omnigenome 0.3.0a1__py3-none-any.whl → 0.3.3a0__py3-none-any.whl

omnigenome/src/abc/abstract_model.py

@@ -1,689 +0,0 @@
-# -*- coding: utf-8 -*-
-# file: omnigenome_model.py
-# time: 18:36 06/04/2024
-# author: YANG, HENG <hy345@exeter.ac.uk> (杨恒)
-# github: https://github.com/yangheng95
-# huggingface: https://huggingface.co/yangheng
-# google scholar: https://scholar.google.com/citations?user=NPq5a_0AAAAJ&hl=en
-# Copyright (C) 2019-2024. All Rights Reserved.
-import json
-import os
-import shutil
-import warnings
-import inspect
-from importlib import import_module
-
-import dill
-import findfile
-import torch
-from transformers import AutoModel, AutoConfig, AutoTokenizer, BatchEncoding
-
-from ..misc.utils import fprint, env_meta_info
-
-warnings.filterwarnings("once")
-
-
-def count_parameters(model):
-    """
-    Counts the number of trainable parameters in a model.
-
-    This function iterates through all parameters of a PyTorch model and counts
-    only those that require gradients (i.e., trainable parameters).
-
-    Args:
-        model (torch.nn.Module): A PyTorch model.
-
-    Returns:
-        int: The total number of trainable parameters.
-
-    Example:
-        >>> model = OmniModelForSequenceClassification(config, tokenizer)
-        >>> num_params = count_parameters(model)
-        >>> print(f"Model has {num_params} trainable parameters")
-    """
-    return sum(p.numel() for p in model.parameters() if p.requires_grad)
-
-
-class OmniModel(torch.nn.Module):
-    """
-    Abstract base class for all models in OmniGenome.
-    
-    This class provides a unified interface for all genomic models in the OmniGenome
-    framework. It handles model initialization, forward passes, loss computation,
-    prediction, inference, and model persistence.
-    
-    The class is designed to work with various types of genomic data and tasks,
-    including sequence classification, token classification, regression, and more.
-    
-    Attributes:
-        model (torch.nn.Module): The underlying PyTorch model.
-        config: The model configuration.
-        tokenizer: The tokenizer associated with the model.
-        metadata (dict): Metadata about the model including version info.
-        loss_fn: The loss function for training.
-        dropout (torch.nn.Dropout): Dropout layer for regularization.
-        activation (torch.nn.Tanh): Activation function.
-        pad_token_id (int): ID of the padding token.
-    """
-
-    def __init__(self, config_or_model, tokenizer, *args, **kwargs):
-        """
-        Initializes the model.
-
-        This method handles different types of model initialization:
-        - From a pre-trained model path (string)
-        - From a PyTorch model instance
-        - From a configuration object
-
-        Args:
-            config_or_model: A model configuration, a pre-trained model path (str), 
-                           or a `torch.nn.Module` instance.
-            tokenizer: The tokenizer associated with the model.
-            *args: Additional positional arguments.
-            **kwargs: Additional keyword arguments.
-                - label2id (dict): Mapping from class labels to IDs.
-                - num_labels (int): The number of labels.
-                - trust_remote_code (bool): Whether to trust remote code when loading 
-                  from Hugging Face Hub. Defaults to True.
-                - ignore_mismatched_sizes (bool): Whether to ignore size mismatches 
-                  when loading pre-trained weights. Defaults to False.
-                - dropout (float): Dropout rate. Defaults to 0.0.
-
-        Raises:
-            ValueError: If config_or_model is not a valid type or if required
-                      configuration is missing.
-            RuntimeError: If the hidden size cannot be determined from the config.
