opentrons 8.2.0a3__py2.py3-none-any.whl → 8.3.0__py2.py3-none-any.whl

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Files changed (238) hide show
  1. opentrons/calibration_storage/deck_configuration.py +3 -3
  2. opentrons/calibration_storage/file_operators.py +3 -3
  3. opentrons/calibration_storage/helpers.py +3 -1
  4. opentrons/calibration_storage/ot2/models/v1.py +16 -29
  5. opentrons/calibration_storage/ot2/tip_length.py +7 -4
  6. opentrons/calibration_storage/ot3/models/v1.py +14 -23
  7. opentrons/cli/analyze.py +18 -6
  8. opentrons/config/defaults_ot3.py +1 -0
  9. opentrons/drivers/asyncio/communication/__init__.py +2 -0
  10. opentrons/drivers/asyncio/communication/errors.py +16 -3
  11. opentrons/drivers/asyncio/communication/serial_connection.py +24 -9
  12. opentrons/drivers/command_builder.py +2 -2
  13. opentrons/drivers/flex_stacker/__init__.py +9 -0
  14. opentrons/drivers/flex_stacker/abstract.py +89 -0
  15. opentrons/drivers/flex_stacker/driver.py +260 -0
  16. opentrons/drivers/flex_stacker/simulator.py +109 -0
  17. opentrons/drivers/flex_stacker/types.py +138 -0
  18. opentrons/drivers/heater_shaker/driver.py +18 -3
  19. opentrons/drivers/temp_deck/driver.py +13 -3
  20. opentrons/drivers/thermocycler/driver.py +17 -3
  21. opentrons/execute.py +3 -1
  22. opentrons/hardware_control/__init__.py +1 -2
  23. opentrons/hardware_control/api.py +33 -21
  24. opentrons/hardware_control/backends/flex_protocol.py +17 -7
  25. opentrons/hardware_control/backends/ot3controller.py +213 -63
  26. opentrons/hardware_control/backends/ot3simulator.py +18 -9
  27. opentrons/hardware_control/backends/ot3utils.py +43 -15
  28. opentrons/hardware_control/dev_types.py +4 -0
  29. opentrons/hardware_control/emulation/heater_shaker.py +4 -0
  30. opentrons/hardware_control/emulation/module_server/client.py +1 -1
  31. opentrons/hardware_control/emulation/module_server/server.py +5 -3
  32. opentrons/hardware_control/emulation/settings.py +3 -4
  33. opentrons/hardware_control/instruments/ot2/instrument_calibration.py +2 -1
  34. opentrons/hardware_control/instruments/ot2/pipette.py +15 -22
  35. opentrons/hardware_control/instruments/ot2/pipette_handler.py +8 -1
  36. opentrons/hardware_control/instruments/ot3/gripper.py +2 -2
  37. opentrons/hardware_control/instruments/ot3/pipette.py +23 -22
  38. opentrons/hardware_control/instruments/ot3/pipette_handler.py +10 -1
  39. opentrons/hardware_control/modules/mod_abc.py +2 -2
  40. opentrons/hardware_control/motion_utilities.py +68 -0
  41. opentrons/hardware_control/nozzle_manager.py +39 -41
  42. opentrons/hardware_control/ot3_calibration.py +1 -1
  43. opentrons/hardware_control/ot3api.py +78 -31
  44. opentrons/hardware_control/protocols/gripper_controller.py +3 -0
  45. opentrons/hardware_control/protocols/hardware_manager.py +5 -1
  46. opentrons/hardware_control/protocols/liquid_handler.py +22 -1
  47. opentrons/hardware_control/protocols/motion_controller.py +7 -0
  48. opentrons/hardware_control/robot_calibration.py +1 -1
  49. opentrons/hardware_control/types.py +61 -0
  50. opentrons/legacy_commands/commands.py +37 -0
  51. opentrons/legacy_commands/types.py +39 -0
  52. opentrons/protocol_api/__init__.py +20 -1
  53. opentrons/protocol_api/_liquid.py +24 -49
  54. opentrons/protocol_api/_liquid_properties.py +754 -0
  55. opentrons/protocol_api/_types.py +24 -0
  56. opentrons/protocol_api/core/common.py +2 -0
  57. opentrons/protocol_api/core/engine/instrument.py +191 -10
  58. opentrons/protocol_api/core/engine/labware.py +29 -7
  59. opentrons/protocol_api/core/engine/protocol.py +130 -5
  60. opentrons/protocol_api/core/engine/robot.py +139 -0
  61. opentrons/protocol_api/core/engine/well.py +4 -1
  62. opentrons/protocol_api/core/instrument.py +73 -4
  63. opentrons/protocol_api/core/labware.py +13 -4
  64. opentrons/protocol_api/core/legacy/legacy_instrument_core.py +87 -3
  65. opentrons/protocol_api/core/legacy/legacy_labware_core.py +13 -4
  66. opentrons/protocol_api/core/legacy/legacy_protocol_core.py +32 -1
  67. opentrons/protocol_api/core/legacy/legacy_robot_core.py +0 -0
