nmdc-schema 11.12.1__py3-none-any.whl → 11.14.0__py3-none-any.whl

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Files changed (20) hide show
  1. nmdc_schema/migrators/{migrator_from_11_11_0_to_11_12_0.py → migrator_from_11_11_0_to_11_13_0.py} +3 -3
  2. nmdc_schema/migrators/migrator_from_11_13_0_to_11_14_0.py +35 -0
  3. nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_13_0/__init__.py +30 -0
  4. nmdc_schema/migrators/partials/{migrator_from_11_11_0_to_11_12_0/migrator_from_11_11_0_to_11_12_0_part_1.py → migrator_from_11_11_0_to_11_13_0/migrator_from_11_11_0_to_11_13_0_part_1.py} +1 -1
  5. nmdc_schema/migrators/partials/{migrator_from_11_11_0_to_11_12_0/migrator_from_11_11_0_to_11_12_0_part_2.py → migrator_from_11_11_0_to_11_13_0/migrator_from_11_11_0_to_11_13_0_part_2.py} +2 -2
  6. nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_13_0/migrator_from_11_11_0_to_11_13_0_part_3.py +47 -0
  7. nmdc_schema/migrators/partials/{migrator_from_11_11_0_to_11_12_0 → migrator_from_11_13_0_to_11_14_0}/__init__.py +5 -5
  8. nmdc_schema/migrators/partials/migrator_from_11_13_0_to_11_14_0/migrator_from_11_13_0_to_11_14_0_part_1.py +113 -0
  9. nmdc_schema/migrators/partials/migrator_from_11_13_0_to_11_14_0/migrator_from_11_13_0_to_11_14_0_part_2.py +40 -0
  10. nmdc_schema/nmdc-pydantic.py +10558 -12093
  11. nmdc_schema/nmdc.py +328 -104
  12. nmdc_schema/nmdc.schema.json +187 -129
  13. nmdc_schema/nmdc_materialized_patterns.json +10799 -12067
  14. nmdc_schema/nmdc_materialized_patterns.schema.json +197 -128
  15. nmdc_schema/nmdc_materialized_patterns.yaml +7466 -8294
  16. {nmdc_schema-11.12.1.dist-info → nmdc_schema-11.14.0.dist-info}/METADATA +5 -5
  17. {nmdc_schema-11.12.1.dist-info → nmdc_schema-11.14.0.dist-info}/RECORD +20 -15
  18. {nmdc_schema-11.12.1.dist-info → nmdc_schema-11.14.0.dist-info}/entry_points.txt +0 -8
  19. {nmdc_schema-11.12.1.dist-info → nmdc_schema-11.14.0.dist-info}/WHEEL +0 -0
  20. {nmdc_schema-11.12.1.dist-info → nmdc_schema-11.14.0.dist-info}/licenses/LICENSE +0 -0
@@ -1,19 +1,18 @@
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  Metadata-Version: 2.4
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  Name: nmdc_schema
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- Version: 11.12.1
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+ Version: 11.14.0
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  Summary: Schema resources for the National Microbiome Data Collaborative (NMDC)
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  License: MIT
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  License-File: LICENSE
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  Keywords: NMDC,schema,metadata,microbiome
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  Author: Bill Duncan
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  Author-email: wdduncan@gmail.com
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- Requires-Python: >=3.9,<4.0
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+ Requires-Python: >=3.10,<4.0
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  Classifier: Development Status :: 5 - Production/Stable
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  Classifier: Intended Audience :: Developers
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  Classifier: Intended Audience :: Science/Research
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  Classifier: License :: OSI Approved :: MIT License
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  Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
@@ -26,13 +25,14 @@ Requires-Dist: curies (>=0.9.0,<0.10.0)
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  Requires-Dist: deprecated (>=1,<2)
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  Requires-Dist: jsonasobj2 (>=1,<2)
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  Requires-Dist: jsonschema (>=4,<5)
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- Requires-Dist: linkml (>=1.9.1,<2.0.0)