-
-        Example:
-            >>> # Initialize from a pre-trained model
-            >>> model = OmniModelForSequenceClassification("model_path", tokenizer)
-            
-            >>> # Initialize from a configuration
-            >>> config = AutoConfig.from_pretrained("model_path")
-            >>> model = OmniModelForSequenceClassification(config, tokenizer)
-        """
-        self.loss_fn = None
-
-        label2id = kwargs.pop("label2id", None)
-        trust_remote_code = kwargs.pop("trust_remote_code", True)
-        num_labels = kwargs.pop("num_labels", None)
-        ignore_mismatched_sizes = kwargs.pop("ignore_mismatched_sizes", False)
-
-        if label2id is not None and num_labels is None:
-            num_labels = len(label2id)
-        elif num_labels is not None and label2id is None:
-            label2id = {str(i): i for i in range(num_labels)}
-
-        # do not change the order of the following lines
-        super().__init__(*args, **kwargs)
-
-        if isinstance(config_or_model, str):
-            config = AutoConfig.from_pretrained(
-                config_or_model,
-                num_labels=num_labels,
-                label2id=label2id,
-                trust_remote_code=trust_remote_code,
-            )
-            # Load the model from either `architectures` or `auto_map`
-            if hasattr(config, "auto_map") and config.auto_map:
-                architectures = list(set(config.auto_map.keys()) - set(["AutoConfig"]))
-                if architectures:
-                    model_cls_name = (
-                        "AutoModel"
-                        if "AutoModel" in architectures
-                        else architectures[-1]
-                    )
-                    model_cls = getattr(import_module(f"transformers"), model_cls_name)
-
-                    model = model_cls.from_pretrained(
-                        config_or_model,
-                        config=config,
-                        trust_remote_code=trust_remote_code,
-                        ignore_mismatched_sizes=ignore_mismatched_sizes,
-                    ).base_model
-                else:
-                    raise ValueError(
-                        f"The model cannot be instantiated from {config_or_model}. "
-                        f"Please check the model configuration contains the architectures or auto_map."
-                    )
-            elif hasattr(config, "architectures") and config.architectures:
-                model_cls_name = (
-                    AutoModel
-                    if "AutoModel" in config.architectures
-                    else config.architectures[-1]
-                )
-                model_cls = getattr(import_module(f"transformers"), model_cls_name)
-                model = model_cls.from_pretrained(
-                    config_or_model,
-                    config=config,
-                    trust_remote_code=trust_remote_code,
-                    ignore_mismatched_sizes=ignore_mismatched_sizes,
-                ).base_model
-            else:
-                raise ValueError(
-                    "Neither `architectures` nor `auto_map` is defined in the config."
-                )
-            self.model = model
-            self.model.config = config
-            del model_cls
-        elif isinstance(config_or_model, torch.nn.Module):
-            self.model = config_or_model
-            self.model.config.num_labels = (
-                num_labels if len(label2id) == num_labels else len(label2id)
-            )
-            self.model.config.label2id = label2id
-        elif isinstance(config_or_model, AutoConfig):
-            config = config_or_model
-            config.num_labels = (
-                num_labels if len(label2id) == num_labels else len(label2id)
-            )
-            config.label2id = label2id
-            self.model = AutoModel.from_config(config)
-            self.model.config = config
-        else:
-            raise ValueError(
-                "The config_or_model should be either a string, a torch.nn.Module or a AutoConfig object."
-            )
-
-        # Update the config
-        self.config = self.model.config
-        if isinstance(label2id, dict):
-            self.config.label2id = label2id
-            self.config.id2label = {v: k for k, v in label2id.items()}
-        if (
-            not hasattr(self.config, "num_labels")
-            or len(self.config.id2label) != self.config.num_labels
-        ):
-            fprint(
-                "Warning: The number of labels in the config is not equal to the number of labels in the label2id dictionary. "
-            )
-            fprint(
-                "Please check the label2id dictionary and the num_labels parameter in the config."
-            )
-            self.config.num_labels = len(self.config.id2label)
-
-        assert len(self.config.label2id) == num_labels, f"Expected {num_labels} labels, but got {len(self.config.label2id)} in label2id dictionary."
-
-        # The metadata of the model
-        self.metadata = env_meta_info()
-        self.metadata["model_cls"] = self.__class__.__name__
-
-        # The config of the model
-        if hasattr(self.config, "n_embd") and self.config.n_embd:
-            self.config.hidden_size = self.config.n_embd
-        elif hasattr(self.config, "d_model") and self.config.d_model:
-            self.config.hidden_size = self.config.d_model
-        elif hasattr(self.config, "hidden_size") and self.config.hidden_size:
-            self.config.hidden_size = self.config.hidden_size
-        else:
-            raise RuntimeError(
-                "The hidden size of the model is not found in the config."
-            )
-
-        # The tokenizer of the model
-        self.tokenizer = tokenizer
-        self.metadata["tokenizer_cls"] = self.tokenizer.__class__.__name__
-        if hasattr(self.tokenizer, "base_tokenizer"):
-            self.pad_token_id = self.tokenizer.base_tokenizer.pad_token_id
-        else:
-            self.pad_token_id = self.tokenizer.pad_token_id
-
-        self.dropout = torch.nn.Dropout(kwargs.get("dropout", 0.0))
-        self.activation = torch.nn.Tanh()
-
-    def last_hidden_state_forward(self, **inputs):
-        """
-        Performs a forward pass to get the last hidden state from the base model.
