opentrons 8.3.2__py2.py3-none-any.whl → 8.4.0__py2.py3-none-any.whl

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Files changed (196) hide show
  1. opentrons/calibration_storage/ot2/mark_bad_calibration.py +2 -0
  2. opentrons/calibration_storage/ot2/tip_length.py +6 -6
  3. opentrons/config/advanced_settings.py +9 -11
  4. opentrons/config/feature_flags.py +0 -4
  5. opentrons/config/reset.py +7 -2
  6. opentrons/drivers/asyncio/communication/__init__.py +2 -0
  7. opentrons/drivers/asyncio/communication/async_serial.py +4 -0
  8. opentrons/drivers/asyncio/communication/errors.py +41 -8
  9. opentrons/drivers/asyncio/communication/serial_connection.py +36 -10
  10. opentrons/drivers/flex_stacker/__init__.py +9 -3
  11. opentrons/drivers/flex_stacker/abstract.py +140 -15
  12. opentrons/drivers/flex_stacker/driver.py +593 -47
  13. opentrons/drivers/flex_stacker/errors.py +64 -0
  14. opentrons/drivers/flex_stacker/simulator.py +222 -24
  15. opentrons/drivers/flex_stacker/types.py +211 -15
  16. opentrons/drivers/flex_stacker/utils.py +19 -0
  17. opentrons/execute.py +4 -2
  18. opentrons/hardware_control/api.py +5 -0
  19. opentrons/hardware_control/backends/flex_protocol.py +4 -0
  20. opentrons/hardware_control/backends/ot3controller.py +12 -1
  21. opentrons/hardware_control/backends/ot3simulator.py +3 -0
  22. opentrons/hardware_control/backends/subsystem_manager.py +8 -4
  23. opentrons/hardware_control/instruments/ot2/instrument_calibration.py +10 -6
  24. opentrons/hardware_control/instruments/ot3/pipette_handler.py +59 -6
  25. opentrons/hardware_control/modules/__init__.py +12 -1
  26. opentrons/hardware_control/modules/absorbance_reader.py +11 -9
  27. opentrons/hardware_control/modules/flex_stacker.py +498 -0
  28. opentrons/hardware_control/modules/heater_shaker.py +12 -10
  29. opentrons/hardware_control/modules/magdeck.py +5 -1
  30. opentrons/hardware_control/modules/tempdeck.py +5 -1
  31. opentrons/hardware_control/modules/thermocycler.py +15 -14
  32. opentrons/hardware_control/modules/types.py +191 -1
  33. opentrons/hardware_control/modules/utils.py +3 -0
  34. opentrons/hardware_control/motion_utilities.py +20 -0
  35. opentrons/hardware_control/ot3api.py +145 -15
  36. opentrons/hardware_control/protocols/liquid_handler.py +47 -1
  37. opentrons/hardware_control/types.py +6 -0
  38. opentrons/legacy_commands/commands.py +102 -5
  39. opentrons/legacy_commands/helpers.py +74 -1
  40. opentrons/legacy_commands/types.py +33 -2
  41. opentrons/protocol_api/__init__.py +2 -0
  42. opentrons/protocol_api/_liquid.py +39 -8
  43. opentrons/protocol_api/_liquid_properties.py +20 -19
  44. opentrons/protocol_api/_transfer_liquid_validation.py +91 -0
  45. opentrons/protocol_api/core/common.py +3 -1
  46. opentrons/protocol_api/core/engine/deck_conflict.py +11 -1
  47. opentrons/protocol_api/core/engine/instrument.py +1356 -107
  48. opentrons/protocol_api/core/engine/labware.py +8 -4
  49. opentrons/protocol_api/core/engine/load_labware_params.py +68 -10
  50. opentrons/protocol_api/core/engine/module_core.py +118 -2
  51. opentrons/protocol_api/core/engine/pipette_movement_conflict.py +6 -14
  52. opentrons/protocol_api/core/engine/protocol.py +253 -11
  53. opentrons/protocol_api/core/engine/stringify.py +19 -8
