oscura 0.0.1__py3-none-any.whl → 0.1.1__py3-none-any.whl

oscura/triggering/pulse.py

@@ -0,0 +1,581 @@
+"""Pulse width and glitch triggering for Oscura.
+
+Provides pulse width triggering, glitch detection, and runt pulse
+detection for signal integrity analysis.
+
+Example:
+    >>> from oscura.triggering.pulse import PulseWidthTrigger, find_glitches
+    >>> # Find pulses between 100ns and 200ns
+    >>> trigger = PulseWidthTrigger(level=1.5, min_width=100e-9, max_width=200e-9)
+    >>> events = trigger.find_events(trace)
+    >>> # Find glitches shorter than 50ns
+    >>> glitches = find_glitches(trace, max_width=50e-9)
+"""
+
+from __future__ import annotations
+
+from dataclasses import dataclass
+from typing import Literal
+
+import numpy as np
+
+from oscura.core.exceptions import AnalysisError
+from oscura.core.types import DigitalTrace, WaveformTrace
+from oscura.triggering.base import (
+    Trigger,
+    TriggerEvent,
+    TriggerType,
+    interpolate_crossing,
+)
+
+
+@dataclass
+class PulseInfo:
+    """Information about a detected pulse.
+
+    Attributes:
+        start_time: Start time of pulse in seconds.
+        end_time: End time of pulse in seconds.
+        width: Pulse width in seconds.
+        polarity: "positive" or "negative".
+        start_index: Sample index at pulse start.
+        end_index: Sample index at pulse end.
+        amplitude: Peak amplitude during pulse.
+    """
+
+    start_time: float
+    end_time: float
+    width: float
+    polarity: Literal["positive", "negative"]
+    start_index: int
+    end_index: int
+    amplitude: float
+
+
+class PulseWidthTrigger(Trigger):
+    """Pulse width trigger for detecting pulses in a width range.
+
+    Triggers on pulses that fall within the specified width range.
+
+    Attributes:
+        level: Threshold level for pulse detection.
+        polarity: Pulse polarity - "positive", "negative", or "either".
+        min_width: Minimum pulse width (None for no minimum).
+        max_width: Maximum pulse width (None for no maximum).
+    """
+
+    def __init__(
+        self,
+        level: float,
+        polarity: Literal["positive", "negative", "either"] = "positive",
+        min_width: float | None = None,
+        max_width: float | None = None,
+    ) -> None:
+        """Initialize pulse width trigger.
+
+        Args:
+            level: Threshold level for pulse detection.
+            polarity: Pulse polarity to detect.
+            min_width: Minimum pulse width in seconds.
+            max_width: Maximum pulse width in seconds.
+
+        Raises:
+            AnalysisError: If min_width is greater than max_width.
+        """
+        self.level = level
+        self.polarity = polarity
+        self.min_width = min_width
+        self.max_width = max_width
+
+        if min_width is not None and max_width is not None and min_width > max_width:
+            raise AnalysisError("min_width cannot be greater than max_width")
+
+    def find_events(
+        self,
+        trace: WaveformTrace | DigitalTrace,
+    ) -> list[TriggerEvent]:
+        """Find pulses matching the width criteria.
+
+        Args:
+            trace: Input trace.
+
+        Returns:
+            List of trigger events for matching pulses.
+        """
+        pulses = self._find_all_pulses(trace)
+
+        # Filter by width
+        events: list[TriggerEvent] = []
+        for pulse in pulses:
+            if self.min_width is not None and pulse.width < self.min_width:
+                continue
+            if self.max_width is not None and pulse.width > self.max_width:
+                continue
+
+            events.append(
+                TriggerEvent(
+                    timestamp=pulse.start_time,
+                    sample_index=pulse.start_index,
+                    event_type=TriggerType.PULSE_WIDTH,
+                    level=pulse.amplitude,
+                    duration=pulse.width,
+                    data={
+                        "polarity": pulse.polarity,
+                        "end_time": pulse.end_time,
+                        "end_index": pulse.end_index,
+                    },
+                )
+            )
+
+        return events
+
+    def _find_all_pulses(
+        self,
+        trace: WaveformTrace | DigitalTrace,
+    ) -> list[PulseInfo]:
+        """Find all pulses in the trace."""