-
-        This method handles the forward pass through the underlying model and
-        returns the last hidden state. It also handles compatibility with different
-        model architectures by mapping input parameters appropriately.
-
-        Args:
-            **inputs: The inputs to the model, compatible with the base model's 
-                     forward method. Typically includes 'input_ids', 'attention_mask',
-                     and other model-specific parameters.
-
-        Returns:
-            torch.Tensor: The last hidden state tensor.
-
-        Example:
-            >>> inputs = {
-            ...     'input_ids': torch.tensor([[1, 2, 3, 4]]),
-            ...     'attention_mask': torch.tensor([[1, 1, 1, 1]])
-            ... }
-            >>> hidden_states = model.last_hidden_state_forward(**inputs)
-        """
-        model = self.model
-        input_mapping = {}
-        inputs["output_hidden_states"] = True
-
-        if "strippedhyena" in model.__class__.__name__.lower():
-            inputs["x"] = inputs["input_ids"]  # For compatibility with Evo models
-        if isinstance(inputs, BatchEncoding) or isinstance(inputs, dict):
-            # Determine the input parameter names of the model's forward method
-            forward_params = inspect.signature(model.forward).parameters
-            # Map the inputs to the forward method parameters
-            for param in forward_params:
-                if param in inputs:
-                    input_mapping[param] = inputs[param]
-            # 对于未在模型签名中声明的关键参数，可以给出警告或日志
-            ignored_keys = set(inputs.keys()) - set(input_mapping.keys())
-            if ignored_keys:
-                warnings.warn(f"Warning: Ignored keys in inputs: {ignored_keys}")
-
-            inputs = input_mapping
-        elif isinstance(inputs, tuple):
-            input_ids = inputs[0]
-            attention_mask = inputs[1] if len(inputs) > 1 else None
-            inputs = {"input_ids": input_ids, "attention_mask": attention_mask}
-        elif isinstance(inputs, torch.Tensor):
-            shape = inputs.shape
-            try:
-                if len(shape) == 3:
-                    if shape[1] == 2:
-                        input_ids = inputs[:, 0]
-                        attention_mask = inputs[:, 1]
-                    else:
-                        input_ids = inputs[0]
-                        attention_mask = inputs[1] if len(inputs) > 1 else None
-                elif len(shape) == 2:
-                    input_ids = inputs
-                    attention_mask = None
-                else:
-                    raise ValueError(
-                        f"Failed to get the input_ids and attention_mask from the inputs, got shape {shape}."
-                    )
-            except:
-                raise ValueError(
-                    f"Failed to get the input_ids and attention_mask from the inputs, got shape {shape}."
-                )
-            inputs = {"input_ids": input_ids, "attention_mask": attention_mask}
-        else:
-            raise ValueError(
-                f"The inputs should be a tuple, BatchEncoding or a dictionary-like object, got {type(inputs)}."
-            )
-
-        # 执行模型
-        outputs = model(**inputs)
-
-        if not hasattr(outputs, "last_hidden_state"):
-            warnings.warn(
-                f"last_hidden_state not found in the outputs from the {model.__class__.__name__} model."
-            )
-
-        if hasattr(outputs, "last_hidden_state"):
-            last_hidden_state = outputs.last_hidden_state
-        elif isinstance(outputs, dict) and "last_hidden_state" in outputs:
-            last_hidden_state = outputs["last_hidden_state"]
-        elif hasattr(outputs, "hidden_states"):
-            last_hidden_state = outputs.hidden_states[-1]
-        elif isinstance(outputs, (list, tuple, torch.Tensor)):
-            if len(outputs) <= 2:
-                # For Evo models that return a tuple of (last_hidden_state, logits)
-                last_hidden_state = outputs[0]
-            elif len(outputs) >= 3:
-                last_hidden_state = outputs[-1]
-        else:
-            raise ValueError(
-                f"Cannot find the last hidden state in the outputs from the {model.__class__.__name__} model, "
-                f"please check the model architecture."
-            )
-
-        return last_hidden_state
-
-    def loss_function(self, logits, labels):
-        """
-        Calculates the loss. Must be implemented by subclasses.
