paradigma 0.3.2__py3-none-any.whl → 0.4.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (122) hide show
  1. paradigma/assets/gait_detection_clf_package.pkl +0 -0
  2. paradigma/assets/gait_filtering_clf_package.pkl +0 -0
  3. paradigma/assets/ppg_quality_clf_package.pkl +0 -0
  4. paradigma/assets/tremor_detection_clf_package.pkl +0 -0
  5. paradigma/classification.py +115 -0
  6. paradigma/config.py +314 -0
  7. paradigma/constants.py +48 -7
  8. paradigma/feature_extraction.py +811 -547
  9. paradigma/pipelines/__init__.py +0 -0
  10. paradigma/pipelines/gait_pipeline.py +727 -0
  11. paradigma/pipelines/heart_rate_pipeline.py +426 -0
  12. paradigma/pipelines/heart_rate_utils.py +780 -0
  13. paradigma/pipelines/tremor_pipeline.py +299 -0
  14. paradigma/preprocessing.py +363 -0
  15. paradigma/segmenting.py +396 -0
  16. paradigma/testing.py +416 -0
  17. paradigma/util.py +393 -16
  18. {paradigma-0.3.2.dist-info → paradigma-0.4.0.dist-info}/METADATA +58 -14
  19. paradigma-0.4.0.dist-info/RECORD +22 -0
  20. {paradigma-0.3.2.dist-info → paradigma-0.4.0.dist-info}/WHEEL +1 -1
  21. paradigma/gait_analysis.py +0 -415
  22. paradigma/gait_analysis_config.py +0 -266
  23. paradigma/heart_rate_analysis.py +0 -127
  24. paradigma/heart_rate_analysis_config.py +0 -9
  25. paradigma/heart_rate_util.py +0 -173
  26. paradigma/imu_preprocessing.py +0 -232
  27. paradigma/ppg/classifier/LR_PPG_quality.pkl +0 -0
  28. paradigma/ppg/classifier/LR_model.mat +0 -0
  29. paradigma/ppg/feat_extraction/acc_feature.m +0 -20
  30. paradigma/ppg/feat_extraction/peakdet.m +0 -64
  31. paradigma/ppg/feat_extraction/ppg_features.m +0 -53
  32. paradigma/ppg/glob_functions/extract_hr_segments.m +0 -37
  33. paradigma/ppg/glob_functions/extract_overlapping_segments.m +0 -23
  34. paradigma/ppg/glob_functions/jsonlab/AUTHORS.txt +0 -41
  35. paradigma/ppg/glob_functions/jsonlab/ChangeLog.txt +0 -74
  36. paradigma/ppg/glob_functions/jsonlab/LICENSE_BSD.txt +0 -25
  37. paradigma/ppg/glob_functions/jsonlab/LICENSE_GPLv3.txt +0 -699
  38. paradigma/ppg/glob_functions/jsonlab/README.txt +0 -394
  39. paradigma/ppg/glob_functions/jsonlab/examples/.svn/entries +0 -368
  40. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/demo_jsonlab_basic.m.svn-base +0 -180
  41. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/demo_ubjson_basic.m.svn-base +0 -180
  42. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example1.json.svn-base +0 -23
  43. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example2.json.svn-base +0 -22
  44. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example3.json.svn-base +0 -11
  45. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example4.json.svn-base +0 -34
  46. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_basictest.matlab.svn-base +0 -662
  47. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_selftest.m.svn-base +0 -27
  48. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_selftest.matlab.svn-base +0 -144
  49. paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_speedtest.m.svn-base +0 -21
  50. paradigma/ppg/glob_functions/jsonlab/examples/demo_jsonlab_basic.m +0 -180
  51. paradigma/ppg/glob_functions/jsonlab/examples/demo_ubjson_basic.m +0 -180
  52. paradigma/ppg/glob_functions/jsonlab/examples/example1.json +0 -23
  53. paradigma/ppg/glob_functions/jsonlab/examples/example2.json +0 -22
  54. paradigma/ppg/glob_functions/jsonlab/examples/example3.json +0 -11
  55. paradigma/ppg/glob_functions/jsonlab/examples/example4.json +0 -34
  56. paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_basictest.matlab +0 -662
  57. paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_selftest.m +0 -27
  58. paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_selftest.matlab +0 -144
  59. paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_speedtest.m +0 -21
  60. paradigma/ppg/glob_functions/jsonlab/jsonopt.m +0 -32
  61. paradigma/ppg/glob_functions/jsonlab/loadjson.m +0 -566
  62. paradigma/ppg/glob_functions/jsonlab/loadubjson.m +0 -528
  63. paradigma/ppg/glob_functions/jsonlab/mergestruct.m +0 -33
  64. paradigma/ppg/glob_functions/jsonlab/savejson.m +0 -475
  65. paradigma/ppg/glob_functions/jsonlab/saveubjson.m +0 -504
  66. paradigma/ppg/glob_functions/jsonlab/varargin2struct.m +0 -40
  67. paradigma/ppg/glob_functions/sample_prob_final.m +0 -49
  68. paradigma/ppg/glob_functions/synchronization.m +0 -76
  69. paradigma/ppg/glob_functions/tsdf_scan_meta.m +0 -22
  70. paradigma/ppg/hr_functions/Long_TFD_JOT.m +0 -37
  71. paradigma/ppg/hr_functions/PPG_TFD_HR.m +0 -59
  72. paradigma/ppg/hr_functions/TFD toolbox JOT/.gitignore +0 -4
  73. paradigma/ppg/hr_functions/TFD toolbox JOT/CHANGELOG.md +0 -23
  74. paradigma/ppg/hr_functions/TFD toolbox JOT/LICENCE.md +0 -27
  75. paradigma/ppg/hr_functions/TFD toolbox JOT/README.md +0 -251
  76. paradigma/ppg/hr_functions/TFD toolbox JOT/README.pdf +0 -0
