partis-bcr 1.0.11.post1.dev3__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev7__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (57) hide show
  1. bin/partis-test.py +3 -3
  2. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +3 -3
  3. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  4. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +57 -56
  5. test/new-results/partition-new-simu/fasttree/iclust-0/log +3 -3
  6. test/new-results/run-times.csv +4 -4
  7. test/new-results/test/simu.yaml +1 -1
  8. test/new-results/test.log +24 -24
  9. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +2 -2
  10. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +4 -4
  11. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +4 -4
  12. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  13. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  14. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  15. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  16. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  17. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  18. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  19. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  20. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  21. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  22. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  23. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  24. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  25. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  26. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  27. test/paired/new-results/run-times.csv +7 -7
  28. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +2 -2
  29. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +2 -2
  30. test/paired/new-results/subset-partition-new-simu/merged-partition.log +3 -3
  31. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  32. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  33. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  34. test/paired/new-results/test/simu/all-seqs.fa +168 -212
  35. test/paired/new-results/test/simu/igh+igk/igh.yaml +1 -1
  36. test/paired/new-results/test/simu/igh+igk/igk.yaml +1 -1
  37. test/paired/new-results/test/simu/igh+igl/igh.yaml +1 -1
  38. test/paired/new-results/test/simu/igh+igl/igl.yaml +1 -1
  39. test/paired/new-results/test/simu/igh.yaml +1 -1
  40. test/paired/new-results/test/simu/igk.yaml +1 -1
  41. test/paired/new-results/test/simu/igl.yaml +1 -1
  42. test/paired/new-results/test/simu/meta.yaml +1 -1
  43. test/paired/new-results/test.log +97 -109
  44. test/test.py +3 -3
  45. test/trees.nwk +100 -0
  46. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  47. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  48. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  49. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  50. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  51. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  52. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  53. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  54. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  55. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  56. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  57. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0
test/paired/new-results/test/simu/igk.yaml CHANGED
@@ -1 +1 @@
1
- {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igk", "functionalities": {}, "seqs": {"v": {"IGKV1-12*01": "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTCC", "IGKV1-27*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTATCAGCAGAAACCAGGGAAAGTTCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAATCAGGGGTCCCATCTCGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATGTTGCAACTTATTACTGTCAAAAGTATAACAGTGCCCCTCC", "IGKV1-33*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCC", "IGKV1-5*01": "GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCC", "IGKV1-8*03": "GCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCC", "IGKV1-9*01": "GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCC", "IGKV1D-13*02": "GCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGTTTAATAGTTACCCTCA", "IGKV1D-39*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCC", "IGKV2-24*01": "GATATTGTGATGACCCAGACTCCACTCTCCTCACCTGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTACACAGTGATGGAAACACCTACTTGAGTTGGCTTCAGCAGAGGCCAGGCCAGCCTCCAAGACTCCTAATTTATAAGATTTCTAACCGGTTCTCTGGGGTCCCAGACAGATTCAGTGGCAGTGGGGCAGGGACAGATTTCACACTGAAAATCAGCAGGGTGGAAGCTGAGGATGTCGGGGTTTATTACTGCATGCAAGCTACACAATTTCCTCA", "IGKV2-30*01": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC", "IGKV2D-28*01": "GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTCC", "IGKV3-11*01": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC", "IGKV3-15*01": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC", "IGKV3-20*01": "GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTCC", "IGKV4-1*02": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCCTCC", "IGKV6-21*01": "GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTACCTCA"}, "d": {"IGKDx-x*x": "A"}, "j": {"IGKJ1*01": "GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "IGKJ2*01": "TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*03": "TGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*04": "TGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ3*01": "ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "IGKJ4*01": "GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "IGKJ5*01": "GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"}}, "cyst-positions": {"IGKV1-5*01": 261, "IGKV1-9*01": 261, "IGKV3-20*01": 264, "IGKV2-24*01": 276, "IGKV1-33*01": 261, "IGKV1-12*01": 261, "IGKV2D-28*01": 276, "IGKV1-27*01": 261, "IGKV6-21*01": 261, "IGKV3-11*01": 261, "IGKV1D-39*01": 261, "IGKV1D-13*02": 261, "IGKV3-15*01": 261, "IGKV4-1*02": 279, "IGKV2-30*01": 276, "IGKV1-8*03": 261}, "phen-positions": {"IGKJ3*01": 7, "IGKJ5*01": 7, "IGKJ4*01": 7, "IGKJ2*04": 8, "IGKJ2*03": 8, "IGKJ2*01": 8, "IGKJ1*01": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 7, "n_procs": 1, "partition": [["6728f9fb1f-igk", "84b9b0a5db-igk", "25beda54e8-igk", "a385b6b9c0-igk", "762f4ed65b-igk", "293677779b-igk", "539dc7162b-igk", "7fc27267b4-igk", "c074eb0544-igk", "5414307e18-igk", "1dc717a47d-igk", "fa79e38212-igk"], ["3590a73b2b-igk", "486333046a-igk"], ["5b83db58bc-igk", "70cc01a590-igk", "8c82b5df7c-igk"], ["dde37df0f3-igk", "4e698cd55b-igk"], ["a32678cdd4-igk"], ["4879a2a0d7-igk", "7777388536-igk", "69e29aff11-igk", "c449e7d496-igk", "b8dd0bbe5b-igk", "831950bd07-igk", "1df0b0d259-igk", "2bbe5f9b28-igk", "9f7c316b7a-igk"], ["2b1422c0aa-igk", "5cb34a1703-igk", "053a8abb6c-igk", "39fc72ec75-igk", "d3edbb8447-igk", "031d868683-igk", "1b28490bf6-igk"]]}], "events": [{"qr_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGTCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCA.......AGCAGCAACTTAACCTGGTACCAGCAGAAACCTGGCCAGGCCCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCACAGGTTCAGTGGCAGTGGCTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTGTTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "", "", "", "", "", "", "", "", "", "GAAATAGTGATGACGCAGTCTCCAGC....CTGTCTGTGTCTCCACGGGAAAGAGTCACCCTCTCCTGCAGAGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAATCTGGCCAGGCTCCCAGGCTCCTCATCTTTGGTGCATCCACCAGAGCCACTGGTTGTGGTAATATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGTAGTTTATTACTGTTAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGAAGTTTTAGTCGCAGTCTCCAGCCACCCTGTCTGTGTCTACAGGGGGAAGAGCCACCCTCTCCTCCAGGGTCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTG....................................GTGCCAGTGGATCTGGGACAGAGTTCACTCTCACCATTAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC"], "gl_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGC..CAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "", "", "", "", "", "", "", "", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGG.........TATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGA.........CGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "indel_reversed_seqs": ["GAAATAGTGATGACGCAGTCTCCAGTCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAACCTGGTACCAGCAGAAACCTGGCCAGGCCCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGCTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTGTTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "", "", "", "", "", "", "", "", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCACGGGAAAGAGTCACCCTCTCCTGCAGAGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAATCTGGCCAGGCTCCCAGGCTCCTCATCTTTGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGTAGTTTATTACTGTTAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTACAGGGGGAAGAGCCACCCTCTCCTCCAGGGTCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGCCAGTGGATCTGGGACAGAGTTCACTCTCACCATTAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC"], "reco_id": "8a9d39afe0", "tree": "[&R] ((((5414307e18-igk:0.008502932147128023,1dc717a47d-igk:0.008502932147128023)ajt:0.008122880405858672,(((c074eb0544-igk:0.014991685301204651,(fa79e38212-igk:0.014055471951124665,(84b9b0a5db-igk:0.013541867892427785,293677779b-igk:0.013541867892427785)oux:0.00051360406210676)hxy:0.0009362133446551766)ijo:0.000864750165343496,25beda54e8-igk:0.015856435462673284)lot:0.00011011364305165203,(6728f9fb1f-igk:0.015715928326901298,((539dc7162b-igk:0.0037746814180675773,7fc27267b4-igk:0.0037746814180675773)dmy:0.009194508628349793,762f4ed65b-igk:0.012969190047967318)jmo:0.0027467382742841456)flx:0.000250620783163485)lmr:0.0006592634473392585)gvw:0.000310518390578505,a385b6b9c0-igk:0.016936330943797692)jwy:0.0018146457098906887)bkq:0.0;", "unique_ids": ["6728f9fb1f-igk", "84b9b0a5db-igk", "25beda54e8-igk", "a385b6b9c0-igk", "762f4ed65b-igk", "293677779b-igk", "539dc7162b-igk", "7fc27267b4-igk", "c074eb0544-igk", "5414307e18-igk", "1dc717a47d-igk", "fa79e38212-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.018808777429467086, 0.03761755485893417, 0.03134796238244514, 0.018808777429467086, 0.01567398119122257, 0.02821316614420063, 0.018808777429467086, 0.012539184952978056, 0.034482758620689655, 0.02821316614420063, 0.02821316614420063, 0.03134796238244514], "n_mutations": [6, 12, 10, 6, 5, 9, 6, 4, 11, 9, 9, 10], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGTCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAAGCAGCAACTTAACCTGGTACCAGCAGAAACCTGGCCAGGCCCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCACAGGTTCAGTGGCAGTGGCTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTGTTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACTCTGTCTGTGTCTCCAGGGGGAAGGGCCACCCTCTCCTGCAGGGCCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACATGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTAGTATCCCAACCAAGTTCAGTGCCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTTTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAAGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACGAGCAGAAACCTCGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAAAGCCACTGGTATCCCAGCCAGGTTCAGTGCCAGTGGGTCTGGGACAGAGTTCACTCTCACGACCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCACCAGTATAATAACTGGTGGACGTTCGGCCAAGGGGCCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGACCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTATCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCTTCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCCCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTAGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCTGCCACCCTGTCTCTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCATCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGAGGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGGAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTATTAGCAGCAACTTAGCCTGTTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCTTCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGCCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGCTTATTACTGTCAGCAGTATAATAACTGGTGGACATTCGGCCAAGGGACCAAGGTGGAAATCAAGC", "GAAATAGTGATGACGCTGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCGGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGTCTCCTCATCTATGGTGGATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTACTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCGGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGTCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTACTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCAGCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGAAGGGCCAGTCAAAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTACCCCAGCCAGGTTCAGTGCGAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAATTTATTACTGTCAGCGGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC", "GAAATAGTGATGACGCAGTCTCCACCCACCCTGTCTGTGTCTCCACGGGAAAGAGCCACCCTCTCCTGCAGGGCTAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATATTTGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCGCTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTCCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCTGTCTGTGTCTCCACGGGAAAGAGTCACCCTCTCCTGCAGAGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAATCTGGCCAGGCTCCCAGGCTCCTCATCTTTGGTGCATCCACCAGAGCCACTGGTTGTGGTAATATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGTAGTTTATTACTGTTAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGAAGTTTTAGTCGCAGTCTCCAGCCACCCTGTCTGTGTCTACAGGGGGAAGAGCCACCCTCTCCTCCAGGGTCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGGTGCCAGTGGATCTGGGACAGAGTTCACTCTCACCATTAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC"], "has_shm_indels": [true, false, false, false, false, false, false, false, false, false, true, true], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [false, true, true, true, true, true, true, true, true, true, false, true], "stops": [true, false, false, true, false, false, false, false, true, false, true, true], "paired-uids": [["6728f9fb1f-igh"], [], ["25beda54e8-igh", "5d404a8547-igh", "5d404a8547-igl"], ["a385b6b9c0-igh"], [], ["293677779b-igh"], ["11f41b5f10-igh", "539dc7162b-igh"], ["45de550151-igl", "7fc27267b4-igh"], ["6d2eb72d4b-igh", "c074eb0544-igh"], ["5414307e18-igh"], ["1dc717a47d-igh"], ["fa79e38212-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 288}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "ca482b4daf", "tree": "[&R] (((1bb77dbdd8-igk:-0.0,486333046a-igk:-0.0)jux:0.0,3590a73b2b-igk:-0.0)egh:-0.0)hmv:0.0;", "unique_ids": ["3590a73b2b-igk", "486333046a-igk"], "invalid": false, "v_gene": "IGKV3-11*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "naive_seq": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["3590a73b2b-igh"], ["486333046a-igh"]], "loci": ["igk", "igk"], "codon_positions": {"v": 261, "j": 294}}, {"qr_gap_seqs": ["", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCAGCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "gl_gap_seqs": ["", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCC..CAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "indel_reversed_seqs": ["", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "reco_id": "8ff5ec4520", "tree": "[&R] ((70cc01a590-igk:-0.0,(5b83db58bc-igk:-0.0,8c82b5df7c-igk:-0.0)euv:0.0)doz:-0.0)alx:0.0;", "unique_ids": ["5b83db58bc-igk", "70cc01a590-igk", "8c82b5df7c-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCAGCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false, false, true], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[], [], []], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, false], "stops": [false, false, false], "paired-uids": [["504e3941e6-igh", "504e3941e6-igl", "5b83db58bc-igh"], ["fa02aeb02e-igh"], ["8c82b5df7c-igh"]], "loci": ["igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 288}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "6564755f20", "tree": "[&R] ((4e698cd55b-igk:0.001172468977992632,dde37df0f3-igk:0.001172468977992632)dku:0.0014777104579907138)mrx:0.0;", "unique_ids": ["dde37df0f3-igk", "4e698cd55b-igk"], "invalid": false, "v_gene": "IGKV1-12*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.003105590062111801], "n_mutations": [0, 1], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACGATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC"], "has_shm_indels": [false, false], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[], []], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["dde37df0f3-igh"], ["4e698cd55b-igh"]], "loci": ["igk", "igk"], "codon_positions": {"v": 261, "j": 