opentrons 8.6.0a1__py3-none-any.whl

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  1. opentrons/__init__.py +150 -0
  2. opentrons/_version.py +34 -0
  3. opentrons/calibration_storage/__init__.py +54 -0
  4. opentrons/calibration_storage/deck_configuration.py +62 -0
  5. opentrons/calibration_storage/encoder_decoder.py +31 -0
  6. opentrons/calibration_storage/file_operators.py +142 -0
  7. opentrons/calibration_storage/helpers.py +103 -0
  8. opentrons/calibration_storage/ot2/__init__.py +34 -0
  9. opentrons/calibration_storage/ot2/deck_attitude.py +85 -0
  10. opentrons/calibration_storage/ot2/mark_bad_calibration.py +27 -0
  11. opentrons/calibration_storage/ot2/models/__init__.py +0 -0
  12. opentrons/calibration_storage/ot2/models/v1.py +149 -0
  13. opentrons/calibration_storage/ot2/pipette_offset.py +129 -0
  14. opentrons/calibration_storage/ot2/tip_length.py +281 -0
  15. opentrons/calibration_storage/ot3/__init__.py +31 -0
  16. opentrons/calibration_storage/ot3/deck_attitude.py +83 -0
  17. opentrons/calibration_storage/ot3/gripper_offset.py +156 -0
  18. opentrons/calibration_storage/ot3/models/__init__.py +0 -0
  19. opentrons/calibration_storage/ot3/models/v1.py +122 -0
  20. opentrons/calibration_storage/ot3/module_offset.py +138 -0
  21. opentrons/calibration_storage/ot3/pipette_offset.py +95 -0
  22. opentrons/calibration_storage/types.py +45 -0
  23. opentrons/cli/__init__.py +21 -0
  24. opentrons/cli/__main__.py +5 -0
  25. opentrons/cli/analyze.py +501 -0
  26. opentrons/config/__init__.py +631 -0
  27. opentrons/config/advanced_settings.py +871 -0
  28. opentrons/config/defaults_ot2.py +214 -0
  29. opentrons/config/defaults_ot3.py +499 -0
  30. opentrons/config/feature_flags.py +86 -0
  31. opentrons/config/gripper_config.py +55 -0
  32. opentrons/config/reset.py +203 -0
  33. opentrons/config/robot_configs.py +187 -0
  34. opentrons/config/types.py +183 -0
  35. opentrons/drivers/__init__.py +0 -0
  36. opentrons/drivers/absorbance_reader/__init__.py +11 -0
  37. opentrons/drivers/absorbance_reader/abstract.py +72 -0
  38. opentrons/drivers/absorbance_reader/async_byonoy.py +352 -0
  39. opentrons/drivers/absorbance_reader/driver.py +81 -0
  40. opentrons/drivers/absorbance_reader/hid_protocol.py +161 -0
  41. opentrons/drivers/absorbance_reader/simulator.py +84 -0
  42. opentrons/drivers/asyncio/__init__.py +0 -0
  43. opentrons/drivers/asyncio/communication/__init__.py +22 -0
  44. opentrons/drivers/asyncio/communication/async_serial.py +183 -0
  45. opentrons/drivers/asyncio/communication/errors.py +88 -0
  46. opentrons/drivers/asyncio/communication/serial_connection.py +552 -0
  47. opentrons/drivers/command_builder.py +102 -0
  48. opentrons/drivers/flex_stacker/__init__.py +13 -0
  49. opentrons/drivers/flex_stacker/abstract.py +214 -0
  50. opentrons/drivers/flex_stacker/driver.py +768 -0
  51. opentrons/drivers/flex_stacker/errors.py +68 -0
  52. opentrons/drivers/flex_stacker/simulator.py +309 -0
  53. opentrons/drivers/flex_stacker/types.py +367 -0
  54. opentrons/drivers/flex_stacker/utils.py +19 -0
  55. opentrons/drivers/heater_shaker/__init__.py +5 -0
  56. opentrons/drivers/heater_shaker/abstract.py +76 -0
  57. opentrons/drivers/heater_shaker/driver.py +204 -0
  58. opentrons/drivers/heater_shaker/simulator.py +94 -0
  59. opentrons/drivers/mag_deck/__init__.py +6 -0
  60. opentrons/drivers/mag_deck/abstract.py +44 -0
  61. opentrons/drivers/mag_deck/driver.py +208 -0
  62. opentrons/drivers/mag_deck/simulator.py +63 -0
  63. opentrons/drivers/rpi_drivers/__init__.py +33 -0
  64. opentrons/drivers/rpi_drivers/dev_types.py +94 -0
  65. opentrons/drivers/rpi_drivers/gpio.py +282 -0
  66. opentrons/drivers/rpi_drivers/gpio_simulator.py +127 -0
  67. opentrons/drivers/rpi_drivers/interfaces.py +15 -0
  68. opentrons/drivers/rpi_drivers/types.py +364 -0
  69. opentrons/drivers/rpi_drivers/usb.py +102 -0
  70. opentrons/drivers/rpi_drivers/usb_simulator.py +22 -0
  71. opentrons/drivers/serial_communication.py +151 -0
  72. opentrons/drivers/smoothie_drivers/__init__.py +4 -0
  73. opentrons/drivers/smoothie_drivers/connection.py +51 -0
  74. opentrons/drivers/smoothie_drivers/constants.py +121 -0
  75. opentrons/drivers/smoothie_drivers/driver_3_0.py +1933 -0
  76. opentrons/drivers/smoothie_drivers/errors.py +49 -0
  77. opentrons/drivers/smoothie_drivers/parse_utils.py +143 -0
  78. opentrons/drivers/smoothie_drivers/simulator.py +99 -0
  79. opentrons/drivers/smoothie_drivers/types.py +16 -0
  80. opentrons/drivers/temp_deck/__init__.py +10 -0
  81. opentrons/drivers/temp_deck/abstract.py +54 -0
  82. opentrons/drivers/temp_deck/driver.py +197 -0
  83. opentrons/drivers/temp_deck/simulator.py +57 -0
  84. opentrons/drivers/thermocycler/__init__.py +12 -0
  85. opentrons/drivers/thermocycler/abstract.py +99 -0
  86. opentrons/drivers/thermocycler/driver.py +395 -0
  87. opentrons/drivers/thermocycler/simulator.py +126 -0
  88. opentrons/drivers/types.py +107 -0
  89. opentrons/drivers/utils.py +222 -0
  90. opentrons/execute.py +742 -0
  91. opentrons/hardware_control/__init__.py +65 -0
  92. opentrons/hardware_control/__main__.py +77 -0
  93. opentrons/hardware_control/adapters.py +98 -0
  94. opentrons/hardware_control/api.py +1347 -0
  95. opentrons/hardware_control/backends/__init__.py +7 -0
  96. opentrons/hardware_control/backends/controller.py +400 -0
  97. opentrons/hardware_control/backends/errors.py +9 -0
  98. opentrons/hardware_control/backends/estop_state.py +164 -0
  99. opentrons/hardware_control/backends/flex_protocol.py +497 -0
  100. opentrons/hardware_control/backends/ot3controller.py +1930 -0
  101. opentrons/hardware_control/backends/ot3simulator.py +900 -0
  102. opentrons/hardware_control/backends/ot3utils.py +664 -0
  103. opentrons/hardware_control/backends/simulator.py +442 -0
  104. opentrons/hardware_control/backends/status_bar_state.py +240 -0
  105. opentrons/hardware_control/backends/subsystem_manager.py +431 -0
  106. opentrons/hardware_control/backends/tip_presence_manager.py +173 -0
  107. opentrons/hardware_control/backends/types.py +14 -0
  108. opentrons/hardware_control/constants.py +6 -0
  109. opentrons/hardware_control/dev_types.py +125 -0