  54. opentrons/protocol_api/core/engine/transfer_components_executor.py +858 -0
  55. opentrons/protocol_api/core/engine/well.py +73 -5
  56. opentrons/protocol_api/core/instrument.py +71 -21
  57. opentrons/protocol_api/core/labware.py +6 -2
  58. opentrons/protocol_api/core/legacy/labware_offset_provider.py +7 -3
  59. opentrons/protocol_api/core/legacy/legacy_instrument_core.py +76 -49
  60. opentrons/protocol_api/core/legacy/legacy_labware_core.py +8 -4
  61. opentrons/protocol_api/core/legacy/legacy_protocol_core.py +36 -0
  62. opentrons/protocol_api/core/legacy/legacy_well_core.py +27 -2
  63. opentrons/protocol_api/core/legacy/load_info.py +4 -12
  64. opentrons/protocol_api/core/legacy/module_geometry.py +6 -1
  65. opentrons/protocol_api/core/legacy/well_geometry.py +3 -3
  66. opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py +73 -23
  67. opentrons/protocol_api/core/module.py +43 -0
  68. opentrons/protocol_api/core/protocol.py +33 -0
  69. opentrons/protocol_api/core/well.py +23 -2
  70. opentrons/protocol_api/instrument_context.py +454 -150
  71. opentrons/protocol_api/labware.py +98 -50
  72. opentrons/protocol_api/module_contexts.py +140 -0
  73. opentrons/protocol_api/protocol_context.py +163 -19
  74. opentrons/protocol_api/validation.py +51 -41
  75. opentrons/protocol_engine/__init__.py +21 -2
  76. opentrons/protocol_engine/actions/actions.py +5 -5
  77. opentrons/protocol_engine/clients/sync_client.py +6 -0
  78. opentrons/protocol_engine/commands/__init__.py +66 -36
  79. opentrons/protocol_engine/commands/absorbance_reader/__init__.py +0 -1
  80. opentrons/protocol_engine/commands/air_gap_in_place.py +3 -2
  81. opentrons/protocol_engine/commands/aspirate.py +6 -2
  82. opentrons/protocol_engine/commands/aspirate_in_place.py +3 -1
  83. opentrons/protocol_engine/commands/aspirate_while_tracking.py +210 -0
  84. opentrons/protocol_engine/commands/blow_out.py +2 -0
  85. opentrons/protocol_engine/commands/blow_out_in_place.py +4 -1
  86. opentrons/protocol_engine/commands/command_unions.py +102 -33
  87. opentrons/protocol_engine/commands/configure_for_volume.py +3 -0
  88. opentrons/protocol_engine/commands/dispense.py +3 -1
  89. opentrons/protocol_engine/commands/dispense_in_place.py +3 -0
  90. opentrons/protocol_engine/commands/dispense_while_tracking.py +204 -0
  91. opentrons/protocol_engine/commands/drop_tip.py +23 -1
  92. opentrons/protocol_engine/commands/flex_stacker/__init__.py +106 -0
  93. opentrons/protocol_engine/commands/flex_stacker/close_latch.py +72 -0
  94. opentrons/protocol_engine/commands/flex_stacker/common.py +15 -0
  95. opentrons/protocol_engine/commands/flex_stacker/empty.py +161 -0
  96. opentrons/protocol_engine/commands/flex_stacker/fill.py +164 -0
  97. opentrons/protocol_engine/commands/flex_stacker/open_latch.py +70 -0
  98. opentrons/protocol_engine/commands/flex_stacker/prepare_shuttle.py +112 -0
  99. opentrons/protocol_engine/commands/flex_stacker/retrieve.py +394 -0
  100. opentrons/protocol_engine/commands/flex_stacker/set_stored_labware.py +190 -0
  101. opentrons/protocol_engine/commands/flex_stacker/store.py +291 -0
  102. opentrons/protocol_engine/commands/generate_command_schema.py +31 -2
  103. opentrons/protocol_engine/commands/labware_handling_common.py +29 -0