-
-        This method should be implemented by concrete model classes to define
-        how the loss is calculated for their specific task (classification,
-        regression, etc.).
-
-        Args:
-            logits (torch.Tensor): The model's output logits.
-            labels (torch.Tensor): The ground truth labels.
-
-        Returns:
-            torch.Tensor: The calculated loss.
-
-        Raises:
-            NotImplementedError: If the method is not implemented by the subclass.
-
-        Example:
-            >>> # In a classification model
-            >>> loss = model.loss_function(logits, labels)
-        """
-        raise NotImplementedError(
-            "The loss_function() function should be implemented for your model."
-        )
-
-    def set_loss_fn(self, loss_function):
-        """
-        Sets a custom loss function for the model.
-
-        This method allows setting a custom loss function that will be used
-        during training. The loss function should be compatible with the
-        model's output format.
-
-        Args:
-            loss_function (callable): A callable loss function that takes
-                                    logits and labels as arguments.
-
-        Example:
-            >>> import torch.nn as nn
-            >>> model.set_loss_fn(nn.CrossEntropyLoss())
-        """
-        self.loss_fn = loss_function
-
-    def predict(self, sequence_or_inputs, **kwargs):
-        """
-        Performs prediction on raw inputs. Returns raw model outputs.
-
-        This method takes raw sequences or tokenized inputs and returns
-        the raw model outputs (logits, hidden states, etc.) without
-        post-processing. It's useful for getting the model's direct
-        predictions for further processing.
-
-        Args:
-            sequence_or_inputs: A sequence (str), list of sequences, or 
-                               tokenized inputs (dict/tuple).
-            **kwargs: Additional arguments for tokenization and inference.
-
-        Returns:
-            dict: A dictionary containing the raw model outputs, typically
-                  including 'logits', 'last_hidden_state', and other
-                  model-specific outputs.
-
-        Example:
-            >>> # Predict on a single sequence
-            >>> outputs = model.predict("ATCGATCG")
-            
-            >>> # Predict on multiple sequences
-            >>> outputs = model.predict(["ATCGATCG", "GCTAGCTA"])
-        """
-        # Please implement the predict() function for your model
-        raw_outputs = self._forward_from_raw_input(sequence_or_inputs, **kwargs)
-        return raw_outputs
-
-    def inference(self, sequence_or_inputs, **kwargs):
-        """
-        Performs inference on raw inputs. Returns processed, human-readable predictions.
-
-        This method takes raw sequences or tokenized inputs and returns
-        processed predictions that are ready for human consumption. It
-        typically includes post-processing steps like converting logits
-        to class labels or probabilities.
-
-        Args:
-            sequence_or_inputs: A sequence (str), list of sequences, or 
-                               tokenized inputs (dict/tuple).
-            **kwargs: Additional arguments for tokenization and inference.
-
-        Returns:
-            dict: A dictionary containing the processed predictions, typically
-                  including 'predictions', 'confidence', and other
-                  human-readable outputs.
-
-        Example:
-            >>> # Inference on a single sequence
-            >>> results = model.inference("ATCGATCG")
-            >>> print(results['predictions'])  # Class labels
-            
-            >>> # Inference on multiple sequences
-            >>> results = model.inference(["ATCGATCG", "GCTAGCTA"])
-        """
-        # Please implement the predict() function for your model
-        raw_outputs = self._forward_from_raw_input(sequence_or_inputs, **kwargs)
-        return raw_outputs
-
-    def __call__(self, **inputs):
-        """
-        The main forward pass of the model, suitable for training loops.
-
-        This method is the primary interface for model forward passes during
-        training. It handles both tokenized inputs and raw sequences,
-        calculates loss if labels are provided, and returns a comprehensive
-        output dictionary.
-
-        Args:
-            **inputs: A dictionary of tokenized inputs, potentially including
-                     labels. Can also handle raw sequences that will be
-                     tokenized automatically.
-
-        Returns:
-            dict: A dictionary containing logits, last_hidden_state, labels,
-                  and loss (if labels were provided).
-
-        Example:
-            >>> # Training forward pass
-            >>> outputs = model(
-            ...     input_ids=torch.tensor([[1, 2, 3, 4]]),
-            ...     attention_mask=torch.tensor([[1, 1, 1, 1]]),
-            ...     labels=torch.tensor([0])
-            ... )
-            >>> loss = outputs['loss']
-        """
-        # For transformer trainer integration, we need to pop the "inputs" to be a tokenized inputs object.