  110. opentrons/hardware_control/emulation/__init__.py +0 -0
  111. opentrons/hardware_control/emulation/abstract_emulator.py +21 -0
  112. opentrons/hardware_control/emulation/app.py +56 -0
  113. opentrons/hardware_control/emulation/connection_handler.py +38 -0
  114. opentrons/hardware_control/emulation/heater_shaker.py +150 -0
  115. opentrons/hardware_control/emulation/magdeck.py +60 -0
  116. opentrons/hardware_control/emulation/module_server/__init__.py +8 -0
  117. opentrons/hardware_control/emulation/module_server/client.py +78 -0
  118. opentrons/hardware_control/emulation/module_server/helpers.py +130 -0
  119. opentrons/hardware_control/emulation/module_server/models.py +31 -0
  120. opentrons/hardware_control/emulation/module_server/server.py +110 -0
  121. opentrons/hardware_control/emulation/parser.py +74 -0
  122. opentrons/hardware_control/emulation/proxy.py +241 -0
  123. opentrons/hardware_control/emulation/run_emulator.py +68 -0
  124. opentrons/hardware_control/emulation/scripts/__init__.py +0 -0
  125. opentrons/hardware_control/emulation/scripts/run_app.py +54 -0
  126. opentrons/hardware_control/emulation/scripts/run_module_emulator.py +72 -0
  127. opentrons/hardware_control/emulation/scripts/run_smoothie.py +37 -0
  128. opentrons/hardware_control/emulation/settings.py +119 -0
  129. opentrons/hardware_control/emulation/simulations.py +133 -0
  130. opentrons/hardware_control/emulation/smoothie.py +192 -0
  131. opentrons/hardware_control/emulation/tempdeck.py +69 -0
  132. opentrons/hardware_control/emulation/thermocycler.py +128 -0
  133. opentrons/hardware_control/emulation/types.py +10 -0
  134. opentrons/hardware_control/emulation/util.py +38 -0
  135. opentrons/hardware_control/errors.py +43 -0
  136. opentrons/hardware_control/execution_manager.py +164 -0
  137. opentrons/hardware_control/instruments/__init__.py +5 -0
  138. opentrons/hardware_control/instruments/instrument_abc.py +39 -0
  139. opentrons/hardware_control/instruments/ot2/__init__.py +0 -0
  140. opentrons/hardware_control/instruments/ot2/instrument_calibration.py +152 -0
  141. opentrons/hardware_control/instruments/ot2/pipette.py +777 -0
  142. opentrons/hardware_control/instruments/ot2/pipette_handler.py +995 -0
  143. opentrons/hardware_control/instruments/ot3/__init__.py +0 -0
  144. opentrons/hardware_control/instruments/ot3/gripper.py +420 -0
  145. opentrons/hardware_control/instruments/ot3/gripper_handler.py +173 -0
  146. opentrons/hardware_control/instruments/ot3/instrument_calibration.py +214 -0
  147. opentrons/hardware_control/instruments/ot3/pipette.py +858 -0
  148. opentrons/hardware_control/instruments/ot3/pipette_handler.py +1030 -0
  149. opentrons/hardware_control/module_control.py +332 -0
  150. opentrons/hardware_control/modules/__init__.py +69 -0
  151. opentrons/hardware_control/modules/absorbance_reader.py +373 -0
  152. opentrons/hardware_control/modules/errors.py +7 -0
  153. opentrons/hardware_control/modules/flex_stacker.py +948 -0
  154. opentrons/hardware_control/modules/heater_shaker.py +426 -0
  155. opentrons/hardware_control/modules/lid_temp_status.py +35 -0
  156. opentrons/hardware_control/modules/magdeck.py +233 -0
  157. opentrons/hardware_control/modules/mod_abc.py +245 -0
  158. opentrons/hardware_control/modules/module_calibration.py +93 -0
  159. opentrons/hardware_control/modules/plate_temp_status.py +61 -0
  160. opentrons/hardware_control/modules/tempdeck.py +299 -0
  161. opentrons/hardware_control/modules/thermocycler.py +731 -0
  162. opentrons/hardware_control/modules/types.py +417 -0
  163. opentrons/hardware_control/modules/update.py +255 -0
  164. opentrons/hardware_control/modules/utils.py +73 -0
  165. opentrons/hardware_control/motion_utilities.py +318 -0
  166. opentrons/hardware_control/nozzle_manager.py +422 -0
  167. opentrons/hardware_control/ot3_calibration.py +1171 -0
  168. opentrons/hardware_control/ot3api.py +3227 -0
  169. opentrons/hardware_control/pause_manager.py +31 -0
  170. opentrons/hardware_control/poller.py +112 -0
  171. opentrons/hardware_control/protocols/__init__.py +106 -0
  172. opentrons/hardware_control/protocols/asyncio_configurable.py +11 -0
  173. opentrons/hardware_control/protocols/calibratable.py +45 -0
  174. opentrons/hardware_control/protocols/chassis_accessory_manager.py +90 -0
  175. opentrons/hardware_control/protocols/configurable.py +48 -0
  176. opentrons/hardware_control/protocols/event_sourcer.py +18 -0
  177. opentrons/hardware_control/protocols/execution_controllable.py +33 -0
  178. opentrons/hardware_control/protocols/flex_calibratable.py +96 -0
  179. opentrons/hardware_control/protocols/flex_instrument_configurer.py +52 -0
  180. opentrons/hardware_control/protocols/gripper_controller.py +55 -0
  181. opentrons/hardware_control/protocols/hardware_manager.py +51 -0
  182. opentrons/hardware_control/protocols/identifiable.py +16 -0
  183. opentrons/hardware_control/protocols/instrument_configurer.py +206 -0
  184. opentrons/hardware_control/protocols/liquid_handler.py +266 -0
  185. opentrons/hardware_control/protocols/module_provider.py +16 -0
  186. opentrons/hardware_control/protocols/motion_controller.py +243 -0
  187. opentrons/hardware_control/protocols/position_estimator.py +45 -0
  188. opentrons/hardware_control/protocols/simulatable.py +10 -0
  189. opentrons/hardware_control/protocols/stoppable.py +9 -0
  190. opentrons/hardware_control/protocols/types.py +27 -0
  191. opentrons/hardware_control/robot_calibration.py +224 -0
  192. opentrons/hardware_control/scripts/README.md +28 -0
  193. opentrons/hardware_control/scripts/__init__.py +1 -0
  194. opentrons/hardware_control/scripts/gripper_control.py +208 -0
  195. opentrons/hardware_control/scripts/ot3gripper +7 -0
  196. opentrons/hardware_control/scripts/ot3repl +7 -0
  197. opentrons/hardware_control/scripts/repl.py +187 -0
  198. opentrons/hardware_control/scripts/tc_control.py +97 -0
  199. opentrons/hardware_control/simulator_setup.py +260 -0
  200. opentrons/hardware_control/thread_manager.py +431 -0
  201. opentrons/hardware_control/threaded_async_lock.py +97 -0
  202. opentrons/hardware_control/types.py +792 -0
  203. opentrons/hardware_control/util.py +234 -0