  104. opentrons/protocol_engine/commands/liquid_probe.py +27 -13
  105. opentrons/protocol_engine/commands/load_labware.py +42 -39
  106. opentrons/protocol_engine/commands/load_lid.py +21 -13
  107. opentrons/protocol_engine/commands/load_lid_stack.py +130 -47
  108. opentrons/protocol_engine/commands/load_module.py +18 -17
  109. opentrons/protocol_engine/commands/load_pipette.py +3 -0
  110. opentrons/protocol_engine/commands/move_labware.py +139 -20
  111. opentrons/protocol_engine/commands/move_to_well.py +5 -11
  112. opentrons/protocol_engine/commands/pick_up_tip.py +5 -2
  113. opentrons/protocol_engine/commands/pipetting_common.py +159 -8
  114. opentrons/protocol_engine/commands/prepare_to_aspirate.py +15 -5
  115. opentrons/protocol_engine/commands/{evotip_dispense.py → pressure_dispense.py} +33 -34
  116. opentrons/protocol_engine/commands/reload_labware.py +6 -19
  117. opentrons/protocol_engine/commands/{evotip_seal_pipette.py → seal_pipette_to_tip.py} +97 -76
  118. opentrons/protocol_engine/commands/unsafe/unsafe_blow_out_in_place.py +3 -1
  119. opentrons/protocol_engine/commands/unsafe/unsafe_drop_tip_in_place.py +6 -1
  120. opentrons/protocol_engine/commands/{evotip_unseal_pipette.py → unseal_pipette_from_tip.py} +31 -40
  121. opentrons/protocol_engine/errors/__init__.py +10 -0
  122. opentrons/protocol_engine/errors/exceptions.py +62 -0
  123. opentrons/protocol_engine/execution/equipment.py +123 -106
  124. opentrons/protocol_engine/execution/labware_movement.py +8 -6
  125. opentrons/protocol_engine/execution/pipetting.py +235 -25
  126. opentrons/protocol_engine/execution/tip_handler.py +82 -32
  127. opentrons/protocol_engine/labware_offset_standardization.py +194 -0
  128. opentrons/protocol_engine/protocol_engine.py +22 -13
  129. opentrons/protocol_engine/resources/deck_configuration_provider.py +98 -2
  130. opentrons/protocol_engine/resources/deck_data_provider.py +1 -1
  131. opentrons/protocol_engine/resources/labware_data_provider.py +32 -12
  132. opentrons/protocol_engine/resources/labware_validation.py +7 -5
  133. opentrons/protocol_engine/slot_standardization.py +11 -23
  134. opentrons/protocol_engine/state/addressable_areas.py +84 -46
  135. opentrons/protocol_engine/state/frustum_helpers.py +36 -14
  136. opentrons/protocol_engine/state/geometry.py +892 -227
  137. opentrons/protocol_engine/state/labware.py +252 -55
  138. opentrons/protocol_engine/state/module_substates/__init__.py +4 -0
  139. opentrons/protocol_engine/state/module_substates/flex_stacker_substate.py +68 -0
  140. opentrons/protocol_engine/state/module_substates/heater_shaker_module_substate.py +22 -0
  141. opentrons/protocol_engine/state/module_substates/temperature_module_substate.py +13 -0
  142. opentrons/protocol_engine/state/module_substates/thermocycler_module_substate.py +20 -0
  143. opentrons/protocol_engine/state/modules.py +210 -67
  144. opentrons/protocol_engine/state/pipettes.py +54 -0
  145. opentrons/protocol_engine/state/state.py +1 -1
  146. opentrons/protocol_engine/state/tips.py +14 -0
  147. opentrons/protocol_engine/state/update_types.py +180 -25
  148. opentrons/protocol_engine/state/wells.py +55 -9
  149. opentrons/protocol_engine/types/__init__.py +300 -0
  150. opentrons/protocol_engine/types/automatic_tip_selection.py +39 -0
