paradigma 0.1.5__py3-none-any.whl → 0.3.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- paradigma/__init__.py +1 -3
- paradigma/constants.py +65 -0
- paradigma/feature_extraction.py +703 -0
- paradigma/gait_analysis.py +415 -0
- paradigma/gait_analysis_config.py +266 -0
- paradigma/heart_rate_analysis.py +127 -0
- paradigma/heart_rate_analysis_config.py +9 -0
- paradigma/heart_rate_util.py +173 -0
- paradigma/imu_preprocessing.py +232 -0
- paradigma/ppg/classifier/LR_PPG_quality.pkl +0 -0
- paradigma/ppg/classifier/LR_model.mat +0 -0
- paradigma/ppg/feat_extraction/acc_feature.m +20 -0
- paradigma/ppg/feat_extraction/peakdet.m +64 -0
- paradigma/ppg/feat_extraction/ppg_features.m +53 -0
- paradigma/ppg/glob_functions/extract_hr_segments.m +37 -0
- paradigma/ppg/glob_functions/extract_overlapping_segments.m +23 -0
- paradigma/ppg/glob_functions/jsonlab/AUTHORS.txt +41 -0
- paradigma/ppg/glob_functions/jsonlab/ChangeLog.txt +74 -0
- paradigma/ppg/glob_functions/jsonlab/LICENSE_BSD.txt +25 -0
- paradigma/ppg/glob_functions/jsonlab/LICENSE_GPLv3.txt +699 -0
- paradigma/ppg/glob_functions/jsonlab/README.txt +394 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/entries +368 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/demo_jsonlab_basic.m.svn-base +180 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/demo_ubjson_basic.m.svn-base +180 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example1.json.svn-base +23 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example2.json.svn-base +22 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example3.json.svn-base +11 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/example4.json.svn-base +34 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_basictest.matlab.svn-base +662 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_selftest.m.svn-base +27 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_selftest.matlab.svn-base +144 -0
- paradigma/ppg/glob_functions/jsonlab/examples/.svn/text-base/jsonlab_speedtest.m.svn-base +21 -0
- paradigma/ppg/glob_functions/jsonlab/examples/demo_jsonlab_basic.m +180 -0
- paradigma/ppg/glob_functions/jsonlab/examples/demo_ubjson_basic.m +180 -0
- paradigma/ppg/glob_functions/jsonlab/examples/example1.json +23 -0
- paradigma/ppg/glob_functions/jsonlab/examples/example2.json +22 -0
- paradigma/ppg/glob_functions/jsonlab/examples/example3.json +11 -0
- paradigma/ppg/glob_functions/jsonlab/examples/example4.json +34 -0
- paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_basictest.matlab +662 -0
- paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_selftest.m +27 -0
- paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_selftest.matlab +144 -0
- paradigma/ppg/glob_functions/jsonlab/examples/jsonlab_speedtest.m +21 -0
- paradigma/ppg/glob_functions/jsonlab/jsonopt.m +32 -0
- paradigma/ppg/glob_functions/jsonlab/loadjson.m +566 -0
- paradigma/ppg/glob_functions/jsonlab/loadubjson.m +528 -0
- paradigma/ppg/glob_functions/jsonlab/mergestruct.m +33 -0
- paradigma/ppg/glob_functions/jsonlab/savejson.m +475 -0
- paradigma/ppg/glob_functions/jsonlab/saveubjson.m +504 -0
- paradigma/ppg/glob_functions/jsonlab/varargin2struct.m +40 -0
- paradigma/ppg/glob_functions/sample_prob_final.m +49 -0
- paradigma/ppg/glob_functions/synchronization.m +76 -0
- paradigma/ppg/glob_functions/tsdf_scan_meta.m +22 -0
- paradigma/ppg/hr_functions/Long_TFD_JOT.m +37 -0
- paradigma/ppg/hr_functions/PPG_TFD_HR.m +59 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/.gitignore +4 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/CHANGELOG.md +23 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/LICENCE.md +27 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/README.md +251 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/README.pdf +0 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/common/gen_Doppler_kern.m +142 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/common/gen_Doppler_lag_kern.m +314 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/common/gen_lag_kern.m +123 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/dec_tfd.m +154 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_di_gdtfd.m +194 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_li_gdtfd.m +200 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_nonsep_gdtfd.m +229 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/decimated_TFDs/dec_sep_gdtfd.m +241 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/di_gdtfd.m +157 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/li_gdtfd.m +190 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/nonsep_gdtfd.m +196 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/full_TFDs/sep_gdtfd.m +199 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/full_tfd.m +144 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/load_curdir.m +13 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/pics/decimated_TFDs_examples.png +0 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/pics/full_TFDs_examples.png +0 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/check_dec_params_seq.m +79 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/dispEE.m +9 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/dispVars.m +26 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/disp_bytes.m +25 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/fold_vector_full.m +40 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/fold_vector_half.m +34 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/gen_LFM.m +29 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/get_analytic_signal.m +76 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/get_window.m +176 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/isreal_fn.m +11 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/padWin.m +97 -0
- paradigma/ppg/hr_functions/TFD toolbox JOT/utils/vtfd.m +149 -0