  68. opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py +61 -3
  69. opentrons/protocol_api/core/protocol.py +34 -1
  70. opentrons/protocol_api/core/robot.py +51 -0
  71. opentrons/protocol_api/instrument_context.py +299 -44
  72. opentrons/protocol_api/labware.py +248 -9
  73. opentrons/protocol_api/module_contexts.py +21 -17
  74. opentrons/protocol_api/protocol_context.py +125 -4
  75. opentrons/protocol_api/robot_context.py +204 -32
  76. opentrons/protocol_api/validation.py +262 -3
  77. opentrons/protocol_engine/__init__.py +4 -0
  78. opentrons/protocol_engine/actions/actions.py +2 -3
  79. opentrons/protocol_engine/clients/sync_client.py +18 -0
  80. opentrons/protocol_engine/commands/__init__.py +121 -0
  81. opentrons/protocol_engine/commands/absorbance_reader/close_lid.py +1 -3
  82. opentrons/protocol_engine/commands/absorbance_reader/initialize.py +20 -6
  83. opentrons/protocol_engine/commands/absorbance_reader/open_lid.py +1 -2
  84. opentrons/protocol_engine/commands/absorbance_reader/read.py +40 -10
  85. opentrons/protocol_engine/commands/air_gap_in_place.py +160 -0
  86. opentrons/protocol_engine/commands/aspirate.py +103 -53
  87. opentrons/protocol_engine/commands/aspirate_in_place.py +55 -51
  88. opentrons/protocol_engine/commands/blow_out.py +44 -39
  89. opentrons/protocol_engine/commands/blow_out_in_place.py +21 -32
  90. opentrons/protocol_engine/commands/calibration/calibrate_gripper.py +13 -6
  91. opentrons/protocol_engine/commands/calibration/calibrate_module.py +1 -1
  92. opentrons/protocol_engine/commands/calibration/calibrate_pipette.py +3 -3
  93. opentrons/protocol_engine/commands/calibration/move_to_maintenance_position.py +1 -1
  94. opentrons/protocol_engine/commands/command.py +73 -66
  95. opentrons/protocol_engine/commands/command_unions.py +140 -1
  96. opentrons/protocol_engine/commands/comment.py +1 -1
  97. opentrons/protocol_engine/commands/configure_for_volume.py +10 -3
  98. opentrons/protocol_engine/commands/configure_nozzle_layout.py +6 -4
  99. opentrons/protocol_engine/commands/custom.py +6 -12
  100. opentrons/protocol_engine/commands/dispense.py +82 -48
  101. opentrons/protocol_engine/commands/dispense_in_place.py +71 -51
  102. opentrons/protocol_engine/commands/drop_tip.py +52 -31
  103. opentrons/protocol_engine/commands/drop_tip_in_place.py +79 -8
  104. opentrons/protocol_engine/commands/evotip_dispense.py +156 -0
  105. opentrons/protocol_engine/commands/evotip_seal_pipette.py +331 -0
  106. opentrons/protocol_engine/commands/evotip_unseal_pipette.py +160 -0
  107. opentrons/protocol_engine/commands/generate_command_schema.py +4 -11
  108. opentrons/protocol_engine/commands/get_next_tip.py +134 -0
  109. opentrons/protocol_engine/commands/get_tip_presence.py +1 -1
  110. opentrons/protocol_engine/commands/heater_shaker/close_labware_latch.py +1 -1
  111. opentrons/protocol_engine/commands/heater_shaker/deactivate_heater.py +1 -1
  112. opentrons/protocol_engine/commands/heater_shaker/deactivate_shaker.py +1 -1
  113. opentrons/protocol_engine/commands/heater_shaker/open_labware_latch.py +1 -1
  114. opentrons/protocol_engine/commands/heater_shaker/set_and_wait_for_shake_speed.py +1 -1
  115. opentrons/protocol_engine/commands/heater_shaker/set_target_temperature.py +1 -1
  116. opentrons/protocol_engine/commands/heater_shaker/wait_for_temperature.py +10 -4
  117. opentrons/protocol_engine/commands/home.py +13 -4
  118. opentrons/protocol_engine/commands/liquid_probe.py +125 -31
  119. opentrons/protocol_engine/commands/load_labware.py +33 -6
  120. opentrons/protocol_engine/commands/load_lid.py +146 -0
  121. opentrons/protocol_engine/commands/load_lid_stack.py +189 -0
  122. opentrons/protocol_engine/commands/load_liquid.py +12 -4
  123. opentrons/protocol_engine/commands/load_liquid_class.py +144 -0
  124. opentrons/protocol_engine/commands/load_module.py +31 -10
  125. opentrons/protocol_engine/commands/load_pipette.py +19 -8
  126. opentrons/protocol_engine/commands/magnetic_module/disengage.py +1 -1
  127. opentrons/protocol_engine/commands/magnetic_module/engage.py +1 -1
