offtracker 2.10.0__zip → 2.10.1__zip
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {offtracker-2.10.0/offtracker.egg-info → offtracker-2.10.1}/PKG-INFO +3 -3
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/_version.py +2 -1
- {offtracker-2.10.0 → offtracker-2.10.1/offtracker.egg-info}/PKG-INFO +3 -3
- {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_candidates.py +1 -1
- {offtracker-2.10.0 → offtracker-2.10.1}/LICENSE.txt +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/MANIFEST.in +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/README.md +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/X_offplot.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/X_offtracker.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/X_sequence.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/__init__.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/snakefile/Snakefile_QC.smk +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/snakefile/Snakefile_offtracker.smk +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/1.1_bed2fr.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/1.3_bdg_normalize_v4.0.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/bedGraphToBigWig +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/hg38.chrom.sizes +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/mm10.chrom.sizes +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/offtracker_blacklist_hg38.merged.bed +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/offtracker_blacklist_mm10.merged.bed +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/SOURCES.txt +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/dependency_links.txt +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/requires.txt +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/offtracker.egg-info/top_level.txt +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_analysis.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_config.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_plot.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/scripts/offtracker_qc.py +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/setup.cfg +0 -0
- {offtracker-2.10.0 → offtracker-2.10.1}/setup.py +0 -0
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Metadata-Version: 2.1
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Name: offtracker
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Version: 2.10.
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Version: 2.10.1
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Summary: Tracking-seq data analysis
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Home-page: https://github.com/Lan-lab/offtracker
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Author: Runda Xu
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License-File: LICENSE.txt
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#
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# Offtracker
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Offtracker is an end to end pipeline of Tracking-seq data analysis for detecting off-target sites of any genome editing tools that generate double-strand breaks (DSBs) or single-strand breaks (SSBs).
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## System requirements
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__version__ = "2.10.
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__version__ = "2.10.1"
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# 2023.08.11. v1.1.0 adding a option for not normalizing the bw file
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# 2023.10.26. v1.9.0 prerelease for v2.0
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# 2023.10.27. v2.0.0 大更新,还没微调
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# 2025.04.25. v2.8.0 修复了 offtracker candidates 会把小写序列转换成 N 的 bug
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# 2025.05.22. v2.9.0 翻新部分代码结构
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# 2025.06.05. v2.10.0 增加了QC模块。保留了负数score的记录,并在plot时显示为红字。增加了 "--ignore_chr" 用于跳过common chr过滤。
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# 2025.06.17. v2.10.1 修复翻新代码结构导致的bug
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Metadata-Version: 2.1
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Name: offtracker
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Version: 2.10.
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Version: 2.10.1
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Summary: Tracking-seq data analysis
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Home-page: https://github.com/Lan-lab/offtracker
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Author: Runda Xu
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License-File: LICENSE.txt
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#
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# Offtracker
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Offtracker is an end to end pipeline of Tracking-seq data analysis for detecting off-target sites of any genome editing tools that generate double-strand breaks (DSBs) or single-strand breaks (SSBs).
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## System requirements
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import offtracker
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import offtracker.X_sequence as xseq
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script_dir = os.path.abspath(os.path.dirname(offtracker.__file__))
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script_folder= os.path.join(script_dir, '
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script_folder= os.path.join(script_dir, 'utility')
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import argparse
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import pandas as pd
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{offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/offtracker_blacklist_hg38.merged.bed
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{offtracker-2.10.0 → offtracker-2.10.1}/offtracker/utility/offtracker_blacklist_mm10.merged.bed
RENAMED
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