291}}, {"has_shm_indels": [true], "qr_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAA..................GGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGAC....TTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "gl_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "indel_reversed_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "reco_id": "b2144fab8e", "tree": "[&R] ((a32678cdd4-igk:-0.0,6daaa9b771-igk:-0.0)ads:-0.0)aeh:0.0;", "unique_ids": ["a32678cdd4-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [false], "paired-uids": [["a32678cdd4-igh", "fd0c4f0f17-igh", "fd0c4f0f17-igl"]], "loci": ["igk"], "codon_positions": {"v": 261, "j": 288}}, {"qr_gap_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAA..AGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "", "", "", "", "", "", "", ""], "gl_gap_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "", "", "", "", "", "", "", ""], "reco_id": "182e588062", "tree": "[&R] ((((c449e7d496-igk:-0.0,2bbe5f9b28-igk:-0.0)doz:-0.0,((1df0b0d259-igk:-0.0,4879a2a0d7-igk:-0.0)kow:-0.0,b8dd0bbe5b-igk:-0.0)juy:-0.0)lpx:-0.0,(7777388536-igk:-0.0,((69e29aff11-igk:-0.0,831950bd07-igk:-0.0)cqx:-0.0,9f7c316b7a-igk:-0.0)jsy:-0.0)kuz:-0.0)aej:-0.0)bwx:0.0;", "unique_ids": ["4879a2a0d7-igk", "7777388536-igk", "69e29aff11-igk", "c449e7d496-igk", "b8dd0bbe5b-igk", "831950bd07-igk", "1df0b0d259-igk", "2bbe5f9b28-igk", "9f7c316b7a-igk"], "invalid": false, "v_gene": "IGKV4-1*02", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "n_mutations": [0, 0, 0, 0, 0, 0, 0, 0, 0], "input_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAAAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [true, false, false, false, false, false, false, false, false], "naive_seq": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[], [], [], [], [], [], [], [], []], "v_3p_del": 4, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false], "in_frames": [false, true, true, true, true, true, true, true, true], "stops": [true, false, false, false, false, false, false, false, false], "paired-uids": [["4879a2a0d7-igh"], ["7777388536-igh"], ["1bd9242383-igl", "69e29aff11-igh"], ["c449e7d496-igh"], ["b8dd0bbe5b-igh"], ["831950bd07-igh"], ["1df0b0d259-igh"], ["2bbe5f9b28-igh"], ["9f7c316b7a-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 279, "j": 309}}, {"has_shm_indels": [false, false, false, false, true, true, false], "qr_gap_seqs": ["", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCT...TCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGTCCCTAACGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCGCTTGGGACAGATTTCACTCTCACCATCACCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAG...ACCAAGCTGGAGATCAAAC", ""], "gl_gap_seqs": ["", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAA.GCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATC...TGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", ""], "indel_reversed_seqs": ["", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGTCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", ""], "reco_id": "d217d13f25", "tree": "[&R] ((053a8abb6c-igk:0.002579919728288003,(((5cb34a1703-igk:0.00022332081592492988,f5dedfcd67-igk:0.00022332081592492988)uvy:0.0007244571733808729,(2b1422c0aa-igk:0.0005927327741661682,39fc72ec75-igk:0.0005927327741661682)lqu:0.00035504521513963453)efv:0.0013234461181477395,((1b28490bf6-igk:0.0018482221322063217,d3edbb8447-igk:0.0018482221322063217)hlv:2.8527657173184614e-05,031d868683-igk:0.0018767497892095062)gpw:0.0003944743181440362)gly:0.00030869562073446047)pqv:7.025970777784327e-05)cuy:0.0;", "unique_ids": ["2b1422c0aa-igk", "5cb34a1703-igk", "053a8abb6c-igk", "39fc72ec75-igk", "d3edbb8447-igk", "031d868683-igk", "1b28490bf6-igk"], "invalid": false, "v_gene": "IGKV1D-39*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*03", "cdr3_length": 36, "mut_freqs": [0.003076923076923077, 0.003076923076923077, 0.006153846153846154, 0.003076923076923077, 0.006153846153846154, 0.006153846153846154, 0.003076923076923077], "n_mutations": [1, 1, 2, 1, 2, 2, 1], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAACCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTTCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGTCCCTAACGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCGCTTGGGACAGATTTCACTCTCACCATCACCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, false, true, true], "stops": [false, false, false, false, true, false, false], "paired-uids": [[], ["5cb34a1703-igh"], ["053a8abb6c-igh"], [], ["19e0f0b170-igh", "19e0f0b170-igl", "d3edbb8447-igh"], ["031d868683-igh"], ["1b28490bf6-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 294}}]}
1
+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igk", "functionalities": {}, "seqs": {"v": {"IGKV1-12*01": "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTCC", "IGKV1-27*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTATCAGCAGAAACCAGGGAAAGTTCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAATCAGGGGTCCCATCTCGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATGTTGCAACTTATTACTGTCAAAAGTATAACAGTGCCCCTCC", "IGKV1-33*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCC", "IGKV1-5*01": "GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCC", "IGKV1-8*03": "GCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCC", "IGKV1-9*01": "GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCC", "IGKV1D-13*02": "GCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGTTTAATAGTTACCCTCA", "IGKV1D-39*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCC", "IGKV2-24*01": "GATATTGTGATGACCCAGACTCCACTCTCCTCACCTGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTACACAGTGATGGAAACACCTACTTGAGTTGGCTTCAGCAGAGGCCAGGCCAGCCTCCAAGACTCCTAATTTATAAGATTTCTAACCGGTTCTCTGGGGTCCCAGACAGATTCAGTGGCAGTGGGGCAGGGACAGATTTCACACTGAAAATCAGCAGGGTGGAAGCTGAGGATGTCGGGGTTTATTACTGCATGCAAGCTACACAATTTCCTCA", "IGKV2-30*01": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC", "IGKV2D-28*01": "GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTCC", "IGKV3-11*01": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC", "IGKV3-15*01": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC", "IGKV3-20*01": "GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTCC", "IGKV4-1*02": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCCTCC", "IGKV6-21*01": "GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTACCTCA"}, "d": {"IGKDx-x*x": "A"}, "j": {"IGKJ1*01": "GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "IGKJ2*01": "TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*03": "TGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*04": "TGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ3*01": "ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "IGKJ4*01": "GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "IGKJ5*01": "GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"}}, "cyst-positions": {"IGKV1-5*01": 261, "IGKV1-9*01": 261, "IGKV3-20*01": 264, "IGKV2-24*01": 276, "IGKV1-33*01": 261, "IGKV1-12*01": 261, "IGKV2D-28*01": 276, "IGKV1-27*01": 261, "IGKV6-21*01": 261, "IGKV3-11*01": 261, "IGKV1D-39*01": 261, "IGKV1D-13*02": 261, "IGKV3-15*01": 261, "IGKV4-1*02": 279, "IGKV2-30*01": 276, "IGKV1-8*03": 261}, "phen-positions": {"IGKJ3*01": 7, "IGKJ5*01": 7, "IGKJ4*01": 7, "IGKJ2*04": 8, "IGKJ2*03": 8, "IGKJ2*01": 8, "IGKJ1*01": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 7, "n_procs": 1, "partition": [["96f6ea6b59-igk", "57810cb714-igk", "da88a0f870-igk", "962cf676f9-igk", "8abdecedf6-igk", "f9494fc130-igk"], ["816fc82f73-igk", "810f8f7056-igk", "997456da00-igk", "047be6c743-igk", "8a4877bbfc-igk", "7e90b4242e-igk", "964f9e33e6-igk", "14e4ff3a6a-igk"], ["5b83db58bc-igk"], ["dde37df0f3-igk", "ceb855766e-igk", "638b01f2ff-igk", "42584a044c-igk", "7bfd25e622-igk"], ["a1f869b08f-igk"], ["626eeaeec5-igk"], ["7713c8e94f-igk", "2e42f5c485-igk", "feeff50eb0-igk", "cb9b787bf3-igk", "2f6c99db02-igk", "6a1829447f-igk", "d7b2f887dc-igk", "99ec3a50a4-igk", "475a17c3bd-igk", "9cfd60a4c8-igk"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", ""], "reco_id": "8a9d39afe0", "tree": "[&R] ((((((f9494fc130-igk:0.009088188174857324,3659f04e0b-igk:0.009088188174857324)lot:0.00031361465909486536,96f6ea6b59-igk:0.00940180283381281)lmr:0.006829131186103249,(a59a86319d-igk:0.003937482074744522,(da88a0f870-igk:0.002403344133010928,88969bbdba-igk:0.002403344133010928)hxy:0.0015341379431273786)ijo:0.012293451945171535)ajt:0.00040387655229552806,63c1e600bb-igk:0.016634810573884128)gvw:0.0011139611276684994,(962cf676f9-igk:0.015305938845937294,(57810cb714-igk:0.014563671777919713,8abdecedf6-igk:0.014563671777919713)flx:0.000742267062721195)oux:0.00244283285603347)jwy:0.0010022049541410522)bkq:0.0;", "unique_ids": ["96f6ea6b59-igk", "57810cb714-igk", "da88a0f870-igk", "962cf676f9-igk", "8abdecedf6-igk", "f9494fc130-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.018808777429467086, 