  77. paradigma/ppg/hr_functions/TFD toolbox JOT/common/gen_Doppler_kern.m +0 -142
  78. paradigma/ppg/hr_functions/TFD toolbox JOT/common/gen_Doppler_lag_kern.m +0 -314
  79. paradigma/ppg/hr_functions/TFD toolbox JOT/common/gen_lag_kern.m +0 -123
  80. paradigma/ppg/hr_functions/TFD toolbox JOT/dec_tfd.m +0 -154
  81. paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_di_gdtfd.m +0 -194
  82. paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_li_gdtfd.m +0 -200
  83. paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_nonsep_gdtfd.m +0 -229
  84. paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_sep_gdtfd.m +0 -241
  85. paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/di_gdtfd.m +0 -157
  86. paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/li_gdtfd.m +0 -190
  87. paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/nonsep_gdtfd.m +0 -196
  88. paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/sep_gdtfd.m +0 -199
  89. paradigma/ppg/hr_functions/TFD toolbox JOT/full_tfd.m +0 -144
  90. paradigma/ppg/hr_functions/TFD toolbox JOT/load_curdir.m +0 -13
  91. paradigma/ppg/hr_functions/TFD toolbox JOT/pics/decimated_TFDs_examples.png +0 -0
  92. paradigma/ppg/hr_functions/TFD toolbox JOT/pics/full_TFDs_examples.png +0 -0
  93. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/check_dec_params_seq.m +0 -79
  94. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/dispEE.m +0 -9
  95. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/dispVars.m +0 -26
  96. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/disp_bytes.m +0 -25
  97. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/fold_vector_full.m +0 -40
  98. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/fold_vector_half.m +0 -34
  99. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/gen_LFM.m +0 -29
  100. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/get_analytic_signal.m +0 -76
  101. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/get_window.m +0 -176
  102. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/isreal_fn.m +0 -11
  103. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/padWin.m +0 -97
  104. paradigma/ppg/hr_functions/TFD toolbox JOT/utils/vtfd.m +0 -149
  105. paradigma/ppg/preprocessing/preprocessing_imu.m +0 -15
  106. paradigma/ppg/preprocessing/preprocessing_ppg.m +0 -13
  107. paradigma/ppg_preprocessing.py +0 -313
  108. paradigma/preprocessing_config.py +0 -69
  109. paradigma/quantification.py +0 -58
  110. paradigma/tremor/TremorFeaturesAndClassification.m +0 -345
  111. paradigma/tremor/feat_extraction/DerivativesExtract.m +0 -22
  112. paradigma/tremor/feat_extraction/ExtractBandSignalsRMS.m +0 -72
  113. paradigma/tremor/feat_extraction/MFCCExtract.m +0 -100
  114. paradigma/tremor/feat_extraction/PSDBandPower.m +0 -52
  115. paradigma/tremor/feat_extraction/PSDEst.m +0 -63
  116. paradigma/tremor/feat_extraction/PSDExtrAxis.m +0 -88
  117. paradigma/tremor/feat_extraction/PSDExtrOpt.m +0 -95
  118. paradigma/tremor/preprocessing/InterpData.m +0 -32
  119. paradigma/tremor/weekly_aggregates/WeeklyAggregates.m +0 -295
  120. paradigma/windowing.py +0 -219
  121. paradigma-0.3.2.dist-info/RECORD +0 -108
  122. {paradigma-0.3.2.dist-info → paradigma-0.4.0.dist-info}/LICENSE +0 -0
paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example1.json.svn-base DELETED
@@ -1,23 +0,0 @@
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- {
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- "firstName": "John",
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- "lastName": "Smith",
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- "age": 25,
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- "address":
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- {
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- "streetAddress": "21 2nd Street",
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- "city": "New York",
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- "state": "NY",
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- "postalCode": "10021"
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- },
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- "phoneNumber":
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- [
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- {
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- "type": "home",
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- "number": "212 555-1234"
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- },
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- {
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- "type": "fax",
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- "number": "646 555-4567"
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- }
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- ]