+        if isinstance(trace, DigitalTrace):
+            data = trace.data.astype(np.float64)
+            level = 0.5
+        else:
+            data = trace.data
+            level = self.level
+
+        sample_period = trace.metadata.time_base
+        pulses: list[PulseInfo] = []
+
+        # Find all threshold crossings
+        above = data >= level
+        below = data < level
+
+        # Rising edges: transition from below to above
+        rising = np.where(below[:-1] & above[1:])[0]
+        # Falling edges: transition from above to below
+        falling = np.where(above[:-1] & below[1:])[0]
+
+        if self.polarity in ("positive", "either"):
+            # Positive pulses: rising -> falling
+            for r_idx in rising:
+                # Find next falling edge
+                next_falling = falling[falling > r_idx]
+                if len(next_falling) == 0:
+                    continue
+                f_idx = next_falling[0]
+
+                start_time = interpolate_crossing(data, r_idx, level, sample_period, True)
+                end_time = interpolate_crossing(data, f_idx, level, sample_period, False)
+                width = end_time - start_time
+
+                # Get peak amplitude
+                pulse_data = data[r_idx : f_idx + 1]
+                amplitude = float(np.max(pulse_data)) if len(pulse_data) > 0 else level
+
+                pulses.append(
+                    PulseInfo(
+                        start_time=start_time,
+                        end_time=end_time,
+                        width=width,
+                        polarity="positive",
+                        start_index=int(r_idx),
+                        end_index=int(f_idx),
+                        amplitude=amplitude,
+                    )
+                )
+
+        if self.polarity in ("negative", "either"):
+            # Negative pulses: falling -> rising
+            for f_idx in falling:
+                # Find next rising edge
+                next_rising = rising[rising > f_idx]
+                if len(next_rising) == 0:
+                    continue
+                r_idx = next_rising[0]
+
+                start_time = interpolate_crossing(data, f_idx, level, sample_period, False)
+                end_time = interpolate_crossing(data, r_idx, level, sample_period, True)
+                width = end_time - start_time
+
+                # Get peak (minimum) amplitude
+                pulse_data = data[f_idx : r_idx + 1]
+                amplitude = float(np.min(pulse_data)) if len(pulse_data) > 0 else level
+
+                pulses.append(
+                    PulseInfo(
+                        start_time=start_time,
+                        end_time=end_time,
+                        width=width,
+                        polarity="negative",
+                        start_index=int(f_idx),
+                        end_index=int(r_idx),
+                        amplitude=amplitude,
+                    )
+                )
+
+        # Sort by start time
+        pulses.sort(key=lambda p: p.start_time)
+        return pulses
+
+
+class GlitchTrigger(Trigger):
+    """Glitch trigger for detecting narrow pulses.
+
+    Glitches are pulses shorter than a maximum width threshold.
+
+    Attributes:
+        level: Threshold level.
+        max_width: Maximum pulse width to be considered a glitch.
+        polarity: Glitch polarity - "positive", "negative", or "either".
+    """
+
+    def __init__(
+        self,
+        level: float,
+        max_width: float = 100e-9,
+        polarity: Literal["positive", "negative", "either"] = "either",
+    ) -> None:
+        """Initialize glitch trigger.
+
+        Args:
+            level: Threshold level.
+            max_width: Maximum pulse width to trigger (in seconds).
+            polarity: Glitch polarity to detect.
+        """
+        self.level = level
+        self.max_width = max_width
+        self.polarity = polarity
+
+    def find_events(
+        self,
+        trace: WaveformTrace | DigitalTrace,
+    ) -> list[TriggerEvent]:
+        """Find all glitches in the trace.
+
+        Args:
+            trace: Input trace.
+
+        Returns:
+            List of trigger events for each glitch.
+        """
+        pulse_trigger = PulseWidthTrigger(
+            level=self.level,
+            polarity=self.polarity,
+            min_width=None,
+            max_width=self.max_width,
+        )
+
+        events = pulse_trigger.find_events(trace)
+
+        # Reclassify as glitch events
+        for event in events:
+            event.event_type = TriggerType.GLITCH
+
+        return events
+
+
+class RuntTrigger(Trigger):
+    """Runt pulse trigger for detecting incomplete transitions.
+
+    Runt pulses cross one threshold but not the other, indicating
+    incomplete signal transitions.
+
+    Attributes:
+        low_threshold: Lower threshold level.
+        high_threshold: Upper threshold level.
+        polarity: Runt polarity - "positive", "negative", or "either".
+    """
+
+    def __init__(
+        self,
+        low_threshold: float,
+        high_threshold: float,
+        polarity: Literal["positive", "negative", "either"] = "either",
+    ) -> None:
+        """Initialize runt trigger.