  204. opentrons/legacy_broker.py +53 -0
  205. opentrons/legacy_commands/__init__.py +1 -0
  206. opentrons/legacy_commands/commands.py +483 -0
  207. opentrons/legacy_commands/helpers.py +153 -0
  208. opentrons/legacy_commands/module_commands.py +215 -0
  209. opentrons/legacy_commands/protocol_commands.py +54 -0
  210. opentrons/legacy_commands/publisher.py +155 -0
  211. opentrons/legacy_commands/robot_commands.py +51 -0
  212. opentrons/legacy_commands/types.py +1115 -0
  213. opentrons/motion_planning/__init__.py +32 -0
  214. opentrons/motion_planning/adjacent_slots_getters.py +168 -0
  215. opentrons/motion_planning/deck_conflict.py +396 -0
  216. opentrons/motion_planning/errors.py +35 -0
  217. opentrons/motion_planning/types.py +42 -0
  218. opentrons/motion_planning/waypoints.py +218 -0
  219. opentrons/ordered_set.py +138 -0
  220. opentrons/protocol_api/__init__.py +105 -0
  221. opentrons/protocol_api/_liquid.py +157 -0
  222. opentrons/protocol_api/_liquid_properties.py +814 -0
  223. opentrons/protocol_api/_nozzle_layout.py +31 -0
  224. opentrons/protocol_api/_parameter_context.py +300 -0
  225. opentrons/protocol_api/_parameters.py +31 -0
  226. opentrons/protocol_api/_transfer_liquid_validation.py +108 -0
  227. opentrons/protocol_api/_types.py +43 -0
  228. opentrons/protocol_api/config.py +23 -0
  229. opentrons/protocol_api/core/__init__.py +23 -0
  230. opentrons/protocol_api/core/common.py +33 -0
  231. opentrons/protocol_api/core/core_map.py +74 -0
  232. opentrons/protocol_api/core/engine/__init__.py +22 -0
  233. opentrons/protocol_api/core/engine/_default_labware_versions.py +179 -0
  234. opentrons/protocol_api/core/engine/deck_conflict.py +348 -0
  235. opentrons/protocol_api/core/engine/exceptions.py +19 -0
  236. opentrons/protocol_api/core/engine/instrument.py +2391 -0
  237. opentrons/protocol_api/core/engine/labware.py +238 -0
  238. opentrons/protocol_api/core/engine/load_labware_params.py +73 -0
  239. opentrons/protocol_api/core/engine/module_core.py +1025 -0
  240. opentrons/protocol_api/core/engine/overlap_versions.py +20 -0
  241. opentrons/protocol_api/core/engine/pipette_movement_conflict.py +358 -0
  242. opentrons/protocol_api/core/engine/point_calculations.py +64 -0
  243. opentrons/protocol_api/core/engine/protocol.py +1153 -0
  244. opentrons/protocol_api/core/engine/robot.py +139 -0
  245. opentrons/protocol_api/core/engine/stringify.py +74 -0
  246. opentrons/protocol_api/core/engine/transfer_components_executor.py +990 -0
  247. opentrons/protocol_api/core/engine/well.py +241 -0
  248. opentrons/protocol_api/core/instrument.py +459 -0
  249. opentrons/protocol_api/core/labware.py +151 -0
  250. opentrons/protocol_api/core/legacy/__init__.py +11 -0
  251. opentrons/protocol_api/core/legacy/_labware_geometry.py +37 -0
  252. opentrons/protocol_api/core/legacy/deck.py +369 -0
  253. opentrons/protocol_api/core/legacy/labware_offset_provider.py +108 -0
  254. opentrons/protocol_api/core/legacy/legacy_instrument_core.py +709 -0
  255. opentrons/protocol_api/core/legacy/legacy_labware_core.py +235 -0
  256. opentrons/protocol_api/core/legacy/legacy_module_core.py +592 -0
  257. opentrons/protocol_api/core/legacy/legacy_protocol_core.py +612 -0
  258. opentrons/protocol_api/core/legacy/legacy_well_core.py +162 -0
  259. opentrons/protocol_api/core/legacy/load_info.py +67 -0
  260. opentrons/protocol_api/core/legacy/module_geometry.py +547 -0
  261. opentrons/protocol_api/core/legacy/well_geometry.py +148 -0
  262. opentrons/protocol_api/core/legacy_simulator/__init__.py +16 -0
  263. opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py +624 -0
  264. opentrons/protocol_api/core/legacy_simulator/legacy_protocol_core.py +85 -0
  265. opentrons/protocol_api/core/module.py +484 -0
  266. opentrons/protocol_api/core/protocol.py +311 -0
  267. opentrons/protocol_api/core/robot.py +51 -0
  268. opentrons/protocol_api/core/well.py +116 -0
  269. opentrons/protocol_api/core/well_grid.py +45 -0
  270. opentrons/protocol_api/create_protocol_context.py +177 -0
  271. opentrons/protocol_api/deck.py +223 -0
  272. opentrons/protocol_api/disposal_locations.py +244 -0
  273. opentrons/protocol_api/instrument_context.py +3212 -0
  274. opentrons/protocol_api/labware.py +1579 -0
  275. opentrons/protocol_api/module_contexts.py +1425 -0
  276. opentrons/protocol_api/module_validation_and_errors.py +61 -0
  277. opentrons/protocol_api/protocol_context.py +1688 -0
  278. opentrons/protocol_api/robot_context.py +303 -0
  279. opentrons/protocol_api/validation.py +761 -0
  280. opentrons/protocol_engine/__init__.py +155 -0
  281. opentrons/protocol_engine/actions/__init__.py +65 -0
  282. opentrons/protocol_engine/actions/action_dispatcher.py +30 -0
  283. opentrons/protocol_engine/actions/action_handler.py +13 -0
  284. opentrons/protocol_engine/actions/actions.py +302 -0
  285. opentrons/protocol_engine/actions/get_state_update.py +38 -0
  286. opentrons/protocol_engine/clients/__init__.py +5 -0
  287. opentrons/protocol_engine/clients/sync_client.py +174 -0
  288. opentrons/protocol_engine/clients/transports.py +197 -0
  289. opentrons/protocol_engine/commands/__init__.py +757 -0
  290. opentrons/protocol_engine/commands/absorbance_reader/__init__.py +61 -0
  291. opentrons/protocol_engine/commands/absorbance_reader/close_lid.py +154 -0
  292. opentrons/protocol_engine/commands/absorbance_reader/common.py +6 -0
  293. opentrons/protocol_engine/commands/absorbance_reader/initialize.py +151 -0
  294. opentrons/protocol_engine/commands/absorbance_reader/open_lid.py +154 -0
  295. opentrons/protocol_engine/commands/absorbance_reader/read.py +226 -0
  296. opentrons/protocol_engine/commands/air_gap_in_place.py +162 -0
  297. opentrons/protocol_engine/commands/aspirate.py +244 -0
  298. opentrons/protocol_engine/commands/aspirate_in_place.py +184 -0
  299. opentrons/protocol_engine/commands/aspirate_while_tracking.py +211 -0
  300. opentrons/protocol_engine/commands/blow_out.py +146 -0
  301. opentrons/protocol_engine/commands/blow_out_in_place.py +119 -0
  302. opentrons/protocol_engine/commands/calibration/__init__.py +60 -0
  303. opentrons/protocol_engine/commands/calibration/calibrate_gripper.py +166 -0
