml,sha256=XdV7rr3fQJPi3-5NvCxhHI4k5huOja8zxdI9XHWatMQ,23871
-test/paired/new-results/partition-new-simu/selection-metrics.yaml,sha256=hN4qho6bA693G0kW3-wzkwDUa2B9IluQMnEFRk0CawI,11330
+test/paired/new-results/partition-new-simu/selection-metrics.yaml,sha256=CPJCXzt04h_69cPRZvQk6pLaKexbfpeKRKBgaNOWtyg,11068
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-correct-family.csv,sha256=Apzy9JVSmNsEdPoVZxITXt6FZ4nVcwnrDvjMVw8yH-E,371
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-correct.csv,sha256=Apzy9JVSmNsEdPoVZxITXt6FZ4nVcwnrDvjMVw8yH-E,371
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-mispaired.csv,sha256=czqVh4ZxAreW2aCwKTHVad8buECSwn1eKK5RToGuESM,402
@@ -470,76 +470,76 @@ test/paired/new-results/partition-new-simu/true-pair-clean-performance-near-fami
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-total.csv,sha256=6H8vsJkv89E5OaepY5bg1DnptEIePK6-C6QjuaBRXv4,337
 test/paired/new-results/partition-new-simu/true-pair-clean-performance-unpaired.csv,sha256=tzXelx5oSqhgkstNA-6DGK027GYT-M4TXrFGDEWNEcg,405
 test/paired/new-results/partition-new-simu/true-pair-clean-performance.csv,sha256=EgjeHR05wFVPUvq8acCzf2LhT4c7niHXpEIoc9XyX9Q,178
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 test/paired/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa,sha256=uHZPu9HHvPAYd4yBC8o-FOdG0jH4ACJcCMhA4dmvvlY,5918
-test/paired/new-results/partition-new-simu/fasttree/iclust-0/log,sha256=qibHlOA04zulsDy_r0_-A5Bcq6-QBJQx_2E7W83yH7A,1546
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@@ -1182,7 +1182,7 @@ test/paired/new-results/seed-partition-new-simu/seeds/3542bd38d8-igh+3542bd38d8-
 test/paired/new-results/seed-partition-new-simu/seeds/3542bd38d8-igh+3542bd38d8-igk/single-chain/partition-igh.yaml,sha256=9Pxnw0p8Ug9ZMVcg7X7RMHURhxpWtpj4h93WuuVS-NY,31446
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 test/paired/new-results/subset-partition-new-simu/partition-igh.yaml,sha256=HgoqpG1_ChEuLNouoAGTWOJTKXDR9TP6y_TFxIMmprI,66188
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@@ -1206,7 +1206,7 @@ test/paired/new-results/subset-partition-new-simu/isub-0/meta.yaml,sha256=ZUaFW7
 test/paired/new-results/subset-partition-new-simu/isub-0/partition-igh.yaml,sha256=AcC85PCqK8Epm4ICu4B8q5eUjtsmlFTQwTkmMhZqQ5I,30562
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 test/paired/new-results/subset-partition-new-simu/isub-0/partition-igl.yaml,sha256=fc2SzIWy51agwAZcCTJZAfZW_-ddT-g0celyJsbelgY,7960
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@@ -1554,13 +1554,13 @@ test/paired/new-results/subset-partition-new-simu/isub-1/igk.fa,sha256=YhvxOlYRs
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@@ -1911,7 +1911,7 @@ test/paired/new-results/subset-partition-new-simu/isub-1/parameters/igl/sw/mute-
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 test/paired/new-results/subset-partition-new-simu/isub-1/single-chain/partition-igk.yaml,sha256=94nJbU045DaYvxi9ATPaYKvwDNLCckDjPU4jrtf9FIc,24028
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 test/paired/new-results/subset-partition-new-simu/merged-subsets/all-seqs.fa,sha256=nG0m8mt1u5iQdpraY0CBad3f6yoI_J4onoWZTMmgtPY,39625
@@ -1919,14 +1919,14 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/igh.fa,sha256=x
 test/paired/new-results/subset-partition-new-simu/merged-subsets/igk.fa,sha256=MZBiYYbDp-9UhHzT2EUlcFUW-M_ich_bOjQkklFfEL0,12706
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 test/paired/new-results/subset-partition-new-simu/merged-subsets/meta.yaml,sha256=VEwuIcg__0MgxPemPnj7hRiSKznNrW1-M5qLmuEtoq0,7453
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 test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igl/partition-igl.yaml,sha256=dIOx35YYPOx2RQ2e2-Qyac5qegCzHf-DyhML42ZXZIA,21443