+
+        Args:
+            low_threshold: Lower threshold (e.g., logic low).
+            high_threshold: Upper threshold (e.g., logic high).
+            polarity: "positive" for rising runts, "negative" for falling.
+
+        Raises:
+            AnalysisError: If low_threshold is not less than high_threshold.
+        """
+        if low_threshold >= high_threshold:
+            raise AnalysisError("low_threshold must be less than high_threshold")
+
+        self.low_threshold = low_threshold
+        self.high_threshold = high_threshold
+        self.polarity = polarity
+
+    def find_events(
+        self,
+        trace: WaveformTrace | DigitalTrace,
+    ) -> list[TriggerEvent]:
+        """Find all runt pulses in the trace.
+
+        Args:
+            trace: Input trace.
+
+        Returns:
+            List of trigger events for each runt pulse.
+        """
+        if isinstance(trace, DigitalTrace):
+            # Digital traces don't have runts
+            return []
+
+        data = trace.data
+        sample_period = trace.metadata.time_base
+        events: list[TriggerEvent] = []
+
+        # Track signal zones
+        # Zone 0: below low_threshold
+        # Zone 1: between thresholds
+        # Zone 2: above high_threshold
+        def get_zone(value: float) -> int:
+            if value < self.low_threshold:
+                return 0
+            elif value > self.high_threshold:
+                return 2
+            else:
+                return 1
+
+        zones = np.array([get_zone(v) for v in data])
+
+        # Find runt pulses: transitions that enter zone 1 but don't reach the other side
+        i = 0
+        while i < len(zones) - 1:
+            curr_zone = zones[i]
+
+            if curr_zone == 0:
+                # Starting low - look for positive runt
+                if self.polarity in ("positive", "either"):
+                    # Find transition to zone 1
+                    if zones[i + 1] == 1:
+                        start_idx = i
+                        # Track through zone 1
+                        j = i + 1
+                        while j < len(zones) and zones[j] == 1:
+                            j += 1
+                        if j < len(zones) and zones[j] == 0:
+                            # Returned to low without reaching high - RUNT
+                            peak = float(np.max(data[start_idx : j + 1]))
+                            events.append(
+                                TriggerEvent(
+                                    timestamp=start_idx * sample_period,
+                                    sample_index=start_idx,
+                                    event_type=TriggerType.RUNT,
+                                    level=peak,
+                                    duration=(j - start_idx) * sample_period,
+                                    data={
+                                        "polarity": "positive",
+                                        "expected_high": self.high_threshold,
+                                        "actual_peak": peak,
+                                    },
+                                )
+                            )
+                        i = j
+                        continue
+
+            elif curr_zone == 2:
+                # Starting high - look for negative runt
+                if self.polarity in ("negative", "either") and zones[i + 1] == 1:
+                    start_idx = i
+                    j = i + 1
+                    while j < len(zones) and zones[j] == 1:
+                        j += 1
+                    if j < len(zones) and zones[j] == 2:
+                        # Returned to high without reaching low - RUNT
+                        trough = float(np.min(data[start_idx : j + 1]))
+                        events.append(
+                            TriggerEvent(
+                                timestamp=start_idx * sample_period,
+                                sample_index=start_idx,
+                                event_type=TriggerType.RUNT,
+                                level=trough,
+                                duration=(j - start_idx) * sample_period,
+                                data={
+                                    "polarity": "negative",
+                                    "expected_low": self.low_threshold,
+                                    "actual_trough": trough,
+                                },
+                            )
+                        )
+                    i = j
+                    continue
+
+            i += 1
+
+        return events
+
+
+def find_pulses(
+    trace: WaveformTrace,
+    *,
+    level: float | None = None,
+    polarity: Literal["positive", "negative", "either"] = "positive",
+    min_width: float | None = None,
+    max_width: float | None = None,
+) -> list[TriggerEvent]:
+    """Find pulses matching width criteria.
+
+    Args:
+        trace: Input waveform trace.
+        level: Threshold level. If None, uses 50% of amplitude.
+        polarity: Pulse polarity to find.
+        min_width: Minimum pulse width in seconds.
+        max_width: Maximum pulse width in seconds.
+
+    Returns:
+        List of trigger events for matching pulses.