- paradigma/ppg/preprocessing/preprocessing_imu.m +15 -0
- paradigma/ppg/preprocessing/preprocessing_ppg.m +13 -0
- paradigma/ppg_preprocessing.py +313 -0
- paradigma/preprocessing_config.py +69 -0
- paradigma/quantification.py +58 -0
- paradigma/tremor/TremorFeaturesAndClassification.m +345 -0
- paradigma/tremor/feat_extraction/DerivativesExtract.m +22 -0
- paradigma/tremor/feat_extraction/ExtractBandSignalsRMS.m +72 -0
- paradigma/tremor/feat_extraction/MFCCExtract.m +100 -0
- paradigma/tremor/feat_extraction/PSDBandPower.m +52 -0
- paradigma/tremor/feat_extraction/PSDEst.m +63 -0
- paradigma/tremor/feat_extraction/PSDExtrAxis.m +88 -0
- paradigma/tremor/feat_extraction/PSDExtrOpt.m +95 -0
- paradigma/tremor/preprocessing/InterpData.m +32 -0
- paradigma/tremor/weekly_aggregates/WeeklyAggregates.m +295 -0
- paradigma/util.py +50 -0
- paradigma/windowing.py +219 -0
- paradigma-0.3.0.dist-info/LICENSE +192 -0
- paradigma-0.3.0.dist-info/METADATA +79 -0
- paradigma-0.3.0.dist-info/RECORD +108 -0
- paradigma/dummy.py +0 -3
- paradigma-0.1.5.dist-info/LICENSE +0 -201
- paradigma-0.1.5.dist-info/METADATA +0 -18
- paradigma-0.1.5.dist-info/RECORD +0 -6
- {paradigma-0.1.5.dist-info → paradigma-0.3.0.dist-info}/WHEEL +0 -0
paradigma/__init__.py
CHANGED
paradigma/constants.py
ADDED
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from dataclasses import dataclass
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@dataclass(frozen=True)
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class DataColumns():
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"""
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Class containing the data channels in `tsdf`.
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"""
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ACCELEROMETER_X : str = "accelerometer_x"
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ACCELEROMETER_Y : str = "accelerometer_y"
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ACCELEROMETER_Z : str = "accelerometer_z"
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GYROSCOPE_X : str = "gyroscope_x"
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GYROSCOPE_Y : str = "gyroscope_y"
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GYROSCOPE_Z : str = "gyroscope_z"
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PPG : str = "green"
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TIME : str = "time"
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# The following are used in gait analysis
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GRAV_ACCELEROMETER_X : str = "grav_accelerometer_x"
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GRAV_ACCELEROMETER_Y : str = "grav_accelerometer_y"
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GRAV_ACCELEROMETER_Z : str = "grav_accelerometer_z"
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PRED_GAIT : str = "pred_gait"
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PRED_ARM_SWING : str = "pred_arm_swing"
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ANGLE : str = "angle"
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ANGLE_SMOOTH : str = "angle_smooth"
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VELOCITY : str = "velocity"
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SEGMENT_NR : str = "segment_nr"
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@dataclass(frozen=True)
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class DataUnits():
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"""
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Class containing the data channel unit types in `tsdf`.
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"""
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ACCELERATION: str = "m/s^2"
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""" The acceleration is in m/s^2. """
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ROTATION: str = "deg/s"
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""" The rotation is in degrees per second. """
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GRAVITY: str = "g"
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""" The acceleration due to gravity is in g. """
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POWER_SPECTRAL_DENSITY: str = "g^2/Hz"
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""" The power spectral density is in g^2/Hz. """
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FREQUENCY: str = "Hz"
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""" The frequency is in Hz. """
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NONE: str = "none"
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""" The data channel has no unit. """
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@dataclass(frozen=True)
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class TimeUnit():
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"""
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Class containing the `time` channel unit types in `tsdf`.
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"""
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RELATIVE_MS : str = "relative_ms"
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""" The time is relative to the start time in milliseconds. """
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ABSOLUTE_MS : str = "absolute_ms"
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""" The time is absolute in milliseconds. """
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DIFFERENCE_MS : str = "difference_ms"
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""" The time is the difference between consecutive samples in milliseconds. """
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UNIX_TICKS_MS: int = 1000
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