  304. opentrons/protocol_engine/commands/calibration/calibrate_module.py +117 -0
  305. opentrons/protocol_engine/commands/calibration/calibrate_pipette.py +96 -0
  306. opentrons/protocol_engine/commands/calibration/move_to_maintenance_position.py +156 -0
  307. opentrons/protocol_engine/commands/command.py +308 -0
  308. opentrons/protocol_engine/commands/command_unions.py +974 -0
  309. opentrons/protocol_engine/commands/comment.py +57 -0
  310. opentrons/protocol_engine/commands/configure_for_volume.py +108 -0
  311. opentrons/protocol_engine/commands/configure_nozzle_layout.py +115 -0
  312. opentrons/protocol_engine/commands/custom.py +67 -0
  313. opentrons/protocol_engine/commands/dispense.py +194 -0
  314. opentrons/protocol_engine/commands/dispense_in_place.py +179 -0
  315. opentrons/protocol_engine/commands/dispense_while_tracking.py +204 -0
  316. opentrons/protocol_engine/commands/drop_tip.py +232 -0
  317. opentrons/protocol_engine/commands/drop_tip_in_place.py +205 -0
  318. opentrons/protocol_engine/commands/flex_stacker/__init__.py +64 -0
  319. opentrons/protocol_engine/commands/flex_stacker/common.py +900 -0
  320. opentrons/protocol_engine/commands/flex_stacker/empty.py +293 -0
  321. opentrons/protocol_engine/commands/flex_stacker/fill.py +281 -0
  322. opentrons/protocol_engine/commands/flex_stacker/retrieve.py +339 -0
  323. opentrons/protocol_engine/commands/flex_stacker/set_stored_labware.py +328 -0
  324. opentrons/protocol_engine/commands/flex_stacker/store.py +326 -0
  325. opentrons/protocol_engine/commands/generate_command_schema.py +61 -0
  326. opentrons/protocol_engine/commands/get_next_tip.py +134 -0
  327. opentrons/protocol_engine/commands/get_tip_presence.py +87 -0
  328. opentrons/protocol_engine/commands/hash_command_params.py +38 -0
  329. opentrons/protocol_engine/commands/heater_shaker/__init__.py +102 -0
  330. opentrons/protocol_engine/commands/heater_shaker/close_labware_latch.py +83 -0
  331. opentrons/protocol_engine/commands/heater_shaker/deactivate_heater.py +82 -0
  332. opentrons/protocol_engine/commands/heater_shaker/deactivate_shaker.py +84 -0
  333. opentrons/protocol_engine/commands/heater_shaker/open_labware_latch.py +110 -0
  334. opentrons/protocol_engine/commands/heater_shaker/set_and_wait_for_shake_speed.py +125 -0
  335. opentrons/protocol_engine/commands/heater_shaker/set_target_temperature.py +90 -0
  336. opentrons/protocol_engine/commands/heater_shaker/wait_for_temperature.py +102 -0
  337. opentrons/protocol_engine/commands/home.py +100 -0
  338. opentrons/protocol_engine/commands/identify_module.py +86 -0
  339. opentrons/protocol_engine/commands/labware_handling_common.py +29 -0
  340. opentrons/protocol_engine/commands/liquid_probe.py +464 -0
  341. opentrons/protocol_engine/commands/load_labware.py +210 -0
  342. opentrons/protocol_engine/commands/load_lid.py +154 -0
  343. opentrons/protocol_engine/commands/load_lid_stack.py +272 -0
  344. opentrons/protocol_engine/commands/load_liquid.py +95 -0
  345. opentrons/protocol_engine/commands/load_liquid_class.py +144 -0
  346. opentrons/protocol_engine/commands/load_module.py +223 -0
  347. opentrons/protocol_engine/commands/load_pipette.py +167 -0
  348. opentrons/protocol_engine/commands/magnetic_module/__init__.py +32 -0
  349. opentrons/protocol_engine/commands/magnetic_module/disengage.py +97 -0
  350. opentrons/protocol_engine/commands/magnetic_module/engage.py +119 -0
  351. opentrons/protocol_engine/commands/move_labware.py +546 -0
  352. opentrons/protocol_engine/commands/move_relative.py +102 -0
  353. opentrons/protocol_engine/commands/move_to_addressable_area.py +176 -0
  354. opentrons/protocol_engine/commands/move_to_addressable_area_for_drop_tip.py +198 -0
  355. opentrons/protocol_engine/commands/move_to_coordinates.py +107 -0
  356. opentrons/protocol_engine/commands/move_to_well.py +119 -0
  357. opentrons/protocol_engine/commands/movement_common.py +338 -0
  358. opentrons/protocol_engine/commands/pick_up_tip.py +241 -0
  359. opentrons/protocol_engine/commands/pipetting_common.py +443 -0
  360. opentrons/protocol_engine/commands/prepare_to_aspirate.py +121 -0
  361. opentrons/protocol_engine/commands/pressure_dispense.py +155 -0
  362. opentrons/protocol_engine/commands/reload_labware.py +90 -0
  363. opentrons/protocol_engine/commands/retract_axis.py +75 -0
  364. opentrons/protocol_engine/commands/robot/__init__.py +70 -0
  365. opentrons/protocol_engine/commands/robot/close_gripper_jaw.py +96 -0
  366. opentrons/protocol_engine/commands/robot/common.py +18 -0
  367. opentrons/protocol_engine/commands/robot/move_axes_relative.py +101 -0
  368. opentrons/protocol_engine/commands/robot/move_axes_to.py +100 -0
  369. opentrons/protocol_engine/commands/robot/move_to.py +94 -0
  370. opentrons/protocol_engine/commands/robot/open_gripper_jaw.py +86 -0
  371. opentrons/protocol_engine/commands/save_position.py +109 -0
  372. opentrons/protocol_engine/commands/seal_pipette_to_tip.py +353 -0
  373. opentrons/protocol_engine/commands/set_rail_lights.py +67 -0
  374. opentrons/protocol_engine/commands/set_status_bar.py +89 -0
  375. opentrons/protocol_engine/commands/temperature_module/__init__.py +46 -0
  376. opentrons/protocol_engine/commands/temperature_module/deactivate.py +86 -0
  377. opentrons/protocol_engine/commands/temperature_module/set_target_temperature.py +97 -0
  378. opentrons/protocol_engine/commands/temperature_module/wait_for_temperature.py +104 -0
  379. opentrons/protocol_engine/commands/thermocycler/__init__.py +152 -0
  380. opentrons/protocol_engine/commands/thermocycler/close_lid.py +87 -0
  381. opentrons/protocol_engine/commands/thermocycler/deactivate_block.py +80 -0
  382. opentrons/protocol_engine/commands/thermocycler/deactivate_lid.py +80 -0
  383. opentrons/protocol_engine/commands/thermocycler/open_lid.py +87 -0
  384. opentrons/protocol_engine/commands/thermocycler/run_extended_profile.py +171 -0
  385. opentrons/protocol_engine/commands/thermocycler/run_profile.py +124 -0
  386. opentrons/protocol_engine/commands/thermocycler/set_target_block_temperature.py +140 -0
  387. opentrons/protocol_engine/commands/thermocycler/set_target_lid_temperature.py +100 -0
  388. opentrons/protocol_engine/commands/thermocycler/wait_for_block_temperature.py +93 -0
  389. opentrons/protocol_engine/commands/thermocycler/wait_for_lid_temperature.py +89 -0
  390. opentrons/protocol_engine/commands/touch_tip.py +189 -0
  391. opentrons/protocol_engine/commands/unsafe/__init__.py +161 -0
  392. opentrons/protocol_engine/commands/unsafe/unsafe_blow_out_in_place.py +100 -0
  393. opentrons/protocol_engine/commands/unsafe/unsafe_drop_tip_in_place.py +121 -0
  394. opentrons/protocol_engine/commands/unsafe/unsafe_engage_axes.py +82 -0
  395. opentrons/protocol_engine/commands/unsafe/unsafe_place_labware.py +208 -0
  396. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_close_latch.py +94 -0
  397. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_manual_retrieve.py +295 -0
  398. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_open_latch.py +91 -0
  399. opentrons/protocol_engine/commands/unsafe/unsafe_stacker_prepare_shuttle.py +136 -0
  400. opentrons/protocol_engine/commands/unsafe/unsafe_ungrip_labware.py +77 -0
  401. opentrons/protocol_engine/commands/unsafe/update_position_estimators.py +90 -0
  402. opentrons/protocol_engine/commands/unseal_pipette_from_tip.py +153 -0
  403. opentrons/protocol_engine/commands/verify_tip_presence.py +100 -0
  404. opentrons/protocol_engine/commands/wait_for_duration.py +76 -0
  405. opentrons/protocol_engine/commands/wait_for_resume.py +75 -0
  406. opentrons/protocol_engine/create_protocol_engine.py +193 -0
  407. opentrons/protocol_engine/engine_support.py +28 -0
  408. opentrons/protocol_engine/error_recovery_policy.py +81 -0
  409. opentrons/protocol_engine/errors/__init__.py +191 -0
  410. opentrons/protocol_engine/errors/error_occurrence.py +182 -0
  411. opentrons/protocol_engine/errors/exceptions.py +1308 -0
  412. opentrons/protocol_engine/execution/__init__.py +50 -0
  413. opentrons/protocol_engine/execution/command_executor.py +216 -0
  414. opentrons/protocol_engine/execution/create_queue_worker.py +102 -0
  415. opentrons/protocol_engine/execution/door_watcher.py +119 -0
  416. opentrons/protocol_engine/execution/equipment.py +819 -0
  417. opentrons/protocol_engine/execution/error_recovery_hardware_state_synchronizer.py +101 -0
  418. opentrons/protocol_engine/execution/gantry_mover.py +686 -0
  419. opentrons/protocol_engine/execution/hardware_stopper.py +147 -0
  420. opentrons/protocol_engine/execution/heater_shaker_movement_flagger.py +207 -0
  421. opentrons/protocol_engine/execution/labware_movement.py +297 -0
  422. opentrons/protocol_engine/execution/movement.py +349 -0
  423. opentrons/protocol_engine/execution/pipetting.py +607 -0
  424. opentrons/protocol_engine/execution/queue_worker.py +86 -0
  425. opentrons/protocol_engine/execution/rail_lights.py +25 -0
  426. opentrons/protocol_engine/execution/run_control.py +33 -0
  427. opentrons/protocol_engine/execution/status_bar.py +34 -0
  428. opentrons/protocol_engine/execution/thermocycler_movement_flagger.py +188 -0
  429. opentrons/protocol_engine/execution/thermocycler_plate_lifter.py +81 -0
  430. opentrons/protocol_engine/execution/tip_handler.py +550 -0
  431. opentrons/protocol_engine/labware_offset_standardization.py +194 -0
  432. opentrons/protocol_engine/notes/__init__.py +17 -0
  433. opentrons/protocol_engine/notes/notes.py +59 -0
  434. opentrons/protocol_engine/plugins.py +104 -0
  435. opentrons/protocol_engine/protocol_engine.py +683 -0
  436. opentrons/protocol_engine/resources/__init__.py +26 -0
  437. opentrons/protocol_engine/resources/deck_configuration_provider.py +232 -0
  438. opentrons/protocol_engine/resources/deck_data_provider.py +94 -0
  439. opentrons/protocol_engine/resources/file_provider.py +161 -0
  440. opentrons/protocol_engine/resources/fixture_validation.py +58 -0
  441. opentrons/protocol_engine/resources/labware_data_provider.py +106 -0
  442. opentrons/protocol_engine/resources/labware_validation.py +73 -0
  443. opentrons/protocol_engine/resources/model_utils.py +32 -0
  444. opentrons/protocol_engine/resources/module_data_provider.py +44 -0
  445. opentrons/protocol_engine/resources/ot3_validation.py +21 -0
  446. opentrons/protocol_engine/resources/pipette_data_provider.py +379 -0
  447. opentrons/protocol_engine/slot_standardization.py +128 -0
  448. opentrons/protocol_engine/state/__init__.py +1 -0
  449. opentrons/protocol_engine/state/_abstract_store.py +27 -0
  450. opentrons/protocol_engine/state/_axis_aligned_bounding_box.py +50 -0
  451. opentrons/protocol_engine/state/_labware_origin_math.py +636 -0
  452. opentrons/protocol_engine/state/_move_types.py +83 -0
  453. opentrons/protocol_engine/state/_well_math.py +193 -0
  454. opentrons/protocol_engine/state/addressable_areas.py +699 -0
  455. opentrons/protocol_engine/state/command_history.py +309 -0
  456. opentrons/protocol_engine/state/commands.py +1158 -0
  457. opentrons/protocol_engine/state/config.py +39 -0
  458. opentrons/protocol_engine/state/files.py +57 -0
  459. opentrons/protocol_engine/state/fluid_stack.py +138 -0
  460. opentrons/protocol_engine/state/geometry.py +2359 -0
  461. opentrons/protocol_engine/state/inner_well_math_utils.py +548 -0
  462. opentrons/protocol_engine/state/labware.py +1459 -0
  463. opentrons/protocol_engine/state/liquid_classes.py +82 -0
  464. opentrons/protocol_engine/state/liquids.py +73 -0
  465. opentrons/protocol_engine/state/module_substates/__init__.py +45 -0
  466. opentrons/protocol_engine/state/module_substates/absorbance_reader_substate.py +35 -0
  467. opentrons/protocol_engine/state/module_substates/flex_stacker_substate.py +112 -0
  468. opentrons/protocol_engine/state/module_substates/heater_shaker_module_substate.py +115 -0
  469. opentrons/protocol_engine/state/module_substates/magnetic_block_substate.py +17 -0
  470. opentrons/protocol_engine/state/module_substates/magnetic_module_substate.py +65 -0
  471. opentrons/protocol_engine/state/module_substates/temperature_module_substate.py +67 -0
  472. opentrons/protocol_engine/state/module_substates/thermocycler_module_substate.py +163 -0
  473. opentrons/protocol_engine/state/modules.py +1500 -0
  474. opentrons/protocol_engine/state/motion.py +373 -0
  475. opentrons/protocol_engine/state/pipettes.py +905 -0