0.018808777429467086, 0.03134796238244514, 0.0219435736677116, 0.01567398119122257, 0.0219435736677116], "n_mutations": [6, 6, 10, 7, 5, 7], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCACCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGCGCCAGTCAGAGTGTTAGCAGCAACTTAGACTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCACCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAAGAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCAGTCTCTCCTGCAGGGCCAGTCAGAGTGTTACCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACCGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGCTGGACGTTCGGCCAAGGGACCAAGATGGAAATCAAAC", "GAAATAGTGATGGCGCAGTCTCCAGCCATCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAAGGCCAGTCAGAGTGTTTGCAACAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCATGGCCACTGGAATCCCAGCCAGGTTCAGTGGCAGTGCGTCTGGGACAGAGTTCACTGTCACCATCAACAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCATCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTATTAACAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCGAGCCAGGTTCAGTGGCAGTGAGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGCTGGACGTTCGGCCAAGGGACCAACGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCGGCCACCCTGTCTGTGTCTCCGGGGGAAAGAGCCAGCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGCTGGACGTTCGGCCAAGGGACTAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCACCCACCCTGTCTGTGTCTCCAGGGGAAAGACCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGTCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCACCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCCAGAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[], [], [], [], [], []], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true], "stops": [false, false, false, false, false, false], "paired-uids": [["2d29c65222-igh", "2d29c65222-igl", "96f6ea6b59-igh"], ["57810cb714-igh"], ["da88a0f870-igh"], ["962cf676f9-igh"], ["8abdecedf6-igh"], ["f9494fc130-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 288}}, {"qr_gap_seqs": ["", "", "", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", ""], "reco_id": "ca482b4daf", "tree": "[&R] ((7e90b4242e-igk:-0.0,(((14e4ff3a6a-igk:-0.0,(810f8f7056-igk:-0.0,816fc82f73-igk:-0.0)ghw:-0.0)ghn:-0.0,8a4877bbfc-igk:-0.0)ehr:-0.0,(047be6c743-igk:-0.0,(964f9e33e6-igk:-0.0,997456da00-igk:-0.0)kns:-0.0)kpv:-0.0)jux:-0.0)egh:-0.0)hmv:0.0;", "unique_ids": ["816fc82f73-igk", "810f8f7056-igk", "997456da00-igk", "047be6c743-igk", "8a4877bbfc-igk", "7e90b4242e-igk", "964f9e33e6-igk", "14e4ff3a6a-igk"], "invalid": false, "v_gene": "IGKV3-11*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "n_mutations": [0, 0, 0, 0, 0, 0, 0, 0], "input_seqs": ["GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false, false, false, false, false, false, false, false], "naive_seq": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true], "stops": [false, false, false, false, false, false, false, false], "paired-uids": [["816fc82f73-igh"], ["810f8f7056-igh", "da96f2c471-igh", "da96f2c471-igl"], ["94040b8e55-igh", "94040b8e55-igl", "997456da00-igh"], ["047be6c743-igh"], [], ["7e90b4242e-igh"], [], ["14e4ff3a6a-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 294}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "8ff5ec4520", "tree": "[&R] (5b83db58bc-igk:-0.0)alx:0.0;", "unique_ids": ["5b83db58bc-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["0e191a1e72-igh", "5b83db58bc-igh"]], "loci": ["igk"], "codon_positions": {"v": 261, "j": 288}}, {"has_shm_indels": [false, false, true, false, false], "qr_gap_seqs": ["", "", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCC...GGACCAAAGTGGATATCAAAC", "", ""], "gl_gap_seqs": ["", "", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "", ""], "indel_reversed_seqs": ["", "", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "", ""], "reco_id": "6564755f20", "tree": "[&R] ((7bfd25e622-igk:0.0015848863081747064,(((dde37df0f3-igk:0.0001364902677696193,(42584a044c-igk:1.5282355027325288e-06,ceb855766e-igk:1.5282355027325288e-06)kpq:0.00013496203224876356)egm:0.00031270976494861215,638b01f2ff-igk:0.000449200032659134)lwy:0.0008174848805471554,dc03113497-igk:0.0012666849132062894)gix:0.00031820139477142556)dku:0.0010652931279492913)mrx:0.0;", "unique_ids": ["dde37df0f3-igk", "ceb855766e-igk", "638b01f2ff-igk", "42584a044c-igk", "7bfd25e622-igk"], "invalid": false, "v_gene": "IGKV1-12*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.006211180124223602], "n_mutations": [0, 0, 0, 0, 2], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCGGACCAAAGTGGATATCAAAC", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATGACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCACCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC"], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[], [], [], [], []], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false], "in_frames": [true, true, true, true, true], "stops": [false, false, false, false, false], "paired-uids": [["88ea4d6f94-igh", "dde37df0f3-igh"], ["ceb855766e-igh"], ["638b01f2ff-igh"], ["42584a044c-igh"], ["7bfd25e622-igh", "f74e482a75-igh", "f74e482a75-igl"]], "loci": ["igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 291}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "b2144fab8e", "tree": "[&R] (a1f869b08f-igk:-0.0)aeh:0.0;", "unique_ids": ["a1f869b08f-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["02c4dcf740-igh", "02c4dcf740-igl", "a1f869b08f-igh"]], "loci": ["igk"], "codon_positions": {"v": 261, "j": 288}}, {"qr_gap_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAA..AGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "gl_gap_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "indel_reversed_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "reco_id": "182e588062", "tree": "[&R] (626eeaeec5-igk:-0.0)bwx:0.0;", "unique_ids": ["626eeaeec5-igk"], "invalid": false, "v_gene": "IGKV4-1*02", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 33, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAAAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [true], "naive_seq": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "v_3p_del": 4, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [true], "paired-uids": [["626eeaeec5-igh", "c022154f42-igh"]], "loci": ["igk"], "codon_positions": {"v": 279, "j": 309}}, {"has_shm_indels": [false, false, false, false, false, true, true, false, false, true], "qr_gap_seqs": ["", "", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCT...TCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAACGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAGCCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCGCTTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAG...ACCAAGCTGGAGATCAAAC", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGATAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "gl_gap_seqs": ["", "", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAA.GCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATC...TGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAA....GTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCA..GAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "indel_reversed_seqs": ["", "", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAGCCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "reco_id": "d217d13f25", "tree": "[&R] (((475a17c3bd-igk:0.002181809866926833,((9cfd60a4c8-igk:4.808693186930687e-05,bc72018f26-igk:4.808693186930687e-05)uvy:0.001075028096064484,((7713c8e94f-igk:0.0006432130249391569,feeff50eb0-igk:0.0006432130249391569)gpw:0.0003532399791817882,(cb9b787bf3-igk:0.0008627431930505676,((90bc43bbe6-igk:4.754190393330125e-05,9b1977f91e-igk:4.754190393330125e-05)pwz:1.8298332096787258e-05,99ec3a50a4-igk:6.584023602220886e-05)hnq:0.0007969029571662528)hlv:0.00013370981097188177)lqu:0.00012666202385224425)efv:0.0010586948390718391)gly:0.0003500741565651919,((6a1829447f-igk:0.0016565285587750195,2f6c99db02-igk:0.0016565285587750195)eoq:0.0006969621677001058,(2e42f5c485-igk:2.5136884154195087e-05,d7b2f887dc-igk:2.5136884154195087e-05)apr:0.002328353841749655)opr:0.00017839329719419227)pqv:0.00011829541245525619)cuy:0.0;", "unique_ids": ["7713c8e94f-igk", "2e42f5c485-igk", "feeff50eb0-igk", "cb9b787bf3-igk", "2f6c99db02-igk", "6a1829447f-igk", "d7b2f887dc-igk", "99ec3a50a4-igk", "475a17c3bd-igk", "9cfd60a4c8-igk"], "invalid": false, "v_gene": "IGKV1D-39*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*03", "cdr3_length": 