-        # For native trainer, the inputs are already tokenized inputs object
-        labels = inputs.pop("labels", None)
-        inputs = inputs.pop("inputs", inputs)
-        inputs["labels"] = labels
-        if isinstance(inputs, dict):
-
-            labels = inputs.get("labels", None)
-            label = inputs.get("label", None)
-            labels = labels if labels is not None else label
-            # if labels is None:
-            #     warnings.warn(
-            #         "No labels are provided in the inputs, the model will not calculate the loss."
-            #     )
-        elif isinstance(inputs, tuple):
-            labels = inputs[1]
-            inputs = inputs[0]
-        elif labels is not None:
-            labels = labels
-        outputs = self.forward(**inputs)
-
-        if labels is not None:
-            outputs["loss"] = self._calculate_loss(outputs, labels)
-        else:
-            outputs["loss"] = None
-        return outputs
-
-    def _calculate_loss(self, outputs, labels):
-        """
-        Internal method to calculate loss if not already present in outputs.
-
-        :param outputs: The dictionary of model outputs.
-        :param labels: The ground truth labels.
-        :return: The calculated loss.
-        """
-        loss = outputs.get("loss", None)
-        if loss is not None:
-            return outputs
-
-        logits = outputs["logits"]
-        if logits is not None or labels is not None:
-            loss = self.loss_function(logits, labels)
-            return loss
-        else:
-            raise RuntimeError(
-                "The output of the forward() function should be a dictionary-like objective"
-                " and have either 'loss', or 'logits' and 'labels' attribute."
-            )
-
-    def save(self, path, overwrite=False, dtype=torch.float16, **kwargs):
-        """
-        Saves the model, tokenizer, and metadata to a directory.
-
-        :param path: The directory to save the model to.
-        :param overwrite: Whether to overwrite the directory if it exists.
-        :param dtype: The data type to save the model weights in.
-        :param kwargs: Additional arguments.
-        """
-        self.eval()
-
-        if os.path.exists(path) and not overwrite:
-            raise FileExistsError(
-                f"The path {path} already exists, please set overwrite=True to overwrite it."
-            )
-
-        if not os.path.exists(path):
-            os.makedirs(path)
-
-        for file in findfile.find_files(
-            self.config.name_or_path,
-            or_key=["bin", "json", "txt", "py"],
-            exclude_key=["pytorch_model.bin", "model.safetensors"],
-        ):
-            shutil.copyfile(file, f"{path}/{os.path.basename(file)}")
-
-        _device = self.model.device
-        _dtype = self.model.dtype
-        self.model.to(dtype).to("cpu")
-        self.tokenizer.save_pretrained(path)
-
-        # Save metadata including information about the loss function
-        metadata = self.metadata.copy()
-        if self.loss_fn is not None:
-            metadata["loss_fn_class"] = self.loss_fn.__class__.__name__
-            metadata["loss_fn_module"] = self.loss_fn.__class__.__module__
-
-        with open(f"{path}/metadata.json", "w", encoding="utf8") as f:
-            json.dump(metadata, f)
-        with open(f"{path}/tokenizer.bin", "wb") as f:
-            dill.dump(self.tokenizer, f)
-        self.model.save_pretrained(
-            f"{path}", safe_serialization=False
-        )  # do not remove this line, used to save customized model scripts
-
-        # Save complete state dict including all components
-        with open(f"{path}/pytorch_model.bin", "wb") as f:
-            torch.save(self.state_dict(), f)
-
-        self.model.to(_dtype).to(_device)
-        fprint(f"The model is saved to {path}.")
-
-    def load(self, path, **kwargs):
-        """
-        Loads the model, tokenizer, and metadata from a directory.
-
-        :param path: The directory to load the model from.
-        :param kwargs: Additional arguments.
-        :return: The loaded model instance.
-        """
-        with open(f"{path}/metadata.json", "r", encoding="utf8") as f:
-            metadata = json.load(f)
-
-        if metadata["model_cls"] != self.__class__.__name__:  # Check the model class
-            raise ValueError(
-                f"The model class in the loaded model is {metadata['model_cls']}, "
-                f"but the current model class is {self.__class__.__name__}."
-            )
-        config = AutoConfig.from_pretrained(path, trust_remote_code=True, **kwargs)
-
-        for key, value in config.__dict__.items():
-            if key not in self.config.__dict__ or self.config.__dict__[key] != value:
-                fprint(
-                    f"Warning: The value of the key {key} in the loaded model is {value}, "
-                    f"but the current value is {self.config.__dict__.get(key, None)}."