  128. opentrons/protocol_engine/commands/move_labware.py +28 -6
  129. opentrons/protocol_engine/commands/move_relative.py +35 -25
  130. opentrons/protocol_engine/commands/move_to_addressable_area.py +40 -27
  131. opentrons/protocol_engine/commands/move_to_addressable_area_for_drop_tip.py +53 -32
  132. opentrons/protocol_engine/commands/move_to_coordinates.py +36 -22
  133. opentrons/protocol_engine/commands/move_to_well.py +40 -24
  134. opentrons/protocol_engine/commands/movement_common.py +338 -0
  135. opentrons/protocol_engine/commands/pick_up_tip.py +49 -27
  136. opentrons/protocol_engine/commands/pipetting_common.py +169 -87
  137. opentrons/protocol_engine/commands/prepare_to_aspirate.py +24 -33
  138. opentrons/protocol_engine/commands/reload_labware.py +1 -1
  139. opentrons/protocol_engine/commands/retract_axis.py +1 -1
  140. opentrons/protocol_engine/commands/robot/__init__.py +69 -0
  141. opentrons/protocol_engine/commands/robot/close_gripper_jaw.py +86 -0
  142. opentrons/protocol_engine/commands/robot/common.py +18 -0
  143. opentrons/protocol_engine/commands/robot/move_axes_relative.py +101 -0
  144. opentrons/protocol_engine/commands/robot/move_axes_to.py +100 -0
  145. opentrons/protocol_engine/commands/robot/move_to.py +94 -0
  146. opentrons/protocol_engine/commands/robot/open_gripper_jaw.py +77 -0
  147. opentrons/protocol_engine/commands/save_position.py +14 -5
  148. opentrons/protocol_engine/commands/set_rail_lights.py +1 -1
  149. opentrons/protocol_engine/commands/set_status_bar.py +1 -1
  150. opentrons/protocol_engine/commands/temperature_module/deactivate.py +1 -1
  151. opentrons/protocol_engine/commands/temperature_module/set_target_temperature.py +1 -1
  152. opentrons/protocol_engine/commands/temperature_module/wait_for_temperature.py +10 -4
  153. opentrons/protocol_engine/commands/thermocycler/close_lid.py +1 -1
  154. opentrons/protocol_engine/commands/thermocycler/deactivate_block.py +1 -1
  155. opentrons/protocol_engine/commands/thermocycler/deactivate_lid.py +1 -1
  156. opentrons/protocol_engine/commands/thermocycler/open_lid.py +1 -1
  157. opentrons/protocol_engine/commands/thermocycler/run_extended_profile.py +9 -3
  158. opentrons/protocol_engine/commands/thermocycler/run_profile.py +9 -3
  159. opentrons/protocol_engine/commands/thermocycler/set_target_block_temperature.py +11 -4
  160. opentrons/protocol_engine/commands/thermocycler/set_target_lid_temperature.py +1 -1
  161. opentrons/protocol_engine/commands/thermocycler/wait_for_block_temperature.py +1 -1
  162. opentrons/protocol_engine/commands/thermocycler/wait_for_lid_temperature.py +1 -1
  163. opentrons/protocol_engine/commands/touch_tip.py +65 -16
  164. opentrons/protocol_engine/commands/unsafe/unsafe_blow_out_in_place.py +5 -2
  165. opentrons/protocol_engine/commands/unsafe/unsafe_drop_tip_in_place.py +13 -4
  166. opentrons/protocol_engine/commands/unsafe/unsafe_engage_axes.py +2 -5
  167. opentrons/protocol_engine/commands/unsafe/unsafe_place_labware.py +1 -1
  168. opentrons/protocol_engine/commands/unsafe/unsafe_ungrip_labware.py +4 -2
  169. opentrons/protocol_engine/commands/unsafe/update_position_estimators.py +2 -5
  170. opentrons/protocol_engine/commands/verify_tip_presence.py +11 -4
  171. opentrons/protocol_engine/commands/wait_for_duration.py +10 -3
  172. opentrons/protocol_engine/commands/wait_for_resume.py +10 -3
  173. opentrons/protocol_engine/errors/__init__.py +12 -0
  174. opentrons/protocol_engine/errors/error_occurrence.py +19 -20
  175. opentrons/protocol_engine/errors/exceptions.py +76 -0
  176. opentrons/protocol_engine/execution/command_executor.py +1 -1
  177. opentrons/protocol_engine/execution/equipment.py +73 -5
  178. opentrons/protocol_engine/execution/gantry_mover.py +369 -8
  179. opentrons/protocol_engine/execution/hardware_stopper.py +7 -7
  180. opentrons/protocol_engine/execution/movement.py +27 -0
  181. opentrons/protocol_engine/execution/pipetting.py +5 -1
  182. opentrons/protocol_engine/execution/tip_handler.py +34 -15
  183. opentrons/protocol_engine/notes/notes.py +1 -1
  184. opentrons/protocol_engine/protocol_engine.py +7 -6