36, "mut_freqs": [0.003076923076923077, 0.0, 0.0, 0.0, 0.006153846153846154, 0.003076923076923077, 0.0, 0.003076923076923077, 0.0, 0.0], "n_mutations": [1, 0, 0, 0, 2, 1, 0, 1, 0, 0], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCACCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAGCCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAATACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTTCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAACGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAGCCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCGCTTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCATGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGATAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[], [], [], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, false, true, true, true, true], "stops": [false, false, false, false, false, true, false, false, false, true], "paired-uids": [["7713c8e94f-igh"], ["2e42f5c485-igh"], ["feeff50eb0-igh"], ["cb9b787bf3-igh"], ["2f6c99db02-igh"], ["6a1829447f-igh"], ["d7b2f887dc-igh"], ["3de3240f4c-igh", "3de3240f4c-igl", "99ec3a50a4-igh"], ["475a17c3bd-igh", "4e6de5d38d-igh", "4e6de5d38d-igl"], ["9cfd60a4c8-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 294}}]}
test/paired/new-results/test/simu/igl.yaml CHANGED
@@ -1 +1 @@
1
- {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igl", "functionalities": {}, "seqs": {"v": {"IGLV1-40*01": "CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTC", "IGLV1-51*02": "CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATCTATGAAAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGG", "IGLV2-14*04": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTC", "IGLV2-23*02": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTC", "IGLV3-1*01": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCA", "IGLV3-19*01": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT", "IGLV3-27*01": "TCCTATGAGCTGACACAGCCATCCTCAGTGTCAGTGTCTCCGGGACAGACAGCCAGGATCACCTGCTCAGGAGATGTACTGGCAAAAAAATATGCTCGGTGGTTCCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATTTATAAAGACAGTGAGCGGCCCTCAGGGATCCCTGAGCGATTCTCCGGCTCCAGCTCAGGGACCACAGTCACCTTGACCATCAGCGGGGCCCAGGTTGAGGATGAGGCTGACTATTACTGTTACTCTGCGGCTGACAACAATCT", "IGLV4-60*03": "CAGCCTGTGCTGACTCAATCATCCTCTGCCTCTGCTTCCCTGGGATCCTCGGTCAAGCTCACCTGCACTCTGAGCAGTGGGCACAGTAGCTACATCATCGCATGGCATCAGCAGCAGCCAGGGAAGGCCCCTCGGTACTTGATGAAGCTTGAAGGTAGTGGAAGCTACAACAAGGGGAGCGGAGTTCCTGATCGCTTCTCAGGCTCCAGCTCTGGGGCTGACCGCTACCTCACCATCTCCAACCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGAGACCTGGGACAGTAACACTCA", "IGLV7-46*04": "CAGGCTGTGGTGACTCAGGAGCCCTCACTGACTGTGTCCCCAGGAGGGACAGTCACTCTCACCTGTGGCTCCAGCACTGGAGCTGTCACCAGTGGTCATTATCCCTACTGGTTCCAGCAGAAGCCTGGCCAAGCCCCCAGGACACTGATTTATGATACAAGCAACAAACACTCCTGGACCCCTGCCCGGTTCTCAGGCTCCCTCCTTGGGGGCAAAGCTGCCCTGACCCTTTCGGGTGCGCAGCCTGAGGATGAGGCTGAGTATTACTGCTTGCTCTCCTATAGTGGTGCTCGG", "IGLV8-61*01": "CAGACTGTGGTGACCCAGGAGCCATCGTTCTCAGTGTCCCCTGGAGGGACAGTCACACTCACTTGTGGCTTGAGCTCTGGCTCAGTCTCTACTAGTTACTACCCCAGCTGGTACCAGCAGACCCCAGGCCAGGCTCCACGCACGCTCATCTACAGCACAAACACTCGCTCTTCTGGGGTCCCTGATCGCTTCTCTGGCTCCATCCTTGGGAACAAAGCTGCCCTCACCATCACGGGGGCCCAGGCAGATGATGAATCTGATTATTACTGTGTGCTGTATATGGGTAGTGGCATTTC"}, "d": {"IGLDx-x*x": "A"}, "j": {"IGLJ1*01": "TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG", "IGLJ2*01": "TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "IGLJ3*02": "TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"}}, "cyst-positions": {"IGLV8-61*01": 267, "IGLV2-14*04": 267, "IGLV4-60*03": 273, "IGLV2-23*02": 267, "IGLV1-40*01": 267, "IGLV3-1*01": 258, "IGLV1-51*02": 264, "IGLV7-46*04": 267, "IGLV3-27*01": 258, "IGLV3-19*01": 258}, "phen-positions": {"IGLJ1*01": 7, "IGLJ2*01": 7, "IGLJ3*02": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 3, "n_procs": 1, "partition": [["b68b8d0fe2-igl", "de762b8ce4-igl", "552c9f1e08-igl", "c8a03324cc-igl", "d068457847-igl", "0bfaf8b4b1-igl", "8c03b80be0-igl", "f4ebbe68a7-igl", "d8138c32a6-igl", "922ea4413e-igl", "a55e058517-igl", "383777b7c5-igl"], ["898ab41392-igl", "5d404a8547-igl", "fd0c4f0f17-igl"], ["a9c9c3afba-igl", "1bd9242383-igl", "45de550151-igl", "652adbce26-igl", "504e3941e6-igl", "19e0f0b170-igl"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false, false, true, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCC........AAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAGCTCAGAAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "reco_id": "e707c96016", "tree": "[&R] (((((3a41497d91-igl:0.007385162951159356,d068457847-igl:0.007385162951159356)bkm:0.005605303670959556,45eb339259-igl:0.0129904666254787)iqr:0.002648926846099352,(552c9f1e08-igl:0.01466725887272979,de762b8ce4-igl:0.01466725887272979)gis:0.0009721345962724225)ahz:0.004634256160450372,((c8a03324cc-igl:0.0025550433855388802,922ea4413e-igl:0.0025550433855388802)mos:0.016905476324571775,((8c03b80be0-igl:0.011287736113761764,((f4ebbe68a7-igl:0.0015841087168501067,383777b7c5-igl:0.0015841087168501067)fnr:0.0002666556744881951,((0bfaf8b4b1-igl:0.0014312958996758355,a55e058517-igl:0.0014312958996758355)hkt:0.0003340799418143904,d8138c32a6-igl:0.001765375841378233)beo:8.538855010565957e-05)adh:0.009436971722983427)efn:0.00737350252108383,b68b8d0fe2-igl:0.01866123863932531)clt:0.0007992810697774085)ags:0.0008131299216937824)buv:0.009406482169521176)alp:0.0;", "unique_ids": ["b68b8d0fe2-igl", "de762b8ce4-igl", "552c9f1e08-igl", "c8a03324cc-igl", "d068457847-igl", "0bfaf8b4b1-igl", "8c03b80be0-igl", "f4ebbe68a7-igl", "d8138c32a6-igl", "922ea4413e-igl", "a55e058517-igl", "383777b7c5-igl"], "invalid": false, "v_gene": "IGLV3-19*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 39, "mut_freqs": [0.04, 0.021538461538461538, 0.04, 0.04, 0.03076923076923077, 0.021538461538461538, 0.03076923076923077, 0.018461538461538463, 0.021538461538461538, 0.036923076923076927, 0.018461538461538463, 0.018461538461538463], "n_mutations": [13, 7, 13, 13, 10, 7, 10, 6, 7, 12, 6, 6], "input_seqs": ["TCTTCTGAGCTGACTCAGGACCCTGCTCTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAAAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTTCCAGCAGAAGCCAGGACAGGCTCCTGTACTTGTCATCTATGGTAAAAGCAACCGGCCCTCAGTGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGCGGCTCAGGCGAAACATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCTAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCGTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCAATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTCTTACTGTAACTCCCGGGACAGCAGTGGTAACGATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGCGTCTGTGGCCTTGGGACAGATAGTCAGGATCGCATGCCAAGAAGACAGCCTCAGAAGCTATTATCCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTCGGGCTCAGGCAGAAGATGAGGCTGCCTCTTACTGTAACTCCCGGGACAACAGTGATAACGATGTGGTATTCGTCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCGGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAGCTCAGAAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCATGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGAAAGGCCCCTGTACTTGTCATCTATGGTAAAAACTATCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTAACCATCACTGGGGCTGAGGCGGAAGATGAGGCTGACTCTTACTGTAACTCCCGGGACAGCAGTGGTAACGATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAACAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTTACTCAGGACCCTGCTGTGTCTGTGGCCTTAGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAATCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGCTAAGCATCTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTTCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true, true, false, true, true], "stops": [false, true, false, false, false, false, false, false, false, true, false, false], "paired-uids": [["b68b8d0fe2-igh"], ["de762b8ce4-igh", "ebb52c305d-igh"], ["552c9f1e08-igh"], ["898ab41392-igh", "898ab41392-igl", "c8a03324cc-igh"], ["d068457847-igh"], ["0bfaf8b4b1-igh"], ["8c03b80be0-igh"], ["f4ebbe68a7-igh"], ["652adbce26-igh", "652adbce26-igl"], ["922ea4413e-igh"], ["a55e058517-igh"], ["383777b7c5-igh"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 