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- Requires-Dist: linkml-runtime (>=1.9.1,<2.0.0)
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+ Requires-Dist: linkml (>=1.9.6,<2.0.0)
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+ Requires-Dist: linkml-runtime (>=1.9.5,<2.0.0)
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  Requires-Dist: pymongo (>=4.7.2,<5.0.0)
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  Requires-Dist: python-dotenv
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  Requires-Dist: pyyaml (>=6,<7)
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  Requires-Dist: rdflib (>=6.2.0,<7.0.0)
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  Requires-Dist: requests (>=2,<3)
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+ Requires-Dist: urllib3 (>=2.6.0)
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  Project-URL: Documentation, https://microbiomedata.github.io/nmdc-schema/
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  Project-URL: Homepage, https://microbiomedata.github.io/nmdc-schema/
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  Project-URL: Repository, https://github.com/microbiomedata/nmdc-schema
@@ -41,7 +41,8 @@ nmdc_schema/migrators/migrator_from_10_5_6_to_10_6_0.py,sha256=_oeQz_mXVC-vyyfUs
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  nmdc_schema/migrators/migrator_from_10_6_0_to_10_7_0.py,sha256=-FduiWWIioYFQ2eST35NINok6cy6FoPuJ7-UXJPAi_E,450
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  nmdc_schema/migrators/migrator_from_11_0_3_to_11_1_0.py,sha256=3hHXGts_sfre4KuIpGCUNyRMgI92_lXm_U2UStU-fdw,1184
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  nmdc_schema/migrators/migrator_from_11_10_0_to_11_11_0.py,sha256=R4nUrhxRznukwKgkMQy8uuPzn-fE9AaQYNLLNsVOfTk,1354
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- nmdc_schema/migrators/migrator_from_11_11_0_to_11_12_0.py,sha256=0lFUiE8SU2fhqlyN9lBg6-AuRiIw9qmOmg8IIhPmryM,1353
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+ nmdc_schema/migrators/migrator_from_11_11_0_to_11_13_0.py,sha256=p0giuWeWOvxLe22T0QXNWxjzWWqgzJ1ZetpdVCz86IY,1354
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+ nmdc_schema/migrators/migrator_from_11_13_0_to_11_14_0.py,sha256=Y6WY3QGn9fVPh_hzyyC0UXX1U0nQNB624v48sJV_Gzo,1354
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  nmdc_schema/migrators/migrator_from_11_1_0_to_11_2_0.py,sha256=xGaG0oilg0Xvq-P6YOZea3EPQU8fyfcKo-KZl4BhgoM,1183
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  nmdc_schema/migrators/migrator_from_11_3_0_to_11_4_0.py,sha256=XDRsT9KrKlZTOGHQekESZ2XSYD2UDydF1PWTRIeqOVE,1985
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  nmdc_schema/migrators/migrator_from_11_4_0_to_11_5_0.py,sha256=uiFi5USF23lpuAbkDhVufnXxLsM-Aixrj4nw7GY-XO4,357
@@ -84,9 +85,13 @@ nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/migrator_from_11_0
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  nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/__init__.py,sha256=0Vyyg3SaqNsV426IFeWw1xgEDFAol5J57ggk7bDAAf4,1001
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  nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_1.py,sha256=JTjgjW8GhpDuNQajNN2EBoDzm6OFJg9E42pR7HDqIiE,3595
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  nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_2.py,sha256=cNgxp1XBVKSiQAAhUfLXWvEK8UyJTnveO_c_BqvlCVo,1986
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- nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_12_0/__init__.py,sha256=MQg_WO1szHMiaDN7e6wEY_eo2o_BE1htJ7bF-mcfvIw,1001
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- nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_12_0/migrator_from_11_11_0_to_11_12_0_part_1.py,sha256=ydGOhXXpsj6OkvLMz88w2Yzj9ibB1JinRWy-1jjSJYE,8668
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- nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_12_0/migrator_from_11_11_0_to_11_12_0_part_2.py,sha256=CvVPOWuLJEyen7pFN86VDTFZ9KdEnEhoE011e2L9e10,4851