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 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/d_gene-probs.csv,sha256=zeYbss9bxXW-xyVRkX6eBeMhPy-qiino5f0xJ5z86DI,233
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/j_gene-probs.csv,sha256=u4L0N-3x-YChG9C2unXpDbDTVzDZgfw3aChq3fHOuSk,63
@@ -1960,7 +1960,7 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/hmms/IGHV3-33_star_01.yaml,sha256=FU4oDYBlqRgZwlQrbG23AEZneBh-icKPaswTKnXojUI,103996
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/hmms/IGHV3-7_star_01.yaml,sha256=GLt0fNZJsArlWs95oE7v2E-ZKciqmRa6plG-AWAxaCg,104240
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/hmms/IGHV4-39_star_01.yaml,sha256=GGUYeGeP3CaMWhWo4B32FWDF5ohfVAJf8_QwQ9sSkp0,104436
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 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/all-mean-mute-freqs.csv,sha256=yR5AuVGrcUAOe72bT-nEJap_zn3AwCpaXSrFGELbDyA,740
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/d_gene-probs.csv,sha256=p07NACPyIrtcnGVLP8tHoSHCBiO_H7OazG_siOykHws,28
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@@ -1979,7 +1979,7 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/hmms/IGKV2-30_star_01.yaml,sha256=otPu6N94wuSVkMB8R4ZUYp0k0NLTXBreU1OCCc1VYBk,107159
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/hmms/IGKV3-11_star_01.yaml,sha256=dizIw0o2xB1DiUzb_HneMaz3yIIyxS0d2HiPCdwo2fA,102590
 test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/hmms/IGKV3-15_star_01.yaml,sha256=1z0A-rW4uPkaZ0u-3Vu9fxdBoNqsf8MXfaT6yjkaKxw,103093
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@@ -6805,6 +6805,88 @@ test/ref-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute
 test/ref-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv,sha256=PHIIaj2iqO9j_2G9QQFo7DKsra61A4_2skRWCeeonxY,152
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+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.mlTrees,sha256=SEsGc46s2he4N6Ymj6WUisG9X508e-k3hQiZhk8aiqs,4300
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.rba,sha256=irwvbRpVNNO4BxHkKrCeApDmOp04xmqxpmRbKa2UARk,770
+test/ref-results/partition-new-simu/raxml/iclust-2/input-seqs.fa.raxml.startTree,sha256=EaU6K3W0aJwOzpJYbYI05pQMxLwR2SYLjAUW7aeTvZM,4300
+test/ref-results/partition-new-simu/raxml/iclust-2/log,sha256=LBYwkUCDGlgOA8G_wThuPaYfY6cV0A1b3gGqb-Ej4Jc,18655
+test/ref-results/partition-new-simu/raxml/iclust-2/run.sh,sha256=FzQQZlbfRPnjCi1W9ElnX37LMkUrWq9_Ro-8DCJx8-Q,522
 test/ref-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv,sha256=ybPnGto_Ly4XhxcAaF48lH-eTqnlFi7GDvJ4f9dXP9Y,153
 test/ref-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv,sha256=9e7Kaol7R2sSaGRrdfRmRXRQmLKuIexslXo55oW3vv4,125
 test/ref-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv,sha256=1uCusAdxgbGGytCri7146q90JBg6SQ2Od8Gfkj4TCp8,194
@@ -8349,8 +8431,8 @@ test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV4-NL1_star_01.csv
 test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV5-10-1_star_01.csv,sha256=S075HCAZnbZpAMsXeLMmMXEGVHFs_Euk1XujtFQ46y4,41974
 test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv,sha256=QJGyDRqD2JezXsuMbNNXGSCM-kjaN2h4QGpgsaqTqXQ,57817
 test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV7-4-1_star_02.csv,sha256=k5KeCR5Qa6iEF0IEHR63DDdJStqAjcZxgZOUbKDFNaY,39977
-partis_bcr-1.0.8.dist-info/METADATA,sha256=niLP_61z5lbvRzYtCXgKBDJIRerOlKaTcG4qS0moA4o,5007
-partis_bcr-1.0.8.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-partis_bcr-1.0.8.dist-info/entry_points.txt,sha256=Q-AkAQ91YwiKNHruS32ACdY4_IQdpZhpij2EuVDmdnM,44
-partis_bcr-1.0.8.dist-info/top_level.txt,sha256=J-z0poNcsv31IHB413--iOY8LoHBKiTHeybHX3abokI,7
-partis_bcr-1.0.8.dist-info/RECORD,,
+partis_bcr-1.0.8.post1.dev1.dist-info/METADATA,sha256=bJwE60nO7EuElQRn4-I4VZcue1xAq9f741Y300w-C6k,5018
