paradigma 0.3.1__py3-none-any.whl → 0.4.0__py3-none-any.whl

paradigma/windowing.py

@@ -1,219 +0,0 @@
-import pandas as pd
-import numpy as np
-import math
-
-from typing import Union, List
-
-
-def create_window(
-        df: pd.DataFrame,
-        time_column_name: str,
-        window_nr: int,
-        lower_index: int,
-        upper_index: int,
-        data_point_level_cols: list,
-        segment_nr: int,
-        sampling_frequency: int = 100
-    ) -> list:
-    """Transforms (a subset of) a dataframe into a single row
-
-    Parameters
-    ----------
-    df: pd.DataFrame
-        The original dataframe to be windowed
-    time_column_name: str
-        The name of the time column
-    window_nr: int
-        The identification of the window
-    lower_index: int
-        The dataframe index of the first sample to be windowed
-    upper_index: int
-        The dataframe index of the final sample to be windowed
-    data_point_level_cols: list
-        The columns in sensor_df that are to be kept as individual datapoints in a list instead of aggregates
-    segment_nr: int
-        The identification of the segment
-    sampling_frequency: int, optional
-        The sampling frequency (Hz) of the data (default: 100)
-
-    Returns
-    -------
-    list
-        Rows corresponding to single windows
-    """
-    t_start_window = df.loc[lower_index, time_column_name]
-
-    df_subset = df.loc[lower_index:upper_index, data_point_level_cols].copy()
-    t_start = t_start_window
-    t_end = upper_index/sampling_frequency + t_start_window
-
-    if segment_nr is None:
-        l_subset_squeezed = [window_nr+1, t_start, t_end] + df_subset.values.T.tolist()
-    else:
-        l_subset_squeezed = [segment_nr, window_nr+1, t_start, t_end] + df_subset.values.T.tolist()
-
-    return l_subset_squeezed
-
-
-def tabulate_windows(
-        df: pd.DataFrame,
-        time_column_name: str,
-        data_point_level_cols: list,
-        window_length_s: Union[int, float] = 6,
-        window_step_size_s: Union[int, float] = 1,
-        sampling_frequency: int = 100,
-        segment_nr_colname: Union[str, None] = None,
-        segment_nr: Union[int, None] = None,
-    ) -> pd.DataFrame:
-    """Compiles multiple windows into a single dataframe
-
-    Parameters
-    ----------
-    df: pd.DataFrame
-        The original dataframe to be windowed
-    time_column_name: str
-        The name of the time column
-    data_point_level_cols: list
-        The names of the columns that are to be kept as individual datapoints in a list instead of aggregates
-    window_length_s: int | float, optional
-        The number of seconds a window constitutes (default: 6)
-    window_step_size_s: int | float, optional
-        The number of seconds between the end of the previous and the start of the next window (default: 1)
-    sampling_frequency: int, optional
-        The sampling frequency of the data (default: 100)
-    segment_nr_colname: str, optional
-        The name of the column that identifies the segment; set to None if not applicable (default: None)
-    segment_nr: int, optional
-        The identification of the segment; set to None if not applicable (default: None)
-    
-
-    Returns
-    -------
-    pd.DataFrame
-        Dataframe with each row corresponding to an individual window
-    """
-    window_length = sampling_frequency * window_length_s - 1
-    window_step_size = sampling_frequency * window_step_size_s
-
-    df = df.reset_index(drop=True)
-
-    if window_step_size <= 0:
-        raise Exception("Step size should be larger than 0.")
-    if window_length > df.shape[0]:
-        return 
-
-    l_windows = []
-    n_windows = math.floor(
-        (df.shape[0] - window_length) / 
-         window_step_size
-        ) + 1
-
-    for window_nr in range(n_windows):
-        lower = window_nr * window_step_size