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+ nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_13_0/__init__.py,sha256=qWAsZAOL3cOMM67gNVahlcPs9pqkGU8moo4nLJOo_wU,1102
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+ nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_13_0/migrator_from_11_11_0_to_11_13_0_part_1.py,sha256=ajPhHPDK1loTL7j_3hzBZo_EfT5gtoXlsNFmpDZCgPs,8668
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+ nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_13_0/migrator_from_11_11_0_to_11_13_0_part_2.py,sha256=sW5JhlO2DaGh9kvI9qWJQ85eYyUo9976sBurPdZ69Kk,4858
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+ nmdc_schema/migrators/partials/migrator_from_11_11_0_to_11_13_0/migrator_from_11_11_0_to_11_13_0_part_3.py,sha256=XKrq0jBLn6v4O96j045WkJsGubwP6ikLNyglEKH1_jE,1920
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+ nmdc_schema/migrators/partials/migrator_from_11_13_0_to_11_14_0/__init__.py,sha256=xXed_UcqkW7zWope_4ODapGf3xS_NKztCh6sK8GoUkc,999
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+ nmdc_schema/migrators/partials/migrator_from_11_13_0_to_11_14_0/migrator_from_11_13_0_to_11_14_0_part_1.py,sha256=7QuBZJlQE_emGgyQMfuiGBDDhdVVu57z6KQ8PStqyTs,5008
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+ nmdc_schema/migrators/partials/migrator_from_11_13_0_to_11_14_0/migrator_from_11_13_0_to_11_14_0_part_2.py,sha256=q5v3u6vFoIR12FbbI1Wji8guZ-D0RSxlOSTKzR0uNh0,1432
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  nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/__init__.py,sha256=e-neqgmL6Zsy6h5PGmWPj9qIqrTm3yvNgo2l2i7Sduc,990
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  nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/migrator_from_11_1_0_to_11_2_0_part_1.py,sha256=4nN_2iZqML84R9EgznIcj7FjIlRHSSM8XqLerUgMYbI,13230
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  nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/migrator_from_11_1_0_to_11_2_0_part_2.py,sha256=HLGoX3KQZglHPODDO5FFHu2gjFjyBx8oGJ3D9PAkhNI,1628
@@ -106,18 +111,18 @@ nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/__init__.py,sha25
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  nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_1.py,sha256=6MYmrB9yfJ3XFb2QabTcJeycK2tyVO3MtSItns2s9Zg,35421
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  nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_2.py,sha256=wzard2sUTeRS7voVTfPt3_OtafTffnv0o0OyE1OBzA0,2987
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  nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_3.py,sha256=crm2NEmn0xepEMKWHvCSkfX3G6hRn377f38rq24XlO8,3710
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- nmdc_schema/nmdc-pydantic.py,sha256=jCJl_A_HbE_sa1YrajAyx3yxh7D9FicGtch-GhsTcDc,1462437
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- nmdc_schema/nmdc.py,sha256=kphp1Npu66qGCs9EaJqQvOfiwI8ydTu1_Z6Xotjjlqc,730020
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- nmdc_schema/nmdc.schema.json,sha256=7KHr5AMe-DveFSEv8i2E8hL6JiCdRzHZJsMIAjCd0LI,629145
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+ nmdc_schema/nmdc-pydantic.py,sha256=-KFRbsDhJgamDFB25YrE-MDyJIYotUfumfyCtsVp16o,1407574
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+ nmdc_schema/nmdc.py,sha256=ekyLtGlyT7dMcZ-dwui7P_ZRc5NfM99xiZ3Attlk0rw,744344
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+ nmdc_schema/nmdc.schema.json,sha256=rwNxfZfGmJIP_uLwslNvX_xh64_sMpUWlsYGnVbisQ0,632806
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  nmdc_schema/nmdc_data.py,sha256=_wNKi5NDxuvvRsJEim2ialX7VJkDBJLRpiTOPpFHBm8,9608
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- nmdc_schema/nmdc_materialized_patterns.json,sha256=--Ldf1ZEL6VF0gfTPCydlBfGHts8dwEujfWdBp4qQxg,937613
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- nmdc_schema/nmdc_materialized_patterns.schema.json,sha256=3sGnS8aXLND6empjNu-YlQddbFuoLSneSgZpSVyQrL8,637428