+partis_bcr-1.0.8.post1.dev1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+partis_bcr-1.0.8.post1.dev1.dist-info/entry_points.txt,sha256=Q-AkAQ91YwiKNHruS32ACdY4_IQdpZhpij2EuVDmdnM,44
+partis_bcr-1.0.8.post1.dev1.dist-info/top_level.txt,sha256=J-z0poNcsv31IHB413--iOY8LoHBKiTHeybHX3abokI,7
+partis_bcr-1.0.8.post1.dev1.dist-info/RECORD,,

test/new-results/get-selection-metrics-new-simu.yaml ADDED Viewed

@@ -0,0 +1 @@

+ [{"unique_ids": ["18f4019708", "308de1d739", "5fb484a8a6", "648902c3e5", "8024ed1a22", "822801f8ab", "d024e5cab0", "ee25049b92", "efdea248af", "f47122f1f5", "9c3cedb840", "Node3", "Node4", "Node5", "Node6", "Node7", "Node8"], "lb": {"tree": "[&R] ((d024e5cab0:1e-06,(efdea248af:0.00873,(308de1d739:0.011636,(5fb484a8a6:0.014574,((ee25049b92:0.005817,9c3cedb840:0.002896)Node6:0.011689,(18f4019708:0.014595,((f47122f1f5:1e-06)648902c3e5:1e-06)8024ed1a22:0.005797)Node8:1e-06)Node7:1e-06)Node5:1e-06)Node4:1e-06)Node3:0.005798)822801f8ab:1e-06)XnaiveX;\n", "cons-dist-aa": {"18f4019708": -3, "308de1d739": -3, "5fb484a8a6": -3, "648902c3e5": -2, "8024ed1a22": -2, "822801f8ab": -2, "d024e5cab0": -2, "ee25049b92": -5, "efdea248af": -2, "f47122f1f5": -2, "9c3cedb840": -4, "Node3": 0, "Node4": 0, "Node5": 0, "Node6": -4, "Node7": 0, "Node8": 0}, "lbi": {"d024e5cab0": 0.28013970011757816, "efdea248af": 0.03871974633146609, "308de1d739": 0.013839327627624387, "5fb484a8a6": 0.0049095286010898374, 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{"97366cf0d8": 0.0, "20a0129b57": 0.0, "33aaa62e12": 0.3888074011682412, "4233d708fe": 0.38883388299041577, "13de8675ec": 1.2719619593362566, "31e052ee14": 1.2718613901477076, "91796617a0": 1.2717608581752964, "XnaiveX": 0.0}, "lbf": {"97366cf0d8": 0.0, "20a0129b57": 0.0, "33aaa62e12": 5.288760573324845, "4233d708fe": 5.289881202683325, "13de8675ec": 10.579761990810486, "31e052ee14": 10.578925311768877, "91796617a0": 10.578088942241255, "XnaiveX": 10.577252882113111}, "aa-tree": "[&R] ((((97366cf0d8:0.0,((20a0129b57:0.0)33aaa62e12:0.0)4233d708fe:0.0)13de8675ec:0.0)31e052ee14:0.0)91796617a0:0.0)XnaiveX;\n", "aa-lbi": {"97366cf0d8": -7.816792314480525e-06, "20a0129b57": -7.816792314480525e-06, "33aaa62e12": -7.816792314480525e-06, "4233d708fe": -7.816792314480525e-06, "13de8675ec": -7.816792314480525e-06, "31e052ee14": -7.816792314480525e-06, "91796617a0": -7.816792314480525e-06, "XnaiveX": -7.816792314480525e-06}, "aa-lbr": {"97366cf0d8": 0.0, "20a0129b57": 0.0, "33aaa62e12": 0.0, 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((73d6c6e558:0.023809523809523808,(c8a90cc3d7:0.03968253968253968,(((73431a9b10:0.0)bf50fa2017:0.007936507936507936,948b83fb4d:0.007936507936507936)Node2:0.0,(17f57acf2e:0.0,162cb1691f:0.015873015873015872)Node5:0.015873015873015872)Node6:0.007936507936507936)Node4:0.0)Node3:0.0)XnaiveX;\n", "aa-lbi": {"73d6c6e558": 4.3481144978049015e-05, "c8a90cc3d7": 1.0607562094404073e-07, "73431a9b10": 0.017443587693578136, "bf50fa2017": 0.017443587693578136, "948b83fb4d": 0.017443587693578136, "Node2": 0.5169670843045983, "17f57acf2e": 0.1727435913001429, "162cb1691f": 2.05140302349672e-06, "Node5": 0.1727435913001429, "Node6": 0.5169670843045983, "Node4": 0.5331232824754037, "Node3": 0.5331232824754035, "XnaiveX": 0.5331232824754037}, "aa-lbr": {"73d6c6e558": 0.0, "c8a90cc3d7": 0.0, "73431a9b10": 0.0, "bf50fa2017": 0.0, "948b83fb4d": 0.0, "Node2": 0.905868885568473, "17f57acf2e": 0.0, "162cb1691f": 0.0, "Node5": 0.9927164071332475, "Node6": 2.6403923115855674, "Node4": 1.047040340433685, 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test/new-results/test.log CHANGED Viewed

@@ -1,34 +1,30 @@