  185. opentrons/protocol_engine/resources/labware_data_provider.py +1 -1
  186. opentrons/protocol_engine/resources/labware_validation.py +18 -0
  187. opentrons/protocol_engine/resources/module_data_provider.py +1 -1
  188. opentrons/protocol_engine/resources/pipette_data_provider.py +26 -0
  189. opentrons/protocol_engine/slot_standardization.py +9 -9
  190. opentrons/protocol_engine/state/_move_types.py +9 -5
  191. opentrons/protocol_engine/state/_well_math.py +193 -0
  192. opentrons/protocol_engine/state/addressable_areas.py +25 -61
  193. opentrons/protocol_engine/state/command_history.py +12 -0
  194. opentrons/protocol_engine/state/commands.py +22 -14
  195. opentrons/protocol_engine/state/files.py +10 -12
  196. opentrons/protocol_engine/state/fluid_stack.py +138 -0
  197. opentrons/protocol_engine/state/frustum_helpers.py +63 -69
  198. opentrons/protocol_engine/state/geometry.py +47 -1
  199. opentrons/protocol_engine/state/labware.py +92 -26
  200. opentrons/protocol_engine/state/liquid_classes.py +82 -0
  201. opentrons/protocol_engine/state/liquids.py +16 -4
  202. opentrons/protocol_engine/state/modules.py +56 -71
  203. opentrons/protocol_engine/state/motion.py +6 -1
  204. opentrons/protocol_engine/state/pipettes.py +149 -58
  205. opentrons/protocol_engine/state/state.py +21 -2
  206. opentrons/protocol_engine/state/state_summary.py +4 -2
  207. opentrons/protocol_engine/state/tips.py +11 -44
  208. opentrons/protocol_engine/state/update_types.py +343 -48
  209. opentrons/protocol_engine/state/wells.py +19 -11
  210. opentrons/protocol_engine/types.py +176 -28
  211. opentrons/protocol_reader/extract_labware_definitions.py +5 -2
  212. opentrons/protocol_reader/file_format_validator.py +5 -5
  213. opentrons/protocol_runner/json_file_reader.py +9 -3
  214. opentrons/protocol_runner/json_translator.py +51 -25
  215. opentrons/protocol_runner/legacy_command_mapper.py +66 -64
  216. opentrons/protocol_runner/protocol_runner.py +35 -4
  217. opentrons/protocol_runner/python_protocol_wrappers.py +1 -1
  218. opentrons/protocol_runner/run_orchestrator.py +13 -3
  219. opentrons/protocols/advanced_control/common.py +38 -0
  220. opentrons/protocols/advanced_control/mix.py +1 -1
  221. opentrons/protocols/advanced_control/transfers/__init__.py +0 -0
  222. opentrons/protocols/advanced_control/transfers/common.py +56 -0
  223. opentrons/protocols/advanced_control/{transfers.py → transfers/transfer.py} +10 -85
  224. opentrons/protocols/api_support/definitions.py +1 -1
  225. opentrons/protocols/api_support/instrument.py +1 -1
  226. opentrons/protocols/api_support/util.py +10 -0
  227. opentrons/protocols/labware.py +70 -8
  228. opentrons/protocols/models/json_protocol.py +5 -9
  229. opentrons/simulate.py +3 -1
  230. opentrons/types.py +162 -2
  231. opentrons/util/entrypoint_util.py +2 -5
  232. opentrons/util/logging_config.py +1 -1
  233. {opentrons-8.2.0a3.dist-info → opentrons-8.3.0.dist-info}/METADATA +16 -15
  234. {opentrons-8.2.0a3.dist-info → opentrons-8.3.0.dist-info}/RECORD +238 -208
  235. {opentrons-8.2.0a3.dist-info → opentrons-8.3.0.dist-info}/WHEEL +1 -1
  236. {opentrons-8.2.0a3.dist-info → opentrons-8.3.0.dist-info}/LICENSE +0 -0
  237. {opentrons-8.2.0a3.dist-info → opentrons-8.3.0.dist-info}/entry_points.txt +0 -0
  238. {opentrons-8.2.0a3.dist-info → opentrons-8.3.0.dist-info}/top_level.txt +0 -0
opentrons/util/logging_config.py CHANGED
@@ -36,7 +36,7 @@ def _host_config(level_value: int) -> Dict[str, Any]:
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  "class": "logging.handlers.RotatingFileHandler",
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  "formatter": "basic",
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  "filename": serial_log_filename,
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- "maxBytes": 5000000,
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+ "maxBytes": 1000000,
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  "level": logging.DEBUG,
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  "backupCount": 3,
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  },