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- nmdc_schema/nmdc_materialized_patterns.yaml,sha256=uTJa9P_Ng3LSV905jTWzM4Vy535hNel8IA83ecFj5I0,725518
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+ nmdc_schema/nmdc_materialized_patterns.json,sha256=4BxPDYqUiYMKvJfTMIXeM8fkcnv5KDEX75qlRFe518g,915842
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+ nmdc_schema/nmdc_materialized_patterns.schema.json,sha256=UYOWffYZaiUfVdCV0GXRnN2o2EIeYFVe8aZ2IdPv46A,642131
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+ nmdc_schema/nmdc_materialized_patterns.yaml,sha256=rMUjokG3a2WfhGS4YWonbIc4Rv1r9szX9_7D2KxINcc,711525
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  nmdc_schema/nmdc_schema_validation_plugin.py,sha256=rjtn1tYhngGyc1AV8vcT8BJ9a_MmHbcK3hRUf9dzPtA,4799
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  nmdc_schema/nmdc_version.py,sha256=DsfEKnmN3LHR831WWELxyfZY6rnP9U8tfygamkrsaHY,2305
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  nmdc_schema/validate_nmdc_json.py,sha256=PVJV2O1qQXMi206HaUKqRNLiLc164OpNYKPURSKN8_E,3148
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- nmdc_schema-11.12.1.dist-info/METADATA,sha256=wtKrUSPP6n3T3xgVvzlBtd59Ku-ELL6PXqG6LHlFHZ0,5899
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- nmdc_schema-11.12.1.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
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- nmdc_schema-11.12.1.dist-info/entry_points.txt,sha256=-UOl7vTEjS6eaJreIu_UenULpuKAYz8JiLeuKbEqPB8,2079
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- nmdc_schema-11.12.1.dist-info/licenses/LICENSE,sha256=ogEPNDSH0_dhiv_lT3ifVIdgIzHAqNA_SemnxUfPBJk,7048
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- nmdc_schema-11.12.1.dist-info/RECORD,,
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+ nmdc_schema-11.14.0.dist-info/METADATA,sha256=Qqe_PIlPIQt1vy2rup3JD0DixWGnpe7iMVqsgwyCHns,5883
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+ nmdc_schema-11.14.0.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
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+ nmdc_schema-11.14.0.dist-info/entry_points.txt,sha256=ioyD5P6op5Zy68bqg5MafLAryb73rfzyx8YXKItroC8,1531
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+ nmdc_schema-11.14.0.dist-info/licenses/LICENSE,sha256=ogEPNDSH0_dhiv_lT3ifVIdgIzHAqNA_SemnxUfPBJk,7048
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+ nmdc_schema-11.14.0.dist-info/RECORD,,
@@ -22,12 +22,4 @@ schema-pattern-linting=src.scripts.schema_pattern_linting:main
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  schema-view-relation-graph=src.scripts.schema_view_relation_graph:cli
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  scrutinize-elements=src.scripts.scrutinize_elements:process_schema_elements
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  slot-range-type-reporter=src.scripts.slot_range_type_reporter:cli
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- units-mongodb-analyze=units.scripts.mongodb_analyze_units:main
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- units-schema-convert=units.scripts.schema_convert_to_ucum:main
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- units-schema-extract=units.scripts.schema_extract_preferred_units:main
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- units-schema-extract-slot-unit-pairs=units.scripts.schema_expand_storage_units:main
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- units-schema-generate=units.scripts.schema_generate_yq_commands:main
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- units-testdata-check=units.scripts.testdata_check_has_unit:main
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- units-testdata-extract=units.scripts.testdata_extract_quantity_values:main
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- units-ucum-validate=units.scripts.ucum_validate_units:main
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