 [92mcache-parameters-quick-new-simu[0m   partis cache-parameters --dont-write-git-info --infname test/ref-results/test/simu.yaml --parameter-dir test/new-results/test/parameters/simu --sw-cachefname test/new-results/test/parameters/simu/sw-cache.yaml --n-max-queries 10 --random-seed 1 --n-procs 10
   --n-max-queries: stopped after reading 10 queries from input file
 caching parameters
-  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.1 sec
+  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.0 sec
     keeping 2 / 198 v genes
 smith-waterman  (new-allele fitting)
-  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.1 sec
+  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.0 sec
     running 10 procs for 10 seqs
       info for 10 / 10 = 1.000   (removed: 0 failed)
       kept 10 (1.000) unproductive
-    water time: 0.2  (ig-sw 0.0  processing 0.2)
+    water time: 0.0  (ig-sw 0.0  processing 0.0)
 smith-waterman  (writing parameters)
-  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.2 sec
+  vsearch: 10 / 10 v annotations (0 failed) with 2 v genes in 0.0 sec
     running 10 procs for 10 seqs
       info for 10 / 10 = 1.000   (removed: 0 failed)
       kept 10 (1.000) unproductive
         writing sw results to test/new-results/test/parameters/simu/sw-cache.yaml
-    writing parameters to test/new-results/test/parameters/simu/sw (9.2 sec)
-    water time: 9.7  (ig-sw 9.3  processing 0.4)
+    writing parameters to test/new-results/test/parameters/simu/sw (1.3 sec)
+    water time: 1.3  (ig-sw 1.3  processing 0.0)
   writing hmms     removed 35 genes from glfo (leaving v 2  d 1  j 2)
-  note: utils.memory_usage_fraction() needs testing on platform 'Darwin' to make sure unit conversions don't need changing
-(0.3 sec)
+(0.1 sec)
 hmm
     reading output
         read 10 hmm output lines with 10 sequences in 10 events  (0 failures)
-    writing parameters to test/new-results/test/parameters/simu/hmm (0.4 sec)
-         infra time: 0.5
-      hmm step time: 0.9
+    writing parameters to test/new-results/test/parameters/simu/hmm (0.2 sec)
+         infra time: 0.2
+      hmm step time: 0.4
   writing hmms     removed 0  genes from glfo (leaving v 2  d 1  j 2)
-  note: utils.memory_usage_fraction() needs testing on platform 'Darwin' to make sure unit conversions don't need changing
-(0.3 sec)
-      total time: 11.9
+(0.1 sec)
+      total time: 2.1

test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv CHANGED Viewed

@@ -1,11 +1,11 @@
 iclust,h_id,l_id,aa-cfrac,aa-cdist,tot-shm-aa,tot-shm-nuc-pct,lbi,lbr,aa-lbi,aa-lbr,h_family_size,l_family_size,h_v_gene,l_v_gene,h_d_gene,l_d_gene,h_j_gene,l_j_gene,h_locus,l_locus,h_imgt_cdr3_length_aa,l_imgt_cdr3_length_aa,h_shm_nuc_pct,l_shm_nuc_pct,h_shm_aa,l_shm_aa,h_has_shm_indels,l_has_shm_indels,h_aa-cfrac,l_aa-cfrac,h_aa-cdist,l_aa-cdist,h_seq_nuc,l_seq_nuc,h_seq_aa,l_seq_aa
 0,0174bcb6-cons-0-igh,b4a54dee-cons-0-igl,,,,,,,,,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,,,,,,,False,False,,,,,CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQLQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIYYSGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIARDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,b02ee7754a-igh,b02ee7754a-igl,0.00423728813559322,-1,19,0.04481792717086835,0.019310368159540466,0.0,0.019310368159540466,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06382978723404255,0.023952095808383235,15,4,True,False,0.016,0.0,-2,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPRDW*CLRRPYPSPALALVAPSAVVVTTGARSASPQVRGWTGLGVSIIVGAPTTTSLSRVESPYP*TRPRTSSP*S*GL*PRQTRLRITVRASNVKQYLLLPSLATTGAREPWFPSPQ,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,8d79fca804-igh,8d79fca804-igl,0.00847457627118644,-2,20,0.046218487394957986,0.039787305283910654,0.0,0.039787305283910