  476. opentrons/protocol_engine/state/state.py +421 -0
  477. opentrons/protocol_engine/state/state_summary.py +36 -0
  478. opentrons/protocol_engine/state/tips.py +420 -0
  479. opentrons/protocol_engine/state/update_types.py +904 -0
  480. opentrons/protocol_engine/state/wells.py +290 -0
  481. opentrons/protocol_engine/types/__init__.py +308 -0
  482. opentrons/protocol_engine/types/automatic_tip_selection.py +39 -0
  483. opentrons/protocol_engine/types/command_annotations.py +53 -0
  484. opentrons/protocol_engine/types/deck_configuration.py +81 -0
  485. opentrons/protocol_engine/types/execution.py +96 -0
  486. opentrons/protocol_engine/types/hardware_passthrough.py +25 -0
  487. opentrons/protocol_engine/types/instrument.py +47 -0
  488. opentrons/protocol_engine/types/instrument_sensors.py +47 -0
  489. opentrons/protocol_engine/types/labware.py +131 -0
  490. opentrons/protocol_engine/types/labware_movement.py +22 -0
  491. opentrons/protocol_engine/types/labware_offset_location.py +111 -0
  492. opentrons/protocol_engine/types/labware_offset_vector.py +16 -0
  493. opentrons/protocol_engine/types/liquid.py +40 -0
  494. opentrons/protocol_engine/types/liquid_class.py +59 -0
  495. opentrons/protocol_engine/types/liquid_handling.py +13 -0
  496. opentrons/protocol_engine/types/liquid_level_detection.py +191 -0
  497. opentrons/protocol_engine/types/location.py +194 -0
  498. opentrons/protocol_engine/types/module.py +303 -0
  499. opentrons/protocol_engine/types/partial_tip_configuration.py +76 -0
  500. opentrons/protocol_engine/types/run_time_parameters.py +133 -0
  501. opentrons/protocol_engine/types/tip.py +18 -0
  502. opentrons/protocol_engine/types/util.py +21 -0
  503. opentrons/protocol_engine/types/well_position.py +124 -0
  504. opentrons/protocol_reader/__init__.py +37 -0
  505. opentrons/protocol_reader/extract_labware_definitions.py +66 -0
  506. opentrons/protocol_reader/file_format_validator.py +152 -0
  507. opentrons/protocol_reader/file_hasher.py +27 -0
  508. opentrons/protocol_reader/file_identifier.py +284 -0
  509. opentrons/protocol_reader/file_reader_writer.py +90 -0
  510. opentrons/protocol_reader/input_file.py +16 -0
  511. opentrons/protocol_reader/protocol_files_invalid_error.py +6 -0
  512. opentrons/protocol_reader/protocol_reader.py +188 -0
  513. opentrons/protocol_reader/protocol_source.py +124 -0
  514. opentrons/protocol_reader/role_analyzer.py +86 -0
  515. opentrons/protocol_runner/__init__.py +26 -0
  516. opentrons/protocol_runner/create_simulating_orchestrator.py +118 -0
  517. opentrons/protocol_runner/json_file_reader.py +55 -0
  518. opentrons/protocol_runner/json_translator.py +314 -0
  519. opentrons/protocol_runner/legacy_command_mapper.py +848 -0
  520. opentrons/protocol_runner/legacy_context_plugin.py +116 -0
  521. opentrons/protocol_runner/protocol_runner.py +530 -0
  522. opentrons/protocol_runner/python_protocol_wrappers.py +179 -0
  523. opentrons/protocol_runner/run_orchestrator.py +496 -0
  524. opentrons/protocol_runner/task_queue.py +95 -0
  525. opentrons/protocols/__init__.py +6 -0
  526. opentrons/protocols/advanced_control/__init__.py +0 -0
  527. opentrons/protocols/advanced_control/common.py +38 -0
  528. opentrons/protocols/advanced_control/mix.py +60 -0
  529. opentrons/protocols/advanced_control/transfers/__init__.py +0 -0
  530. opentrons/protocols/advanced_control/transfers/common.py +180 -0
  531. opentrons/protocols/advanced_control/transfers/transfer.py +972 -0
  532. opentrons/protocols/advanced_control/transfers/transfer_liquid_utils.py +231 -0
  533. opentrons/protocols/api_support/__init__.py +0 -0
  534. opentrons/protocols/api_support/constants.py +8 -0
  535. opentrons/protocols/api_support/deck_type.py +110 -0
  536. opentrons/protocols/api_support/definitions.py +18 -0
  537. opentrons/protocols/api_support/instrument.py +151 -0
  538. opentrons/protocols/api_support/labware_like.py +233 -0
  539. opentrons/protocols/api_support/tip_tracker.py +175 -0
  540. opentrons/protocols/api_support/types.py +32 -0
  541. opentrons/protocols/api_support/util.py +403 -0
  542. opentrons/protocols/bundle.py +89 -0
  543. opentrons/protocols/duration/__init__.py +4 -0
  544. opentrons/protocols/duration/errors.py +5 -0
  545. opentrons/protocols/duration/estimator.py +628 -0
  546. opentrons/protocols/execution/__init__.py +0 -0
  547. opentrons/protocols/execution/dev_types.py +181 -0
  548. opentrons/protocols/execution/errors.py +40 -0
  549. opentrons/protocols/execution/execute.py +84 -0
  550. opentrons/protocols/execution/execute_json_v3.py +275 -0
  551. opentrons/protocols/execution/execute_json_v4.py +359 -0
  552. opentrons/protocols/execution/execute_json_v5.py +28 -0
  553. opentrons/protocols/execution/execute_python.py +169 -0
  554. opentrons/protocols/execution/json_dispatchers.py +87 -0
  555. opentrons/protocols/execution/types.py +7 -0
  556. opentrons/protocols/geometry/__init__.py +0 -0
  557. opentrons/protocols/geometry/planning.py +297 -0
  558. opentrons/protocols/labware.py +312 -0
  559. opentrons/protocols/models/__init__.py +0 -0
  560. opentrons/protocols/models/json_protocol.py +679 -0
  561. opentrons/protocols/parameters/__init__.py +0 -0
  562. opentrons/protocols/parameters/csv_parameter_definition.py +77 -0
  563. opentrons/protocols/parameters/csv_parameter_interface.py +96 -0
  564. opentrons/protocols/parameters/exceptions.py +34 -0
  565. opentrons/protocols/parameters/parameter_definition.py +272 -0
  566. opentrons/protocols/parameters/types.py +17 -0
  567. opentrons/protocols/parameters/validation.py +267 -0
  568. opentrons/protocols/parse.py +671 -0
  569. opentrons/protocols/types.py +159 -0
  570. opentrons/py.typed +0 -0
  571. opentrons/resources/scripts/lpc21isp +0 -0
  572. opentrons/resources/smoothie-edge-8414642.hex +23010 -0
  573. opentrons/simulate.py +1065 -0
  574. opentrons/system/__init__.py +6 -0
  575. opentrons/system/camera.py +51 -0
  576. opentrons/system/log_control.py +59 -0
  577. opentrons/system/nmcli.py +856 -0
  578. opentrons/system/resin.py +24 -0
  579. opentrons/system/smoothie_update.py +15 -0
  580. opentrons/system/wifi.py +204 -0
  581. opentrons/tools/__init__.py +0 -0
  582. opentrons/tools/args_handler.py +22 -0
