partis-bcr 1.0.11.post1.dev3__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev7__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (57) hide show
  1. bin/partis-test.py +3 -3
  2. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +3 -3
  3. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  4. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +57 -56
  5. test/new-results/partition-new-simu/fasttree/iclust-0/log +3 -3
  6. test/new-results/run-times.csv +4 -4
  7. test/new-results/test/simu.yaml +1 -1
  8. test/new-results/test.log +24 -24
  9. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +2 -2
  10. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +4 -4
  11. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +4 -4
  12. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  13. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  14. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  15. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  16. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  17. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  18. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  19. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  20. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  21. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  22. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  23. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  24. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  25. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  26. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  27. test/paired/new-results/run-times.csv +7 -7
  28. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +2 -2
  29. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +2 -2
  30. test/paired/new-results/subset-partition-new-simu/merged-partition.log +3 -3
  31. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  32. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  33. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  34. test/paired/new-results/test/simu/all-seqs.fa +168 -212
  35. test/paired/new-results/test/simu/igh+igk/igh.yaml +1 -1
  36. test/paired/new-results/test/simu/igh+igk/igk.yaml +1 -1
  37. test/paired/new-results/test/simu/igh+igl/igh.yaml +1 -1
  38. test/paired/new-results/test/simu/igh+igl/igl.yaml +1 -1
  39. test/paired/new-results/test/simu/igh.yaml +1 -1
  40. test/paired/new-results/test/simu/igk.yaml +1 -1
  41. test/paired/new-results/test/simu/igl.yaml +1 -1
  42. test/paired/new-results/test/simu/meta.yaml +1 -1
  43. test/paired/new-results/test.log +97 -109
  44. test/test.py +3 -3
  45. test/trees.nwk +100 -0
  46. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  47. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  48. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  49. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  50. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  51. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  52. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  53. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  54. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  55. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  56. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  57. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0