654,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.061170212765957445,0.029940119760479042,15,5,False,False,0.016,0.009009009009009009,-2,-1,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCGTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCGAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIYYSGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPELLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,a3baa83300-igh,a3baa83300-igl,0.012711864406779662,-3,21,0.049019607843137254,0.0045837356800101274,0.0,0.0045837356800101274,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06914893617021277,0.02694610778443114,17,4,False,False,0.032,0.0,-4,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTAAAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCTAGCAATGTAAAACAGTACCTCCTACGTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCGTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIY*SGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCAS*QCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,b1e56e40a1-igh,b1e56e40a1-igl,0.0211864406779661,-5,23,0.05042016806722689,0.0008112377629780348,0.0,0.0008112377629780348,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.07446808510638298,0.023952095808383235,19,4,True,False,0.048,0.0,-6,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQTPGKGLEWIGTIYYITGSTYYDQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIARDFWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
-0,a2238f4e9a-igh,a2238f4e9a-igl,0.08050847457627118,-19,24,0.06162464985994398,1.2657710302861883e-12,0.0,1.2657710302861883e-12,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.09840425531914894,0.020958083832335328,21,3,True,False,0.12,0.02702702702702703,-15,-3,CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG,TAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCGCCAAGTCTGGCACCTCGGCCTCCCTGGCCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQLQESGPGLVMPSETLFLTCTVSGGSISSSSYYRGSIRQPPSKGLEWIGSIYYSVSTTTTSLSRVESPYP*TRPRTSSP*N*AL*LPQKRRRITVRESKATQYPPLSSNGTTGAREPWLPSPQ,*SVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGAKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,b02ee7754a-igh,b02ee7754a-igl,0.00423728813559322,-1,19,0.04481792717086835,0.01809935006069261,0.0,0.01809935006069261,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06382978723404255,0.023952095808383235,15,4,True,False,0.016,0.0,-2,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAAGGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGACTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGCTCGCGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPRDW*CLRRPYPSPALALVAPSAVVVTTGARSASPQVRGWTGLGVSIIVGAPTTTSLSRVESPYP*TRPRTSSP*S*GL*PRQTRLRITVRASNVKQYLLLPSLATTGAREPWFPSPQ,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,8d79fca804-igh,8d79fca804-igl,0.00847457627118644,-2,20,0.046218487394957986,0.03751771597389149,0.0,0.03751771597389149,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.061170212765957445,0.029940119760479042,15,5,False,False,0.016,0.009009009009009009,-2,-1,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCTCCTACTTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCGTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCGAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIYYSGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPELLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,a3baa83300-igh,a3baa83300-igl,0.012711864406779662,-3,21,0.049019607843137254,0.004279582137972093,0.0,0.004279582137972093,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.06914893617021277,0.02694610778443114,17,4,False,False,0.032,0.0,-4,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAGGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTAAAGTGGGAGCACCTACTACAACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCTAGCAATGTAAAACAGTACCTCCTACGTCCATCGGTCGAGACTACTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCGTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQPPGKGLEWIGSIY*SGSTYYNQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCAS*QCKTVPPTSIGRDYWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,b1e56e40a1-igh,b1e56e40a1-igl,0.0211864406779661,-5,23,0.05042016806722689,0.0007009953003826337,0.0,0.0007009953003826337,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.07446808510638298,0.023952095808383235,19,4,True,False,0.048,0.0,-6,0,CAGCTGCAGCAGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTATCCCTCACCTGCACTGGCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGACCCCAGGTAAGGGGCTGGAGTGGATTGGGACTATCTATTACATTACTGGGAGCACCTACTACGACCAGTCCCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGGTCTGTGACCGCGGCAGACACGGCTGCGTATTACTGTGCGAGCGAGCAATGTAAAACAGTACCACCTACTTCCATCGCTCGAGACTTCTGGGGCCAGGGAACCCTGGTTCCCGTCTCCTCAG,TAGTCTGTGCTGACGCGGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGACCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQQQESGPGLVMPSETLSLTCTGSGGSISSSSYYRGSIRQTPGKGLEWIGTIYYITGSTYYDQSLKSRVSISVDTSKNQFSLKLRSVTAADTAAYYCASEQCKTVPPTSIARDFWGQGTLVPVSSX,*SVLTRPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLTITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
+0,a2238f4e9a-igh,a2238f4e9a-igl,0.08050847457627118,-19,24,0.06162464985994398,1.3358608458698337e-12,0.0,1.3358608458698337e-12,0.0,8,8,IGHV4-39*01,IGLV1-40*01,IGHD6-19*01,IGLDx-x*x,IGHJ4*02,IGLJ1*01,igh,igl,17,11,0.09840425531914894,0.020958083832335328,21,3,True,False,0.12,0.02702702702702703,-15,-3,CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGATGCCTTCGGAGACCTTGTTCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACAGGGGCTCGATCCGCCAGCCCCCAAGTAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGTGAGCACCACTACAACCAGTCTCTCAAGAGTCGAGTCTCCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAACTGAGCTCTGTGACTCCCGCAGAAACGGCGGCGTATTACTGTGCGAGAAAGCAAAGCGACACAGTACCCCCCACTGTCCTCGAACGGGACTACTGGGGCCAGGGAACCCTGGTTACCGTCTCCTCAG,TAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTAAACTGGTACCAGCAGCTTCCAGGCACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCGCCAAGTCTGGCACCTCGGCCTCCCTGGCCATCACAGGGCTCCAGGCAGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG,QLQLQESGPGLVMPSETLFLTCTVSGGSISSSSYYRGSIRQPPSKGLEWIGSIYYSVSTTTTSLSRVESPYP*TRPRTSSP*N*AL*LPQKRRRITVRESKATQYPPLSSNGTTGAREPWLPSPQ,*SVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVNWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGAKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLX
 1,c67c004f-cons-1-igh,f6b67e1f-cons-1-igk,,,,,,,,,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,,,,,,,False,False,,,,,NNNCAGGTGCAGCTGATGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGAGGCGATTTTGGGTTTGGTTAGTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLMESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAGGDFGFG*YGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
-1,c0fcfe005f-igh,c0fcfe005f-igk,0.02553191489361702,-6,8,0.019204389574759947,0.009230342127102087,0.0,0.009230342127102087,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,8,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGCGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTGCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCCGGGTGAGATTTTGGGTTTGGTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLAESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADCVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFGYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