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- }
paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example2.json.svn-base DELETED
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- {
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- "glossary": {
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- "title": "example glossary",
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- "GlossDiv": {
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- "title": "S",
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- "GlossList": {
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- "GlossEntry": {
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- "ID": "SGML",
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- "SortAs": "SGML",
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- "GlossTerm": "Standard Generalized Markup Language",
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- "Acronym": "SGML",
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- "Abbrev": "ISO 8879:1986",
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- "GlossDef": {
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- "para": "A meta-markup language, used to create markup languages such as DocBook.",
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- "GlossSeeAlso": ["GML", "XML"]
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- },
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- "GlossSee": "markup"
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- }
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- }
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- }
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- }
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- }
paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example3.json.svn-base DELETED
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- {"menu": {
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- "id": "file",
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- "value": "_&File",
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- "popup": {
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- "menuitem": [
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- {"value": "_&New", "onclick": "CreateNewDoc(\"\"\")"},
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- {"value": "_&Open", "onclick": "OpenDoc()"},
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- {"value": "_&Close", "onclick": "CloseDoc()"}
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- ]
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- }
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- }}
paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example4.json.svn-base DELETED
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- [
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- {
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- "sample" : {
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- "rho" : 1
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- }
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- },
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- {
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- "sample" : {
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- "rho" : 2
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- }
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- },
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- [
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- {
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- "_ArrayType_" : "double",
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- "_ArraySize_" : [1,2],
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- "_ArrayData_" : [1,0]
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- },
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- {
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- "_ArrayType_" : "double",
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- "_ArraySize_" : [1,2],
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- "_ArrayData_" : [1,1]
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- },
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- {
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- "_ArrayType_" : "double",
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- "_ArraySize_" : [1,2],
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- "_ArrayData_" : [1,2]
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- }
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- ],
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- [
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- "Paper",
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- "Scissors",
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- "Stone"
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- ]
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- ]