294}}, {"qr_gap_seqs": ["", "CAGTCTGCCCTGCTAACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "gl_gap_seqs": ["", "CAGTCTGCCCTG...ACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "indel_reversed_seqs": ["", "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "reco_id": "dd76478982", "tree": "[&R] (((fd0c4f0f17-igl:-0.0,5d404a8547-igl:-0.0)bqw:-0.0,898ab41392-igl:-0.0)fpy:-0.0)cgn:0.0;", "unique_ids": ["898ab41392-igl", "5d404a8547-igl", "fd0c4f0f17-igl"], "invalid": false, "v_gene": "IGLV2-14*04", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ3*02", "cdr3_length": 39, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "CAGTCTGCCCTGCTAACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "has_shm_indels": [false, true, false], "naive_seq": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], []], "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["898ab41392-igh", "c8a03324cc-igh", "c8a03324cc-igl"], ["25beda54e8-igh", "25beda54e8-igk", "5d404a8547-igh"], ["a32678cdd4-igh", "a32678cdd4-igk", "fd0c4f0f17-igh"]], "loci": ["igl", "igl", "igl"], "codon_positions": {"v": 267, "j": 303}}, {"has_shm_indels": [false, false, true, false, false, false], "qr_gap_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGC.GGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGG.....CCAAGCTGACCGTCCTAG", "", "", ""], "gl_gap_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", "", ""], "indel_reversed_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", "", ""], "reco_id": "da8c9d16ae", "tree": "[&R] (((((fa02aeb02e-igl:-0.0,a9c9c3afba-igl:-0.0)efs:-0.0,(((652adbce26-igl:-0.0,45de550151-igl:-0.0)giy:-0.0,1bd9242383-igl:-0.0)axy:-0.0,(11f41b5f10-igl:-0.0,6d2eb72d4b-igl:-0.0)cfj:-0.0)hns:-0.0)hjv:-0.0,(19e0f0b170-igl:-0.0,504e3941e6-igl:-0.0)emn:-0.0)iwz:-0.0,ebb52c305d-igl:-0.0)eju:-0.0)bgr:0.0;", "unique_ids": ["a9c9c3afba-igl", "1bd9242383-igl", "45de550151-igl", "652adbce26-igl", "504e3941e6-igl", "19e0f0b170-igl"], "invalid": false, "v_gene": "IGLV3-1*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "n_mutations": [0, 0, 0, 0, 0, 0], "input_seqs": ["TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGCCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], []], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, false, true, true, true], "stops": [false, false, true, false, false, false], "paired-uids": [[], ["69e29aff11-igh", "69e29aff11-igk"], ["7fc27267b4-igh", "7fc27267b4-igk"], ["652adbce26-igh", "d8138c32a6-igl"], ["504e3941e6-igh", "5b83db58bc-igh", "5b83db58bc-igk"], ["19e0f0b170-igh", "d3edbb8447-igh", "d3edbb8447-igk"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 288}}]}
1
+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igl", "functionalities": {}, "seqs": {"v": {"IGLV1-40*01": "CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTC", "IGLV1-51*02": "CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATCTATGAAAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGG", "IGLV2-14*04": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTC", "IGLV2-23*02": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTC", "IGLV3-1*01": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCA", "IGLV3-19*01": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT", "IGLV3-27*01": "TCCTATGAGCTGACACAGCCATCCTCAGTGTCAGTGTCTCCGGGACAGACAGCCAGGATCACCTGCTCAGGAGATGTACTGGCAAAAAAATATGCTCGGTGGTTCCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATTTATAAAGACAGTGAGCGGCCCTCAGGGATCCCTGAGCGATTCTCCGGCTCCAGCTCAGGGACCACAGTCACCTTGACCATCAGCGGGGCCCAGGTTGAGGATGAGGCTGACTATTACTGTTACTCTGCGGCTGACAACAATCT", "IGLV4-60*03": "CAGCCTGTGCTGACTCAATCATCCTCTGCCTCTGCTTCCCTGGGATCCTCGGTCAAGCTCACCTGCACTCTGAGCAGTGGGCACAGTAGCTACATCATCGCATGGCATCAGCAGCAGCCAGGGAAGGCCCCTCGGTACTTGATGAAGCTTGAAGGTAGTGGAAGCTACAACAAGGGGAGCGGAGTTCCTGATCGCTTCTCAGGCTCCAGCTCTGGGGCTGACCGCTACCTCACCATCTCCAACCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGAGACCTGGGACAGTAACACTCA", "IGLV7-46*04": "CAGGCTGTGGTGACTCAGGAGCCCTCACTGACTGTGTCCCCAGGAGGGACAGTCACTCTCACCTGTGGCTCCAGCACTGGAGCTGTCACCAGTGGTCATTATCCCTACTGGTTCCAGCAGAAGCCTGGCCAAGCCCCCAGGACACTGATTTATGATACAAGCAACAAACACTCCTGGACCCCTGCCCGGTTCTCAGGCTCCCTCCTTGGGGGCAAAGCTGCCCTGACCCTTTCGGGTGCGCAGCCTGAGGATGAGGCTGAGTATTACTGCTTGCTCTCCTATAGTGGTGCTCGG", "IGLV8-61*01": "CAGACTGTGGTGACCCAGGAGCCATCGTTCTCAGTGTCCCCTGGAGGGACAGTCACACTCACTTGTGGCTTGAGCTCTGGCTCAGTCTCTACTAGTTACTACCCCAGCTGGTACCAGCAGACCCCAGGCCAGGCTCCACGCACGCTCATCTACAGCACAAACACTCGCTCTTCTGGGGTCCCTGATCGCTTCTCTGGCTCCATCCTTGGGAACAAAGCTGCCCTCACCATCACGGGGGCCCAGGCAGATGATGAATCTGATTATTACTGTGTGCTGTATATGGGTAGTGGCATTTC"}, "d": {"IGLDx-x*x": "A"}, "j": {"IGLJ1*01": "TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG", "IGLJ2*01": "TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "IGLJ3*02": "TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"}}, "cyst-positions": {"IGLV8-61*01": 267, "IGLV2-14*04": 267, "IGLV4-60*03": 273, "IGLV2-23*02": 267, "IGLV1-40*01": 267, "IGLV3-1*01": 258, "IGLV1-51*02": 264, "IGLV7-46*04": 267, "IGLV3-27*01": 258, "IGLV3-19*01": 258}, "phen-positions": {"IGLJ1*01": 7, "IGLJ2*01": 7, "IGLJ3*02": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 3, "n_procs": 1, "partition": [["83cd33d783-igl", "24174ebdc9-igl", "da96f2c471-igl", "2d29c65222-igl", "8828e95dd5-igl", "f74e482a75-igl", "02c4dcf740-igl", "4e6de5d38d-igl"], ["3de3240f4c-igl"], ["94040b8e55-igl"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", ""], "reco_id": "e707c96016", "tree": "[&R] ((((((4e6de5d38d-igl:0.014385310579532198,c022154f42-igl:0.014385310579532198)gis:0.0004964074451995572,da96f2c471-igl:0.014881718024511137)bkm:0.010809544345950627,(83cd33d783-igl:0.006232474664558756,(8828e95dd5-igl:0.0038041522818052244,f74e482a75-igl:0.0038041522818052244)mos:0.002428322384959696)ags:0.019458787705903004)iqr:0.0006392791972150224,24174ebdc9-igl:0.026330541570324183)ahz:0.0017632421871908318,(0e191a1e72-igl:0.024227126438608457,(2d29c65222-igl:0.02305222313544712,02c4dcf740-igl:0.02305222313544712)efn:0.0011749032947779086)clt:0.003866657319568409)buv:0.001586348043447196)alp:0.0;", "unique_ids": ["83cd33d783-igl", "24174ebdc9-igl", "da96f2c471-igl", "2d29c65222-igl", "8828e95dd5-igl", "f74e482a75-igl", "02c4dcf740-igl", "4e6de5d38d-igl"], "invalid": false, "v_gene": "IGLV3-19*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 39, "mut_freqs": [0.033846153846153845, 0.033846153846153845, 0.027692307692307693, 0.027692307692307693, 0.036923076923076927, 0.043076923076923075, 0.052307692307692305, 0.046153846153846156], "n_mutations": [11, 11, 9, 9, 12, 14, 17, 15], "input_seqs": ["TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGCCCTCAGGGCTCCCAGACCGATTCTCTGGCTCCAGCTCAGAAAACATAGCTTCCTTGACCATCACTGGGGCTCACGCGGAGGATGACGCTGACAATTACTGTAACTCCCGGCACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCCGTGACTGTCGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTATTAGCAGAAGGCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACGACTGGCCCTCAGTGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGCAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACACACAGTCAGGATCACATGCCAAGGAGACTGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAACCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGGCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGAGGCTCAGGCGGAAGATGAGGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGGCCGTCCTCG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACACCCTCAGAGGCTTTTATGCAAGCTGGTACGAGCAGAAGCCAGGACAGCCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGGCCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTCACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGCCCTCAGGGTTCCCAGACCGATTCTCTGGCTCCAGCTCAGAAAACATAGCTTTCCTGACCATCACTGGGGCTCAGGCGGAGGATGACGCTGACAATTACTGTAACTCCCGGCACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACAGCCTCAGAAGCTATTGTGCAAGCTGGTACCAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGCCCTCAGGGTTCCCAGACCGATTCTCTGGCTCCAGCTCAGAAAACATAGCTTCCCTGACCATCACTGGGGCTCAGGCGGAGGATCACGCTGACAATTACTGTAACTCCCGGCACAGCAGTGGTAACCATGTGGTATTCGGCGCAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGCGACAGACAGTCAGGACCACATGTCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACGAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCGGAGCGATTCTCTGCGTCCAGCTCAGGAAAGACAGCTTCCTCGACCATCACTGGGGCTCAGGCGGAAGATGACGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGACAGACCAAGCTCACCGTCCTGG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACACACAGTCAGAATCACACGCCAAGGAGACTGCCTCAGGAGCTATTATGCAAGCTGGTACCAGCAGAAGTCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGGCCTCAGGGGTCCCAGACCGATTCTTTGGCTCCAGCTCAGGAAACACCCCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGACTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGGCCGTCCTAG"], "naive_seq": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true], "stops": [false, true, false, false, false, false, false, false], "paired-uids": [["83cd33d783-igh"], ["24174ebdc9-igh", "8828e95dd5-igl"], ["810f8f7056-igh", "810f8f7056-igk", "da96f2c471-igh"], ["2d29c65222-igh", "96f6ea6b59-igh", "96f6ea6b59-igk"], ["24174ebdc9-igh", "24174ebdc9-igl"], ["7bfd25e622-igh", "7bfd25e622-igk", "f74e482a75-igh"], ["02c4dcf740-igh", "a1f869b08f-igh", "a1f869b08f-igk"], ["475a17c3bd-igh", "475a17c3bd-igk", "4e6de5d38d-igh"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 294}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "dd76478982", "tree": "[&R] ((88ea4d6f94-igl:-0.0,3de3240f4c-igl:-0.0)fpy:-0.0)cgn:0.0;", "unique_ids": ["3de3240f4c-igl"], "invalid": false, "v_gene": "IGLV2-14*04", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ3*02", "cdr3_length": 39, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[]], "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["3de3240f4c-igh", "99ec3a50a4-igh", "99ec3a50a4-igk"]], "loci": ["igl"], "codon_positions": {"v": 267, "j": 303}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "da8c9d16ae", "tree": "[&R] (94040b8e55-igl:-0.0)bgr:0.0;", "unique_ids": ["94040b8e55-igl"], "invalid": false, "v_gene": "IGLV3-1*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 33, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "has_shm_indels": [false], "naive_seq": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[]], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["94040b8e55-igh", "997456da00-igh", "997456da00-igk"]], "loci": ["igl"], "codon_positions": {"v": 258, "j": 288}}]}
test/paired/new-results/test/simu/meta.yaml CHANGED
@@ -1 +1 @@
1
- {"6728f9fb1f-igh": {"locus": "igh", "paired-uids": ["6728f9fb1f-igk"]}, "25beda54e8-igh": {"locus": "igh", "paired-uids": ["25beda54e8-igk", "5d404a8547-igh", "5d404a8547-igl"]}, "a385b6b9c0-igh": {"locus": "igh", "paired-uids": ["a385b6b9c0-igk"]}, "293677779b-igh": {"locus": "igh", "paired-uids": ["293677779b-igk"]}, "539dc7162b-igh": {"locus": "igh", "paired-uids": ["11f41b5f10-igh", "539dc7162b-igk"]}, "7fc27267b4-igh": {"locus": "igh", "paired-uids": ["45de550151-igl", "7fc27267b4-igk"]}, "c074eb0544-igh": {"locus": "igh", "paired-uids": ["6d2eb72d4b-igh", "c074eb0544-igk"]}, "5414307e18-igh": {"locus": "igh", "paired-uids": ["5414307e18-igk"]}, "1dc717a47d-igh": {"locus": "igh", "paired-uids": ["1dc717a47d-igk"]}, "fa79e38212-igh": {"locus": "igh", "paired-uids": ["fa79e38212-igk"]}, "3590a73b2b-igh": {"locus": "igh", "paired-uids": ["3590a73b2b-igk"]}, "486333046a-igh": {"locus": "igh", "paired-uids": ["486333046a-igk"]}, "1bb77dbdd8-igh": {"locus": "igh", "paired-uids": []}, "5b83db58bc-igh": {"locus": "igh", "paired-uids": ["504e3941e6-igh", "504e3941e6-igl", "5b83db58bc-igk"]}, "8c82b5df7c-igh": {"locus": "igh", "paired-uids": ["8c82b5df7c-igk"]}, "dde37df0f3-igh": {"locus": "igh", "paired-uids": ["dde37df0f3-igk"]}, "4e698cd55b-igh": {"locus": "igh", "paired-uids": ["4e698cd55b-igk"]}, "6daaa9b771-igh": {"locus": "igh", "paired-uids": ["3a41497d91-igh"]}, "a32678cdd4-igh": {"locus": "igh", "paired-uids": ["a32678cdd4-igk", "fd0c4f0f17-igh", "fd0c4f0f17-igl"]}, "4879a2a0d7-igh": {"locus": "igh", "paired-uids": ["4879a2a0d7-igk"]}, "7777388536-igh": {"locus": "igh", "paired-uids": ["7777388536-igk"]}, "69e29aff11-igh": {"locus": "igh", "paired-uids": ["1bd9242383-igl", "69e29aff11-igk"]}, "c449e7d496-igh": {"locus": "igh", "paired-uids": ["c449e7d496-igk"]}, "b8dd0bbe5b-igh": {"locus": "igh", "paired-uids": ["b8dd0bbe5b-igk"]}, "831950bd07-igh": {"locus": "igh", "paired-uids": ["831950bd07-igk"]}, "1df0b0d259-igh": {"locus": "igh", "paired-uids": ["1df0b0d259-igk"]}, "2bbe5f9b28-igh": {"locus": "igh", "paired-uids": ["2bbe5f9b28-igk"]}, "9f7c316b7a-igh": {"locus": "igh", "paired-uids": ["9f7c316b7a-igk"]}, "f5dedfcd67-igh": {"locus": "igh", "paired-uids": []}, "5cb34a1703-igh": {"locus": "igh", "paired-uids": ["5cb34a1703-igk"]}, "053a8abb6c-igh": {"locus": "igh", "paired-uids": ["053a8abb6c-igk"]}, "d3edbb8447-igh": {"locus": "igh", "paired-uids": ["19e0f0b170-igh", "19e0f0b170-igl", "d3edbb8447-igk"]}, "031d868683-igh": {"locus": "igh", "paired-uids": ["031d868683-igk"]}, "1b28490bf6-igh": {"locus": "igh", "paired-uids": ["1b28490bf6-igk"]}, "b68b8d0fe2-igh": {"locus": "igh", "paired-uids": ["b68b8d0fe2-igl"]}, "de762b8ce4-igh": {"locus": "igh", "paired-uids": ["de762b8ce4-igl", "ebb52c305d-igh"]}, "552c9f1e08-igh": {"locus": "igh", "paired-uids": ["552c9f1e08-igl"]}, "c8a03324cc-igh": {"locus": "igh", "paired-uids": ["898ab41392-igh", "898ab41392-igl", "c8a03324cc-igl"]}, "d068457847-igh": {"locus": "igh", "paired-uids": ["d068457847-igl"]}, "0bfaf8b4b1-igh": {"locus": "igh", "paired-uids": ["0bfaf8b4b1-igl"]}, "8c03b80be0-igh": {"locus": "igh", "paired-uids": ["8c03b80be0-igl"]}, "f4ebbe68a7-igh": {"locus": "igh", "paired-uids": ["f4ebbe68a7-igl"]}, "922ea4413e-igh": {"locus": "igh", "paired-uids": ["922ea4413e-igl"]}, "a55e058517-igh": {"locus": "igh", "paired-uids": ["a55e058517-igl"]}, "383777b7c5-igh": {"locus": "igh", "paired-uids": ["383777b7c5-igl"]}, "3a41497d91-igh": {"locus": "igh", "paired-uids": ["6daaa9b771-igh"]}, "898ab41392-igh": {"locus": "igh", "paired-uids": ["898ab41392-igl", "c8a03324cc-igh", "c8a03324cc-igl"]}, "5d404a8547-igh": {"locus": "igh", "paired-uids": ["25beda54e8-igh", "25beda54e8-igk", "5d404a8547-igl"]}, "fd0c4f0f17-igh": {"locus": "igh", "paired-uids": ["a32678cdd4-igh", "a32678cdd4-igk", "fd0c4f0f17-igl"]}, "ebb52c305d-igh": {"locus": "igh", "paired-uids": ["de762b8ce4-igh", "de762b8ce4-igl"]}, "652adbce26-igh": {"locus": "igh", "paired-uids": ["652adbce26-igl", "d8138c32a6-igl"]}, "6d2eb72d4b-igh": {"locus": "igh", "paired-uids": ["c074eb0544-igh", "c074eb0544-igk"]}, "11f41b5f10-igh": {"locus": "igh", "paired-uids": ["539dc7162b-igh", "539dc7162b-igk"]}, "504e3941e6-igh": {"locus": "igh", "paired-uids": ["504e3941e6-igl", "5b83db58bc-igh", "5b83db58bc-igk"]}, "19e0f0b170-igh": {"locus": "igh", "paired-uids": ["19e0f0b170-igl", "d3edbb8447-igh", "d3edbb8447-igk"]}, "fa02aeb02e-igh": {"locus": "igh", "paired-uids": ["70cc01a590-igk"]}, "6728f9fb1f-igk": {"locus": "igk", "paired-uids": ["6728f9fb1f-igh"]}, "84b9b0a5db-igk": {"locus": "igk", "paired-uids": []}, "25beda54e8-igk": {"locus": "igk", "paired-uids": ["25beda54e8-igh", "5d404a8547-igh", "5d404a8547-igl"]}, "a385b6b9c0-igk": {"locus": "igk", "paired-uids": ["a385b6b9c0-igh"]}, "762f4ed65b-igk": {"locus": "igk", "paired-uids": []}, "293677779b-igk": {"locus": "igk", "paired-uids": ["293677779b-igh"]}, "539dc7162b-igk": {"locus": "igk", "paired-uids": ["11f41b5f10-igh", "539dc7162b-igh"]}, "7fc27267b4-igk": {"locus": "igk", "paired-uids": ["45de550151-igl", "7fc27267b4-igh"]}, "c074eb0544-igk": {"locus": "igk", "paired-uids": ["6d2eb72d4b-igh", "c074eb0544-igh"]}, "5414307e18-igk": {"locus": "igk", "paired-uids": ["5414307e18-igh"]}, "1dc717a47d-igk": {"locus": "igk", "paired-uids": ["1dc717a47d-igh"]}, "fa79e38212-igk": {"locus": "igk", "paired-uids": ["fa79e38212-igh"]}, "3590a73b2b-igk": {"locus": "igk", "paired-uids": ["3590a73b2b-igh"]}, "486333046a-igk": {"locus": "igk", "paired-uids": ["486333046a-igh"]}, "5b83db58bc-igk": {"locus": "igk", "paired-uids": ["504e3941e6-igh", "504e3941e6-igl", "5b83db58bc-igh"]}, "70cc01a590-igk": {"locus": "igk", "paired-uids": ["fa02aeb02