  583. opentrons/tools/write_pipette_memory.py +157 -0
  584. opentrons/types.py +618 -0
  585. opentrons/util/__init__.py +1 -0
  586. opentrons/util/async_helpers.py +166 -0
  587. opentrons/util/broker.py +84 -0
  588. opentrons/util/change_notifier.py +47 -0
  589. opentrons/util/entrypoint_util.py +278 -0
  590. opentrons/util/get_union_elements.py +26 -0
  591. opentrons/util/helpers.py +6 -0
  592. opentrons/util/linal.py +178 -0
  593. opentrons/util/logging_config.py +265 -0
  594. opentrons/util/logging_queue_handler.py +61 -0
  595. opentrons/util/performance_helpers.py +157 -0
  596. opentrons-8.6.0a1.dist-info/METADATA +37 -0
  597. opentrons-8.6.0a1.dist-info/RECORD +600 -0
  598. opentrons-8.6.0a1.dist-info/WHEEL +4 -0
  599. opentrons-8.6.0a1.dist-info/entry_points.txt +3 -0
  600. opentrons-8.6.0a1.dist-info/licenses/LICENSE +202 -0
@@ -0,0 +1,303 @@
1
+ from typing import NamedTuple, Union, Optional
2
+
3
+ from opentrons.types import (
4
+ Mount,
5
+ DeckLocation,
6
+ Location,
7
+ Point,
8
+ AxisMapType,
9
+ AxisType,
10
+ StringAxisMap,
11
+ )
12
+ from opentrons.legacy_broker import LegacyBroker
13
+ from opentrons.legacy_commands import robot_commands as cmds
14
+ from opentrons.legacy_commands import publisher
15
+ from opentrons.hardware_control import SyncHardwareAPI
16
+ from opentrons.protocols.api_support.util import requires_version
17
+ from opentrons.protocols.api_support.types import APIVersion
18
+ from opentrons_shared_data.pipette.types import PipetteNameType
19
+
20
+ from . import validation
21
+ from .core.common import ProtocolCore, RobotCore
22
+ from .module_contexts import ModuleContext
23
+ from .labware import Labware
24
+ from ._types import PipetteActionTypes, PlungerPositionTypes
25
+
26
+
27
+ class HardwareManager(NamedTuple):
28
+ """Back. compat. wrapper for a removed class called `HardwareManager`.
29
+
30
+ This interface will not be present in PAPIv3.
31
+ """
32
+
33
+ hardware: SyncHardwareAPI
34
+
35
+
36
+ class RobotContext(publisher.CommandPublisher):
37
+ """
38
+ A context for the movement system of the robot.
39
+
40
+ The RobotContext class provides the objects, attributes, and methods that allow
41
+ you to control robot motor axes individually.
42
+
43
+ Its methods can command the robot to perform an action, like moving to an absolute position,
44
+ controlling the gripper jaw, or moving individual pipette motors.
45
+
46
+ Objects in this class should not be instantiated directly. Instead, instances are
47
+ returned by :py:meth:`ProtocolContext.robot`.
48
+
49
+ .. versionadded:: 2.20
50
+
51
+ """
52
+
53
+ def __init__(
54
+ self,
55
+ core: RobotCore,
56
+ protocol_core: ProtocolCore,
57
+ api_version: APIVersion,
58
+ broker: Optional[LegacyBroker] = None,
59
+ ) -> None:
60
+ super().__init__(broker)
61
+ self._hardware = HardwareManager(hardware=protocol_core.get_hardware())
62
+ self._core = core
63
+ self._protocol_core = protocol_core
64
+ self._api_version = api_version
65
+
66
+ @property
67
+ @requires_version(2, 22)
68
+ def api_version(self) -> APIVersion:
69
+ return self._api_version
70
+
71
+ @property
72
+ def hardware(self) -> HardwareManager:
73
+ # TODO this hardware attribute should be deprecated
74
+ # in version 3.0+ as we will only support exposed robot
75
+ # context commands.
76
+ return self._hardware
77
+
78
+ @requires_version(2, 22)
79
+ def move_to(
80
+ self,
81
+ mount: Union[Mount, str],
82
+ destination: Location,
83
+ speed: Optional[float] = None,
84
+ ) -> None:
85
+ """
86
+ Move a specified mount to a destination location on the deck.
87
+
88
+ :param mount: The mount of the instrument you wish to move.
89
+ This can either be an instance of :py:class:`.types.Mount` or one
90
+ of the strings ``"left"``, ``"right"``, ``"extension"``, ``"gripper"``. Note
91
+ that the gripper mount can be referred to either as ``"extension"`` or ``"gripper"``.
92
+ :type mount: types.Mount or str
93
+ :param Location destination:
94
+ :param speed:
95
+ """
96
+ mount = validation.ensure_instrument_mount(mount)
97
+ with publisher.publish_context(
98
+ broker=self.broker,
99
+ command=cmds.move_to(
100
+ # This needs to be called from protocol context and not the command for import loop reasons
101
+ mount=mount,
102
+ location=destination,
103
+ speed=speed,
104
+ ),
105
+ ):
106
+ self._core.move_to(mount, destination.point, speed)
107
+
108
+ @requires_version(2, 22)
109
+ def move_axes_to(
110
+ self,
111
+ axis_map: Union[AxisMapType, StringAxisMap],
112
+ critical_point: Optional[Union[AxisMapType, StringAxisMap]] = None,
113
+ speed: Optional[float] = None,
114
+ ) -> None:
115
+ """
116
+ Move a set of axes to an absolute position on the deck.
117
+
118
+ :param axis_map: A dictionary mapping axes to an absolute position on the deck in mm.
119
+ :param critical_point: The critical point to move the axes with. It should only
120
+ specify the gantry axes (i.e. `x`, `y`, `z`).
121
+ :param float speed: The maximum speed with which you want to move all the axes
122
+ in the axis map.
123
+ """
124
+ instrument_on_left = self._core.get_pipette_type_from_engine(Mount.LEFT)
125
+ is_96_channel = instrument_on_left == PipetteNameType.P1000_96
126
+ axis_map = validation.ensure_axis_map_type(
127
+ axis_map, self._protocol_core.robot_type, is_96_channel
128
+ )
129
+ if critical_point:
130
+ critical_point = validation.ensure_axis_map_type(
131
+ critical_point, self._protocol_core.robot_type, is_96_channel
132
+ )
133
+ validation.ensure_only_gantry_axis_map_type(
134
+ critical_point, self._protocol_core.robot_type
135
+ )
136
+ else:
137
+ critical_point = None
138
+ with publisher.publish_context(
139
+ broker=self.broker,
140
+ command=cmds.move_axis_to(
141
+ # This needs to be called from protocol context and not the command for import loop reasons
142
+ axis_map=axis_map,
143
+ speed=speed,
144
+ ),
145
+ ):
146
+ self._core.move_axes_to(axis_map, critical_point, speed)
147
+
148
+ @requires_version(2, 22)
149
+ def move_axes_relative(
150
+ self,
151
+ axis_map: Union[AxisMapType, StringAxisMap],
152
+ speed: Optional[float] = None,
153
+ ) -> None:
154
+ """
155
+ Move a set of axes to a relative position on the deck.