-                )
-
-        # Attempt to restore any saved loss function
-        if "loss_fn_class" in metadata and "loss_fn_module" in metadata:
-            try:
-                loss_module = import_module(metadata["loss_fn_module"])
-                loss_class = getattr(loss_module, metadata["loss_fn_class"])
-                # Initialize loss function if possible (parameters will be loaded with state dict)
-                self.loss_fn = loss_class()
-                fprint(
-                    f"Restored loss function: {metadata['loss_fn_class']} from {metadata['loss_fn_module']}"
-                )
-            except (ImportError, AttributeError) as e:
-                warnings.warn(f"Could not restore loss function: {e}")
-
-        with open(f"{path}/pytorch_model.bin", "rb") as f:
-            loaded_state_dict = torch.load(f, map_location=kwargs.get("device", "cpu"))
-
-            # Check if keys match between current and loaded state dict
-            current_keys = set(self.state_dict().keys())
-            loaded_keys = set(loaded_state_dict.keys())
-            missing_keys = current_keys - loaded_keys
-            unexpected_keys = loaded_keys - current_keys
-
-            if missing_keys:
-                warnings.warn(f"Missing keys in loaded weights: {missing_keys}")
-            if unexpected_keys:
-                warnings.warn(f"Unexpected keys in loaded weights: {unexpected_keys}")
-
-            self.load_state_dict(loaded_state_dict, strict=False)
-        # Load the tokenizer
-        if os.path.exists(f"{path}/tokenizer.bin"):
-            with open(f"{path}/tokenizer.bin", "rb") as f:
-                self.tokenizer = dill.load(f)
-
-        return self
-
-    def _forward_from_raw_input(self, sequence_or_inputs, **kwargs):
-        """
-        Tokenizes raw input and performs a forward pass in no_grad mode.
-
-        :param sequence_or_inputs: A sequence, list of sequences, or tokenized inputs.
-        :param kwargs: Additional arguments for tokenization.
-        :return: A dictionary containing the raw model outputs and the tokenized inputs.
-        """
-        if not isinstance(sequence_or_inputs, BatchEncoding) and not isinstance(
-            sequence_or_inputs, dict
-        ):
-            inputs = self.tokenizer(
-                sequence_or_inputs,
-                padding=kwargs.pop("padding", True),
-                max_length=kwargs.pop("max_length", 1024),
-                truncation=kwargs.pop("truncation", True),
-                return_tensors=kwargs.pop("return_tensors", "pt"),
-                **kwargs,
-            )
-        else:
-            inputs = sequence_or_inputs
-        inputs = inputs.to(self.model.device)
-        with torch.no_grad():
-            raw_outputs = self(**inputs)
-            raw_outputs["inputs"] = inputs
-        return raw_outputs
-
-    @staticmethod
-    def from_pretrained(model_name_or_path, tokenizer, *args, **kwargs):
-        """
-        Loads a pre-trained model and tokenizer.
-
-        :param model_name_or_path: The name or path of the pre-trained model.
-        :param tokenizer: The tokenizer to use.
-        :param args: Additional positional arguments.
-        :param kwargs: Additional keyword arguments.
-        :return: An instance of `OmniModel`.
-        """
-        config = kwargs.pop("config", None)
-        if config is None:
-            config = AutoConfig.from_pretrained(model_name_or_path, **kwargs)
-        base_model = AutoModel.from_pretrained(model_name_or_path, **kwargs)
-        if tokenizer is None:
-            tokenizer = AutoTokenizer.from_pretrained(base_model, **kwargs)
-        return OmniModel(config, base_model, tokenizer, *args, **kwargs)
-
-    def model_info(self):
-        """
-        Prints and returns detailed information about the model.
-
-        :return: A string containing the model information.
-        """
-        info = f"Model Name: {self.__class__.__name__}\n"
-        info += f"Model Metadata: {self.metadata}\n"
-        info += f"Base Model Name: {self.config.name_or_path}\n"
-        info += f"Model Type: {self.config.model_type}\n"
-        info += f"Model Architecture: {self.config.architectures}\n"
-        info += f"Model Parameters: {count_parameters(self.model) / 1e6} M\n"
-        info += f"Model Config: {self.config}\n"
-        fprint(info)
-        return info
-