+
+    Example:
+        >>> # Find all positive pulses between 1us and 10us
+        >>> pulses = find_pulses(trace, min_width=1e-6, max_width=10e-6)
+    """
+    if level is None:
+        level = (np.min(trace.data) + np.max(trace.data)) / 2
+
+    trigger = PulseWidthTrigger(
+        level=level,
+        polarity=polarity,
+        min_width=min_width,
+        max_width=max_width,
+    )
+    return trigger.find_events(trace)
+
+
+def find_glitches(
+    trace: WaveformTrace,
+    max_width: float = 100e-9,
+    *,
+    level: float | None = None,
+    polarity: Literal["positive", "negative", "either"] = "either",
+) -> list[TriggerEvent]:
+    """Find glitches (narrow pulses) in a trace.
+
+    Args:
+        trace: Input waveform trace.
+        max_width: Maximum width to be considered a glitch (default 100ns).
+        level: Threshold level. If None, uses 50% of amplitude.
+        polarity: Glitch polarity to find.
+
+    Returns:
+        List of trigger events for each glitch.
+
+    Example:
+        >>> # Find all glitches shorter than 50ns
+        >>> glitches = find_glitches(trace, max_width=50e-9)
+        >>> print(f"Found {len(glitches)} glitches")
+    """
+    if level is None:
+        level = (np.min(trace.data) + np.max(trace.data)) / 2
+
+    trigger = GlitchTrigger(
+        level=level,
+        max_width=max_width,
+        polarity=polarity,
+    )
+    return trigger.find_events(trace)
+
+
+def find_runt_pulses(
+    trace: WaveformTrace,
+    low_threshold: float | None = None,
+    high_threshold: float | None = None,
+    *,
+    polarity: Literal["positive", "negative", "either"] = "either",
+) -> list[TriggerEvent]:
+    """Find runt pulses (incomplete transitions) in a trace.
+
+    Args:
+        trace: Input waveform trace.
+        low_threshold: Lower threshold. If None, uses 20% of amplitude.
+        high_threshold: Upper threshold. If None, uses 80% of amplitude.
+        polarity: Runt polarity to find.
+
+    Returns:
+        List of trigger events for each runt pulse.
+
+    Example:
+        >>> # Find runts using standard 20%/80% thresholds
+        >>> runts = find_runt_pulses(trace)
+        >>> for runt in runts:
+        ...     print(f"Runt at {runt.timestamp*1e6:.2f} us")
+    """
+    if low_threshold is None:
+        amplitude = np.max(trace.data) - np.min(trace.data)
+        low_threshold = np.min(trace.data) + 0.2 * amplitude
+
+    if high_threshold is None:
+        amplitude = np.max(trace.data) - np.min(trace.data)
+        high_threshold = np.min(trace.data) + 0.8 * amplitude
+
+    trigger = RuntTrigger(
+        low_threshold=low_threshold,
+        high_threshold=high_threshold,
+        polarity=polarity,
+    )
+    return trigger.find_events(trace)
+
+
+def pulse_statistics(
+    trace: WaveformTrace,
+    *,
+    level: float | None = None,
+    polarity: Literal["positive", "negative"] = "positive",
+) -> dict[str, float]:
+    """Calculate pulse width statistics.
+
+    Args:
+        trace: Input waveform trace.
+        level: Threshold level.
+        polarity: Pulse polarity to analyze.
+
+    Returns:
+        Dictionary with pulse statistics:
+        - count: Number of pulses
+        - min_width: Minimum pulse width
+        - max_width: Maximum pulse width
+        - mean_width: Mean pulse width
+        - std_width: Standard deviation of pulse widths
+
+    Example:
+        >>> stats = pulse_statistics(trace)
+        >>> print(f"Mean pulse width: {stats['mean_width']*1e6:.2f} us")
+    """
+    if level is None:
+        level = (np.min(trace.data) + np.max(trace.data)) / 2
+
+    trigger = PulseWidthTrigger(level=level, polarity=polarity)
+    events = trigger.find_events(trace)
+
+    if len(events) == 0:
+        return {
+            "count": 0,
+            "min_width": np.nan,
+            "max_width": np.nan,
+            "mean_width": np.nan,
+            "std_width": np.nan,
+        }
+
+    widths = np.array([e.duration for e in events if e.duration is not None])
+
+    return {
+        "count": len(widths),
+        "min_width": float(np.min(widths)),
+        "max_width": float(np.max(widths)),
+        "mean_width": float(np.mean(widths)),
+        "std_width": float(np.std(widths)),
+    }
+
+
+__all__ = [
+    "GlitchTrigger",
+    "PulseInfo",
+    "PulseWidthTrigger",
+    "RuntTrigger",
+    "find_glitches",
+    "find_pulses",
+    "find_runt_pulses",
+    "pulse_statistics",
+]