  151. opentrons/protocol_engine/types/command_annotations.py +53 -0
  152. opentrons/protocol_engine/types/deck_configuration.py +72 -0
  153. opentrons/protocol_engine/types/execution.py +96 -0
  154. opentrons/protocol_engine/types/hardware_passthrough.py +25 -0
  155. opentrons/protocol_engine/types/instrument.py +47 -0
  156. opentrons/protocol_engine/types/instrument_sensors.py +47 -0
  157. opentrons/protocol_engine/types/labware.py +111 -0
  158. opentrons/protocol_engine/types/labware_movement.py +22 -0
  159. opentrons/protocol_engine/types/labware_offset_location.py +111 -0
  160. opentrons/protocol_engine/types/labware_offset_vector.py +33 -0
  161. opentrons/protocol_engine/types/liquid.py +40 -0
  162. opentrons/protocol_engine/types/liquid_class.py +59 -0
  163. opentrons/protocol_engine/types/liquid_handling.py +13 -0
  164. opentrons/protocol_engine/types/liquid_level_detection.py +131 -0
  165. opentrons/protocol_engine/types/location.py +194 -0
  166. opentrons/protocol_engine/types/module.py +301 -0
  167. opentrons/protocol_engine/types/partial_tip_configuration.py +76 -0
  168. opentrons/protocol_engine/types/run_time_parameters.py +133 -0
  169. opentrons/protocol_engine/types/tip.py +18 -0
  170. opentrons/protocol_engine/types/util.py +21 -0
  171. opentrons/protocol_engine/types/well_position.py +124 -0
  172. opentrons/protocol_reader/extract_labware_definitions.py +7 -3
  173. opentrons/protocol_reader/file_format_validator.py +5 -3
  174. opentrons/protocol_runner/json_translator.py +4 -2
  175. opentrons/protocol_runner/legacy_command_mapper.py +6 -2
  176. opentrons/protocol_runner/run_orchestrator.py +4 -1
  177. opentrons/protocols/advanced_control/transfers/common.py +48 -1
  178. opentrons/protocols/advanced_control/transfers/transfer_liquid_utils.py +204 -0
  179. opentrons/protocols/api_support/definitions.py +1 -1
  180. opentrons/protocols/api_support/instrument.py +16 -3
  181. opentrons/protocols/labware.py +27 -23
  182. opentrons/protocols/models/__init__.py +0 -21
  183. opentrons/simulate.py +4 -2
  184. opentrons/types.py +20 -7
  185. opentrons/util/logging_config.py +94 -25
  186. opentrons/util/logging_queue_handler.py +61 -0
  187. {opentrons-8.3.2.dist-info → opentrons-8.4.0.dist-info}/METADATA +4 -4
  188. {opentrons-8.3.2.dist-info → opentrons-8.4.0.dist-info}/RECORD +192 -151
  189. opentrons/calibration_storage/ot2/models/defaults.py +0 -0
  190. opentrons/calibration_storage/ot3/models/defaults.py +0 -0
  191. opentrons/protocol_api/core/legacy/legacy_robot_core.py +0 -0
  192. opentrons/protocol_engine/types.py +0 -1311
  193. {opentrons-8.3.2.dist-info → opentrons-8.4.0.dist-info}/LICENSE +0 -0
  194. {opentrons-8.3.2.dist-info → opentrons-8.4.0.dist-info}/WHEEL +0 -0
  195. {opentrons-8.3.2.dist-info → opentrons-8.4.0.dist-info}/entry_points.txt +0 -0
  196. {opentrons-8.3.2.dist-info → opentrons-8.4.0.dist-info}/top_level.txt +0 -0
opentrons/calibration_storage/ot2/models/defaults.py DELETED
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opentrons/calibration_storage/ot3/models/defaults.py DELETED
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opentrons/protocol_api/core/legacy/legacy_robot_core.py DELETED
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