-1,d1ee7f9ce6-igh,d1ee7f9ce6-igk,0.02553191489361702,-6,7,0.01646090534979424,0.09637773660309717,0.0,0.09637773660309717,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.031413612565445025,0.0,7,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTGAGATTTTGGGTTTGCTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFAYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
-1,665985d2d1-igh,665985d2d1-igk,0.02553191489361702,-6,9,0.019204389574759947,0.008698389290064869,0.0,0.008698389290064869,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,9,0,False,True,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTTAGATTTTGGGTTTGGTTAGTGTGCGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCATAAGGCGACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAGLDFGFG*CANNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIA*GDILLSTV**SPSAHFRRRDQGGDQT
+1,c0fcfe005f-igh,c0fcfe005f-igk,0.02553191489361702,-6,8,0.019204389574759947,0.009194049754989489,0.0,0.009194049754989489,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,8,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGCGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTGCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCCGGGTGAGATTTTGGGTTTGGTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLAESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADCVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFGYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
+1,d1ee7f9ce6-igh,d1ee7f9ce6-igk,0.02553191489361702,-6,7,0.01646090534979424,0.09699719743663368,0.0,0.09699719743663368,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.031413612565445025,0.0,7,0,False,False,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTGAGATTTTGGGTTTGCTTACTATGGGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAG*DFGFAYYGNNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPRLTFGGGTKVEIKX
+1,665985d2d1-igh,665985d2d1-igk,0.02553191489361702,-6,9,0.019204389574759947,0.008819474476511727,0.0,0.008819474476511727,0.0,7,7,IGHV3-33*01,IGKV1-33*01,IGHD3-3*01,IGKDx-x*x,IGHJ5*02,IGKJ4*01,igh,igk,20,10,0.03664921465968586,0.0,9,0,False,True,0.047244094488188976,0.0,-6,0,NNNCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCACCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCATCTGGATTCACCGTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGAATTACTGTGCGAGAGAGGCTGGGTTAGATTTTGGGTTTGGTTAGTGTGCGAACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG,NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCATAAGGCGACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC,XQVQLVESGGGVVHPGRSLRLSCAASGFTVSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVNYCAREAGLDFGFG*CANNWFDPWGQGTLVTVSSX,XXXXXDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIA*GDILLSTV**SPSAHFRRRDQGGDQT

test/paired/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out CHANGED Viewed

	@@ -1 +1 @@
1	- (b02ee7754a_contig_igh+igl:0.~~004382130~~,(a2238f4e9a_contig_igh+igl:0.~~036055485~~,(XnaiveX:0.~~018594844~~,(0eb272ee70_contig_igh+igl:0.~~042844768~~,aa25e6c0ce_contig_igh+igl:0.~~033371995~~)0.~~825~~:0.~~005332184~~)0.970:0.~~011641835~~)0.~~990~~:0.~~015195020~~,(b1e56e40a1_contig_igh+igl:0.~~008795952~~,(8d79fca804_contig_igh+igl:0.~~002923944~~,a3baa83300_contig_igh+igl:0.~~005856600~~)0.~~761~~:0.~~001458648~~)0.~~890~~:0.~~000000005~~);
1	+ (b02ee7754a_contig_igh+igl:0.00420,(a2238f4e9a_contig_igh+igl:0.03598,(XnaiveX:0.01859,(0eb272ee70_contig_igh+igl:0.04284,aa25e6c0ce_contig_igh+igl:0.03337)0.826:0.00533)0.970:0.01172)0.989:0.01515,(b1e56e40a1_contig_igh+igl:0.00880,(8d79fca804_contig_igh+igl:0.00292,a3baa83300_contig_igh+igl:0.00586)0.779:0.00144)0.972:0.00053);

partis-bcr 1.0.8__py3-none-any.whl → 1.0.8.post1.dev1__py3-none-any.whl

partis-bcr 1.0.8py3-none-any.whl → 1.0.8.post1.dev1py3-none-any.whl