offtracker 2.10.0__zip → 2.10.1__zip

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Files changed (30) hide show
  1. {offtracker-2.10.0/offtracker.egg-info → offtracker-2.10.1}/PKG-INFO +3 -3
  2. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/_version.py +2 -1
  3. {offtracker-2.10.0 → offtracker-2.10.1/offtracker.egg-info}/PKG-INFO +3 -3
  4. {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_candidates.py +1 -1
  5. {offtracker-2.10.0 → offtracker-2.10.1}/LICENSE.txt +0 -0
  6. {offtracker-2.10.0 → offtracker-2.10.1}/MANIFEST.in +0 -0
  7. {offtracker-2.10.0 → offtracker-2.10.1}/README.md +0 -0
  8. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/X_offplot.py +0 -0
  9. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/X_offtracker.py +0 -0
  10. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/X_sequence.py +0 -0
  11. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/__init__.py +0 -0
  12. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/snakefile/Snakefile_QC.smk +0 -0
  13. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/snakefile/Snakefile_offtracker.smk +0 -0
  14. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/1.1_bed2fr.py +0 -0
  15. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/1.3_bdg_normalize_v4.0.py +0 -0
  16. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/bedGraphToBigWig +0 -0
  17. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/hg38.chrom.sizes +0 -0
  18. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/mm10.chrom.sizes +0 -0
  19. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/offtracker_blacklist_hg38.merged.bed +0 -0
  20. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/offtracker_blacklist_mm10.merged.bed +0 -0
  21. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/SOURCES.txt +0 -0
  22. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/dependency_links.txt +0 -0
  23. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/requires.txt +0 -0
  24. {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/top_level.txt +0 -0
  25. {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_analysis.py +0 -0
  26. {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_config.py +0 -0
  27. {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_plot.py +0 -0
  28. {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_qc.py +0 -0
  29. {offtracker-2.10.0 → offtracker-2.10.1}/setup.cfg +0 -0
  30. {offtracker-2.10.0 → offtracker-2.10.1}/setup.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: offtracker
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- Version: 2.10.0
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+ Version: 2.10.1
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  Summary: Tracking-seq data analysis
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  Home-page: https://github.com/Lan-lab/offtracker
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  Author: Runda Xu
@@ -10,9 +10,9 @@ Description-Content-Type: text/markdown
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  License-File: LICENSE.txt
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- # OFF-TRACKER
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+ # Offtracker
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- OFF-TRACKER is an end to end pipeline of Tracking-seq data analysis for detecting off-target sites of any genome editing tools that generate double-strand breaks (DSBs) or single-strand breaks (SSBs).
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+ Offtracker is an end to end pipeline of Tracking-seq data analysis for detecting off-target sites of any genome editing tools that generate double-strand breaks (DSBs) or single-strand breaks (SSBs).
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  ## System requirements
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@@ -1,4 +1,4 @@
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- __version__ = "2.10.0"
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+ __version__ = "2.10.1"
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  # 2023.08.11. v1.1.0 adding a option for not normalizing the bw file
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  # 2023.10.26. v1.9.0 prerelease for v2.0
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  # 2023.10.27. v2.0.0 大更新,还没微调
@@ -33,4 +33,5 @@ __version__ = "2.10.0"
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  # 2025.04.25. v2.8.0 修复了 offtracker candidates 会把小写序列转换成 N 的 bug
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  # 2025.05.22. v2.9.0 翻新部分代码结构
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  # 2025.06.05. v2.10.0 增加了QC模块。保留了负数score的记录,并在plot时显示为红字。增加了 "--ignore_chr" 用于跳过common chr过滤。
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+ # 2025.06.17. v2.10.1 修复翻新代码结构导致的bug
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: offtracker
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- Version: 2.10.0
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+ Version: 2.10.1
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  Summary: Tracking-seq data analysis
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  Home-page: https://github.com/Lan-lab/offtracker
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  Author: Runda Xu
@@ -10,9 +10,9 @@ Description-Content-Type: text/markdown
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  License-File: LICENSE.txt
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- # OFF-TRACKER
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+ # Offtracker
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- OFF-TRACKER is an end to end pipeline of Tracking-seq data analysis for detecting off-target sites of any genome editing tools that generate double-strand breaks (DSBs) or single-strand breaks (SSBs).
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+ Offtracker is an end to end pipeline of Tracking-seq data analysis for detecting off-target sites of any genome editing tools that generate double-strand breaks (DSBs) or single-strand breaks (SSBs).
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  ## System requirements
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@@ -16,7 +16,7 @@ if sys.version_info < (3,0):
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  import offtracker
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  import offtracker.X_sequence as xseq
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  script_dir = os.path.abspath(os.path.dirname(offtracker.__file__))
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- script_folder= os.path.join(script_dir, 'mapping')
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+ script_folder= os.path.join(script_dir, 'utility')
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  import argparse
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  import pandas as pd
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