156
+
157
+ :param axis_map: A dictionary mapping axes to relative movements in mm.
158
+ :type mount: types.Mount or str
159
+
160
+ :param float speed: The maximum speed with which you want to move all the axes
161
+ in the axis map.
162
+ """
163
+ instrument_on_left = self._core.get_pipette_type_from_engine(Mount.LEFT)
164
+ is_96_channel = instrument_on_left == PipetteNameType.P1000_96
165
+
166
+ axis_map = validation.ensure_axis_map_type(
167
+ axis_map, self._protocol_core.robot_type, is_96_channel
168
+ )
169
+ with publisher.publish_context(
170
+ broker=self.broker,
171
+ command=cmds.move_axis_relative(
172
+ # This needs to be called from protocol context and not the command for import loop reasons
173
+ axis_map=axis_map,
174
+ speed=speed,
175
+ ),
176
+ ):
177
+ self._core.move_axes_relative(axis_map, speed)
178
+
179
+ def close_gripper_jaw(self, force: Optional[float] = None) -> None:
180
+ """Command the gripper closed with some force."""
181
+ with publisher.publish_context(
182
+ broker=self.broker,
183
+ command=cmds.close_gripper(
184
+ force=force,
185
+ ),
186
+ ):
187
+ self._core.close_gripper(force)
188
+
189
+ def open_gripper_jaw(self) -> None:
190
+ """Command the gripper open."""
191
+ with publisher.publish_context(
192
+ broker=self.broker,
193
+ command=cmds.open_gripper(),
194
+ ):
195
+ self._core.release_grip()
196
+
197
+ def axis_coordinates_for(
198
+ self,
199
+ mount: Union[Mount, str],
200
+ location: Union[Location, ModuleContext, DeckLocation],
201
+ ) -> AxisMapType:
202
+ """
203
+ Build a :py:class:`.types.AxisMapType` from a location to be compatible with
204
+ either :py:meth:`.RobotContext.move_axes_to` or :py:meth:`.RobotContext.move_axes_relative`.
205
+ You must provide only one of `location`, `slot`, or `module` to build
206
+ the axis map.
207
+
208
+ :param mount: The mount of the instrument you wish create an axis map for.
209
+ This can either be an instance of :py:class:`.types.Mount` or one
210
+ of the strings ``"left"``, ``"right"``, ``"extension"``, ``"gripper"``. Note
211
+ that the gripper mount can be referred to either as ``"extension"`` or ``"gripper"``.
212
+ :type mount: types.Mount or str
213
+ :param location: The location to format an axis map for.
214
+ :type location: `Well`, `ModuleContext`, `DeckLocation` or `OffDeckType`
215
+ """
216
+ mount = validation.ensure_instrument_mount(mount)
217
+
218
+ mount_axis = AxisType.axis_for_mount(mount)
219
+ if location:
220
+ loc: Union[Point, Labware, None]
221
+ if isinstance(location, ModuleContext):
222
+ loc = location.labware
223
+ if not loc:
224
+ raise ValueError(f"There must be a labware on {location}")
225
+ top_of_labware = loc.wells()[0].top()
226
+ loc = top_of_labware.point
227
+ return {mount_axis: loc.z, AxisType.X: loc.x, AxisType.Y: loc.y}
228
+ elif location is DeckLocation and not isinstance(location, Location):
229
+ slot_name = validation.ensure_and_convert_deck_slot(
230
+ location,
231
+ api_version=self._api_version,
232
+ robot_type=self._protocol_core.robot_type,
233
+ )
234
+ loc = self._protocol_core.get_slot_center(slot_name)
235
+ return {mount_axis: loc.z, AxisType.X: loc.x, AxisType.Y: loc.y}
236
+ elif isinstance(location, Location):
237
+ assert isinstance(location, Location)
238
+ loc = location.point
239
+ return {mount_axis: loc.z, AxisType.X: loc.x, AxisType.Y: loc.y}
240
+ else:
241
+ raise ValueError(
242
+ "Location parameter must be a Module, Deck Location, or Location type."
243
+ )
244
+ else:
245
+ raise TypeError("You must specify a location to move to.")
246
+
247
+ def plunger_coordinates_for_volume(
248
+ self, mount: Union[Mount, str], volume: float, action: PipetteActionTypes
249
+ ) -> AxisMapType:
250
+ """
251
+ Build a :py:class:`.types.AxisMapType` for a pipette plunger motor from volume.
252
+
253
+ """
254
+ pipette_name = self._core.get_pipette_type_from_engine(mount)
255
+ if not pipette_name:
256
+ raise ValueError(
257
+ f"Expected a pipette to be attached to provided mount {mount}"
258
+ )
259
+ mount = validation.ensure_mount_for_pipette(mount, pipette_name)
260
+ pipette_axis = AxisType.plunger_axis_for_mount(mount)
261
+
262
+ pipette_position = self._core.get_plunger_position_from_volume(
263
+ mount, volume, action, self._protocol_core.robot_type
264
+ )
265
+ return {pipette_axis: pipette_position}
266
+
267
+ def plunger_coordinates_for_named_position(
268
+ self, mount: Union[Mount, str], position_name: PlungerPositionTypes
269
+ ) -> AxisMapType:
270
+ """
271
+ Build a :py:class:`.types.AxisMapType` for a pipette plunger motor from position_name.
272
+
273
+ """
274
+ pipette_name = self._core.get_pipette_type_from_engine(mount)
275
+ if not pipette_name:
276
+ raise ValueError(
277
+ f"Expected a pipette to be attached to provided mount {mount}"
278
+ )
279
+ mount = validation.ensure_mount_for_pipette(mount, pipette_name)
280
+ pipette_axis = AxisType.plunger_axis_for_mount(mount)
281
+ pipette_position = self._core.get_plunger_position_from_name(
282
+ mount, position_name
283
+ )
284
+ return {pipette_axis: pipette_position}
285
+
286
+ def build_axis_map(self, axis_map: StringAxisMap) -> AxisMapType:
287
+ """Take in a :py:class:`.types.StringAxisMap` and output a :py:class:`.types.AxisMapType`.
288
+ A :py:class:`.types.StringAxisMap` is allowed to contain any of the following strings:
289
+ ``"x"``, ``"y"``, "``z_l"``, "``z_r"``, "``z_g"``, ``"q"``.
290
+
291
+ An example of a valid axis map could be:
292
+
293
+ {"x": 1, "y": 2} or {"Z_L": 100}
294
+
295
+ Note that capitalization does not matter.
296
+
297
+ """
298
+ instrument_on_left = self._core.get_pipette_type_from_engine(Mount.LEFT)
299
+ is_96_channel = instrument_on_left == PipetteNameType.P1000_96
300
+
301
+ return validation.ensure_axis_map_type(
302
+ axis_map, self._protocol_core.robot_type, is_96_channel
303
+ )