-        upper = window_nr * window_step_size + window_length
-        l_windows.append(
-            create_window(
-                df=df,
-                time_column_name=time_column_name,
-                window_nr=window_nr,
-                lower_index=lower,
-                upper_index=upper,
-                data_point_level_cols=data_point_level_cols,
-                segment_nr=segment_nr,
-                sampling_frequency=sampling_frequency
-            )
-        )
-
-    if segment_nr is None:
-        df_windows = pd.DataFrame(l_windows, columns=['window_nr', 'window_start', 'window_end'] + data_point_level_cols)
-    else:
-        df_windows = pd.DataFrame(l_windows, columns=[segment_nr_colname, 'window_nr', 'window_start', 'window_end'] + data_point_level_cols)
-            
-    return df_windows.reset_index(drop=True)
-
-
-def create_segments(
-        df: pd.DataFrame,
-        time_colname: str,
-        segment_nr_colname: str,
-        minimum_gap_s: int,
-    ) -> pd.DataFrame:
-    """Create segments based on the time column of the dataframe. Segments are defined as continuous time periods.
-    
-    Parameters
-    ----------
-    df: pd.DataFrame
-        The dataframe to be segmented
-    time_colname: str
-        The name of the time column
-    minimum_gap_s: int
-        The minimum gap in seconds to split up the time periods into segments
-
-    Returns
-    -------
-    pd.DataFrame
-        The dataframe with additional columns related to segments
-    """
-    array_new_segments = np.where((df[time_colname] - df[time_colname].shift() > minimum_gap_s), 1, 0)
-    df['new_segment_cumsum'] = array_new_segments.cumsum()
-    df_segments = pd.DataFrame(df.groupby('new_segment_cumsum')[time_colname].count()).reset_index()
-    df_segments.columns = [segment_nr_colname, 'length_segment_s']
-    df_segments[segment_nr_colname] += 1
-
-    df = df.drop(columns=['new_segment_cumsum'])
-
-    cols_to_append = [segment_nr_colname, 'length_segment_s']
-
-    for col in cols_to_append:
-        df[col] = 0
-
-    index_start = 0
-    for _, row in df_segments.iterrows():
-        len_segment = row['length_segment_s']
-
-        for col in cols_to_append:
-            df.loc[index_start:index_start+len_segment-1, col] = row[col]
-
-        index_start += len_segment
-
-    return df
-
-
-def discard_segments(
-        df: pd.DataFrame,
-        time_colname: str,
-        segment_nr_colname: str,
-        minimum_segment_length_s: int,
-    ) -> pd.DataFrame:
-    """Discard segments that are shorter than a specified length.
-    
-    Parameters
-    ----------
-    df: pd.DataFrame
-        The dataframe containing information about the segments
-    time_colname: str
-        The column name of the time column
-    segment_nr_colname: str
-        The column name of the column containing the segment numbers
-    minimum_segment_length_s: int
-        The minimum required length of a segment in seconds
-    
-    Returns
-    -------
-    pd.DataFrame
-        The dataframe with segments that are longer than the specified length
-    """
-    segment_length_bool = df.groupby(segment_nr_colname)[time_colname].apply(lambda x: x.max() - x.min()) > minimum_segment_length_s
-
-    df = df.loc[df[segment_nr_colname].isin(segment_length_bool.loc[segment_length_bool.values].index)]
-
-    # reorder the segments - starting at 1
-    for segment_nr in df[segment_nr_colname].unique():
-        df.loc[df[segment_nr_colname]==segment_nr, f'{segment_nr_colname}_ordered'] = np.where(df[segment_nr_colname].unique()==segment_nr)[0][0] + 1
-
-    df[f'{segment_nr_colname}_ordered'] = df[f'{segment_nr_colname}_ordered'].astype(int)
-
-    df = df.drop(columns=[segment_nr_colname])
-    df = df.rename(columns={f'{segment_nr_colname}_ordered': segment_nr_colname})
-
-    return df

paradigma-0.3.1.dist-info/RECORD

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