{opentrons-8.2.0a3.dist-info → opentrons-8.3.0.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: opentrons
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- Version: 8.2.0a3
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+ Version: 8.3.0
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  Summary: The Opentrons API is a simple framework designed to make writing automated biology lab protocols easy.
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  Author: Opentrons
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  Author-email: engineering@opentrons.com
@@ -21,22 +21,23 @@ Classifier: Programming Language :: Python :: 3.10
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  Classifier: Topic :: Scientific/Engineering
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  Requires-Python: >=3.10
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  License-File: ../LICENSE
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- Requires-Dist: opentrons-shared-data ==8.2.0a3
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- Requires-Dist: aionotify ==0.3.1
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- Requires-Dist: anyio <4.0.0,>=3.6.1
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- Requires-Dist: jsonschema <4.18.0,>=3.0.1
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- Requires-Dist: numpy <2,>=1.20.0
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- Requires-Dist: pydantic <2.0.0,>=1.10.9
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- Requires-Dist: pyserial >=3.5
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- Requires-Dist: typing-extensions <5,>=4.0.0
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- Requires-Dist: click <9,>=8.0.0
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- Requires-Dist: pyusb ==1.2.1
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- Requires-Dist: packaging >=21.0
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- Requires-Dist: importlib-metadata >=1.0 ; python_version < "3.8"
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+ Requires-Dist: opentrons-shared-data (==8.3.0)
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+ Requires-Dist: aionotify (==0.3.1)
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+ Requires-Dist: anyio (<4.0.0,>=3.6.1)
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+ Requires-Dist: jsonschema (<4.18.0,>=3.0.1)
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+ Requires-Dist: numpy (<2,>=1.20.0)
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+ Requires-Dist: pydantic (<3,>=2.0.0)
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+ Requires-Dist: pydantic-settings (<3,>=2)
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+ Requires-Dist: pyserial (>=3.5)
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+ Requires-Dist: typing-extensions (<5,>=4.0.0)
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+ Requires-Dist: click (<9,>=8.0.0)
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+ Requires-Dist: pyusb (==1.2.1)
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+ Requires-Dist: packaging (>=21.0)
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+ Requires-Dist: importlib-metadata (>=1.0) ; python_version < "3.8"
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  Provides-Extra: flex-hardware
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- Requires-Dist: opentrons-hardware[flex] ==8.2.0a3 ; extra == 'flex-hardware'
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+ Requires-Dist: opentrons-hardware[flex] (==8.3.0) ; extra == 'flex-hardware'
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  Provides-Extra: ot2-hardware
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- Requires-Dist: opentrons-hardware ==8.2.0a3 ; extra == 'ot2-hardware'
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+ Requires-Dist: opentrons-hardware (==8.3.0) ; extra == 'ot2-hardware'
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  .. _Full API Documentation: http://docs.opentrons.com
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