e-igh"]}, "8c82b5df7c-igk": {"locus": "igk", "paired-uids": ["8c82b5df7c-igh"]}, "dde37df0f3-igk": {"locus": "igk", "paired-uids": ["dde37df0f3-igh"]}, "4e698cd55b-igk": {"locus": "igk", "paired-uids": ["4e698cd55b-igh"]}, "a32678cdd4-igk": {"locus": "igk", "paired-uids": ["a32678cdd4-igh", "fd0c4f0f17-igh", "fd0c4f0f17-igl"]}, "4879a2a0d7-igk": {"locus": "igk", "paired-uids": ["4879a2a0d7-igh"]}, "7777388536-igk": {"locus": "igk", "paired-uids": ["7777388536-igh"]}, "69e29aff11-igk": {"locus": "igk", "paired-uids": ["1bd9242383-igl", "69e29aff11-igh"]}, "c449e7d496-igk": {"locus": "igk", "paired-uids": ["c449e7d496-igh"]}, "b8dd0bbe5b-igk": {"locus": "igk", "paired-uids": ["b8dd0bbe5b-igh"]}, "831950bd07-igk": {"locus": "igk", "paired-uids": ["831950bd07-igh"]}, "1df0b0d259-igk": {"locus": "igk", "paired-uids": ["1df0b0d259-igh"]}, "2bbe5f9b28-igk": {"locus": "igk", "paired-uids": ["2bbe5f9b28-igh"]}, "9f7c316b7a-igk": {"locus": "igk", "paired-uids": ["9f7c316b7a-igh"]}, "2b1422c0aa-igk": {"locus": "igk", "paired-uids": []}, "5cb34a1703-igk": {"locus": "igk", "paired-uids": ["5cb34a1703-igh"]}, "053a8abb6c-igk": {"locus": "igk", "paired-uids": ["053a8abb6c-igh"]}, "39fc72ec75-igk": {"locus": "igk", "paired-uids": []}, "d3edbb8447-igk": {"locus": "igk", "paired-uids": ["19e0f0b170-igh", "19e0f0b170-igl", "d3edbb8447-igh"]}, "031d868683-igk": {"locus": "igk", "paired-uids": ["031d868683-igh"]}, "1b28490bf6-igk": {"locus": "igk", "paired-uids": ["1b28490bf6-igh"]}, "b68b8d0fe2-igl": {"locus": "igl", "paired-uids": ["b68b8d0fe2-igh"]}, "de762b8ce4-igl": {"locus": "igl", "paired-uids": ["de762b8ce4-igh", "ebb52c305d-igh"]}, "552c9f1e08-igl": {"locus": "igl", "paired-uids": ["552c9f1e08-igh"]}, "c8a03324cc-igl": {"locus": "igl", "paired-uids": ["898ab41392-igh", "898ab41392-igl", "c8a03324cc-igh"]}, "d068457847-igl": {"locus": "igl", "paired-uids": ["d068457847-igh"]}, "0bfaf8b4b1-igl": {"locus": "igl", "paired-uids": ["0bfaf8b4b1-igh"]}, "8c03b80be0-igl": {"locus": "igl", "paired-uids": ["8c03b80be0-igh"]}, "f4ebbe68a7-igl": {"locus": "igl", "paired-uids": ["f4ebbe68a7-igh"]}, "d8138c32a6-igl": {"locus": "igl", "paired-uids": ["652adbce26-igh", "652adbce26-igl"]}, "922ea4413e-igl": {"locus": "igl", "paired-uids": ["922ea4413e-igh"]}, "a55e058517-igl": {"locus": "igl", "paired-uids": ["a55e058517-igh"]}, "383777b7c5-igl": {"locus": "igl", "paired-uids": ["383777b7c5-igh"]}, "898ab41392-igl": {"locus": "igl", "paired-uids": ["898ab41392-igh", "c8a03324cc-igh", "c8a03324cc-igl"]}, "5d404a8547-igl": {"locus": "igl", "paired-uids": ["25beda54e8-igh", "25beda54e8-igk", "5d404a8547-igh"]}, "fd0c4f0f17-igl": {"locus": "igl", "paired-uids": ["a32678cdd4-igh", "a32678cdd4-igk", "fd0c4f0f17-igh"]}, "a9c9c3afba-igl": {"locus": "igl", "paired-uids": []}, "1bd9242383-igl": {"locus": "igl", "paired-uids": ["69e29aff11-igh", "69e29aff11-igk"]}, "45de550151-igl": {"locus": "igl", "paired-uids": ["7fc27267b4-igh", "7fc27267b4-igk"]}, "652adbce26-igl": {"locus": "igl", "paired-uids": ["652adbce26-igh", "d8138c32a6-igl"]}, "504e3941e6-igl": {"locus": "igl", "paired-uids": ["504e3941e6-igh", "5b83db58bc-igh", "5b83db58bc-igk"]}, "19e0f0b170-igl": {"locus": "igl", "paired-uids": ["19e0f0b170-igh", "d3edbb8447-igh", "d3edbb8447-igk"]}}
1
+ {"a59a86319d-igh": {"locus": "igh", "paired-uids": []}, "63c1e600bb-igh": {"locus": "igh", "paired-uids": []}, "96f6ea6b59-igh": {"locus": "igh", "paired-uids": ["2d29c65222-igh", "2d29c65222-igl", "96f6ea6b59-igk"]}, "57810cb714-igh": {"locus": "igh", "paired-uids": ["57810cb714-igk"]}, "da88a0f870-igh": {"locus": "igh", "paired-uids": ["da88a0f870-igk"]}, "3659f04e0b-igh": {"locus": "igh", "paired-uids": []}, "962cf676f9-igh": {"locus": "igh", "paired-uids": ["962cf676f9-igk"]}, "8abdecedf6-igh": {"locus": "igh", "paired-uids": ["8abdecedf6-igk"]}, "f9494fc130-igh": {"locus": "igh", "paired-uids": ["f9494fc130-igk"]}, "816fc82f73-igh": {"locus": "igh", "paired-uids": ["816fc82f73-igk"]}, "810f8f7056-igh": {"locus": "igh", "paired-uids": ["810f8f7056-igk", "da96f2c471-igh", "da96f2c471-igl"]}, "997456da00-igh": {"locus": "igh", "paired-uids": ["94040b8e55-igh", "94040b8e55-igl", "997456da00-igk"]}, "047be6c743-igh": {"locus": "igh", "paired-uids": ["047be6c743-igk"]}, "7e90b4242e-igh": {"locus": "igh", "paired-uids": ["7e90b4242e-igk"]}, "14e4ff3a6a-igh": {"locus": "igh", "paired-uids": ["14e4ff3a6a-igk"]}, "5b83db58bc-igh": {"locus": "igh", "paired-uids": ["0e191a1e72-igh", "5b83db58bc-igk"]}, "dde37df0f3-igh": {"locus": "igh", "paired-uids": ["88ea4d6f94-igh", "dde37df0f3-igk"]}, "ceb855766e-igh": {"locus": "igh", "paired-uids": ["ceb855766e-igk"]}, "638b01f2ff-igh": {"locus": "igh", "paired-uids": ["638b01f2ff-igk"]}, "dc03113497-igh": {"locus": "igh", "paired-uids": []}, "42584a044c-igh": {"locus": "igh", "paired-uids": ["42584a044c-igk"]}, "7bfd25e622-igh": {"locus": "igh", "paired-uids": ["7bfd25e622-igk", "f74e482a75-igh", "f74e482a75-igl"]}, "a1f869b08f-igh": {"locus": "igh", "paired-uids": ["02c4dcf740-igh", "02c4dcf740-igl", "a1f869b08f-igk"]}, "626eeaeec5-igh": {"locus": "igh", "paired-uids": ["626eeaeec5-igk", "c022154f42-igh"]}, "7713c8e94f-igh": {"locus": "igh", "paired-uids": ["7713c8e94f-igk"]}, "2e42f5c485-igh": {"locus": "igh", "paired-uids": ["2e42f5c485-igk"]}, "feeff50eb0-igh": {"locus": "igh", "paired-uids": ["feeff50eb0-igk"]}, "cb9b787bf3-igh": {"locus": "igh", "paired-uids": ["cb9b787bf3-igk"]}, "2f6c99db02-igh": {"locus": "igh", "paired-uids": ["2f6c99db02-igk"]}, "6a1829447f-igh": {"locus": "igh", "paired-uids": ["6a1829447f-igk"]}, "d7b2f887dc-igh": {"locus": "igh", "paired-uids": ["d7b2f887dc-igk"]}, "99ec3a50a4-igh": {"locus": "igh", "paired-uids": ["3de3240f4c-igh", "3de3240f4c-igl", "99ec3a50a4-igk"]}, "9b1977f91e-igh": {"locus": "igh", "paired-uids": []}, "475a17c3bd-igh": {"locus": "igh", "paired-uids": ["475a17c3bd-igk", "4e6de5d38d-igh", "4e6de5d38d-igl"]}, "bc72018f26-igh": {"locus": "igh", "paired-uids": []}, "9cfd60a4c8-igh": {"locus": "igh", "paired-uids": ["9cfd60a4c8-igk"]}, "90bc43bbe6-igh": {"locus": "igh", "paired-uids": []}, "83cd33d783-igh": {"locus": "igh", "paired-uids": ["83cd33d783-igl"]}, "24174ebdc9-igh": {"locus": "igh", "paired-uids": ["24174ebdc9-igl", "8828e95dd5-igl"]}, "da96f2c471-igh": {"locus": "igh", "paired-uids": ["810f8f7056-igh", "810f8f7056-igk", "da96f2c471-igl"]}, "2d29c65222-igh": {"locus": "igh", "paired-uids": ["2d29c65222-igl", "96f6ea6b59-igh", "96f6ea6b59-igk"]}, "f74e482a75-igh": {"locus": "igh", "paired-uids": ["7bfd25e622-igh", "7bfd25e622-igk", "f74e482a75-igl"]}, "c022154f42-igh": {"locus": "igh", "paired-uids": ["626eeaeec5-igh", "626eeaeec5-igk"]}, "0e191a1e72-igh": {"locus": "igh", "paired-uids": ["5b83db58bc-igh", "5b83db58bc-igk"]}, "02c4dcf740-igh": {"locus": "igh", "paired-uids": ["02c4dcf740-igl", "a1f869b08f-igh", "a1f869b08f-igk"]}, "4e6de5d38d-igh": {"locus": "igh", "paired-uids": ["475a17c3bd-igh", "475a17c3bd-igk", "4e6de5d38d-igl"]}, "3de3240f4c-igh": {"locus": "igh", "paired-uids": ["3de3240f4c-igl", "99ec3a50a4-igh", "99ec3a50a4-igk"]}, "88ea4d6f94-igh": {"locus": "igh", "paired-uids": ["dde37df0f3-igh", "dde37df0f3-igk"]}, "94040b8e55-igh": {"locus": "igh", "paired-uids": ["94040b8e55-igl", "997456da00-igh", "997456da00-igk"]}, "96f6ea6b59-igk": {"locus": "igk", "paired-uids": ["2d29c65222-igh", "2d29c65222-igl", "96f6ea6b59-igh"]}, "57810cb714-igk": {"locus": "igk", "paired-uids": ["57810cb714-igh"]}, "da88a0f870-igk": {"locus": "igk", "paired-uids": ["da88a0f870-igh"]}, "962cf676f9-igk": {"locus": "igk", "paired-uids": ["962cf676f9-igh"]}, "8abdecedf6-igk": {"locus": "igk", "paired-uids": ["8abdecedf6-igh"]}, "f9494fc130-igk": {"locus": "igk", "paired-uids": ["f9494fc130-igh"]}, "816fc82f73-igk": {"locus": "igk", "paired-uids": ["816fc82f73-igh"]}, "810f8f7056-igk": {"locus": "igk", "paired-uids": ["810f8f7056-igh", "da96f2c471-igh", "da96f2c471-igl"]}, "997456da00-igk": {"locus": "igk", "paired-uids": ["94040b8e55-igh", "94040b8e55-igl", "997456da00-igh"]}, "047be6c743-igk": {"locus": "igk", "paired-uids": ["047be6c743-igh"]}, "8a4877bbfc-igk": {"locus": "igk", "paired-uids": []}, "7e90b4242e-igk": {"locus": "igk", "paired-uids": ["7e90b4242e-igh"]}, "964f9e33e6-igk": {"locus": "igk", 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