nmdc-schema 11.12.1__py3-none-any.whl → 11.14.0__py3-none-any.whl

nmdc_schema/nmdc_materialized_patterns.schema.json

@@ -1301,6 +1301,13 @@
                         "null"
                     ]
                 },
+                "ecosystem_path_id": {
+                    "description": "A unique id representing the GOLD classifiers associated with a sample.",
+                    "type": [
+                        "integer",
+                        "null"
+                    ]
+                },
                 "ecosystem_subtype": {
                     "description": "Ecosystem subtypes represent further subdivision of Ecosystem types into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD path.",
                     "type": [
@@ -2257,7 +2264,7 @@
                 "igsn_biosample_identifiers": {
                     "description": "A list of identifiers for the biosample from the IGSN database.",
                     "items": {
-                        "pattern": "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$",
+                        "pattern": "^igsn:[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$",
                         "type": "string"
                     },
                     "type": [
@@ -2649,7 +2656,7 @@
                     ]
                 },
                 "misc_param": {
-                    "description": "Structured miscellaneous property assertions for this Biosample. Use when a value cannot cleanly fit an existing, policy-governed slot.",
+                    "description": "Structured miscellaneous property assertions. Use when a value cannot cleanly fit an existing, policy-governed slot.",
                     "items": {
                         "$ref": "#/$defs/PropertyAssertion"
                     },
@@ -3275,6 +3282,17 @@
                         "null"
                     ]
                 },
+                "provenance_metadata": {
+                    "anyOf": [
+                        {
+                            "$ref": "#/$defs/ProvenanceMetadata"
+                        },
+                        {
+                            "type": "null"
+                        }
+                    ],
+                    "description": "Provides information about the provenance of a record."
+                },
                 "quad_pos": {
                     "$ref": "#/$defs/QuadPosEnum",
                     "description": "The quadrant position of the sampling room within the building"
@@ -3350,7 +3368,7 @@
                 "replicate_number": {
                     "description": "If sending biological replicates, indicate the rep number here.",
                     "type": [
-                        "string",
+                        "integer",
                         "null"
                     ]
                 },
@@ -3915,7 +3933,7 @@
                     ]
                 },
                 "sample_shipped": {
-                    "description": "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample sent to EMSL.",
+                    "description": "The total amount or size (volume, mass, or area) of sample sent to EMSL.",
                     "type": [
                         "string",
                         "null"
@@ -4474,7 +4492,7 @@
                 "technical_reps": {
                     "description": "If sending technical replicates of the same sample, indicate the replicate count.",
                     "type": [
-                        "string",
+                        "integer",
                         "null"
                     ]
                 },
@@ -5587,102 +5605,6 @@
             "title": "ChemicalConversionProcess",
             "type": "object"
         },
-        "ChemicalEntity": {
-            "additionalProperties": false,
-            "description": "An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states. A chemical entity is a  physical entity that pertains to chemistry or biochemistry.",
-            "properties": {
-                "alternative_identifiers": {
-                    "description": "A list of alternative identifiers for the entity.",
-                    "items": {
-                        "pattern": "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,\\(\\)\\=\\#]*$",
-                        "type": "string"
-                    },
-                    "type": [
-                        "array",
-                        "null"
-                    ]
-                },
-                "alternative_names": {
-                    "description": "A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific.  This should not be used for identifers which have their own slots (e.g., bioproject:PRJNA406974)",
-                    "items": {
-                        "type": "string"
-                    },
-                    "type": [
-                        "array",
-                        "null"
-                    ]
-                },
-                "chemical_formula": {
-                    "description": "A generic grouping for molecular formulae and empirical formulae",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "definition": {
-                    "description": "The definition of the ontology term as provided by the ontology.",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "description": {
-                    "description": "a human-readable description of a thing",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "id": {
-                    "description": "A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI",
-                    "pattern": "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$",
-                    "type": "string"
-                },
-                "is_obsolete": {
-                    "description": "A boolean value indicating whether the ontology term is obsolete.",
-                    "type": [
-                        "boolean",
-                        "null"
-                    ]
-                },
-                "is_root": {
-                    "description": "A boolean value indicating whether the ontology term is a root term; it is not a subclass of  any other term.",
-                    "type": [
-                        "boolean",
-                        "null"
-                    ]
-                },
-                "name": {
-                    "description": "A human readable label for an entity",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "relations": {
-                    "items": {
-                        "$ref": "#/$defs/OntologyRelation"
-                    },
-                    "type": [
-                        "array",
-                        "null"
-                    ]
-                },
-                "type": {
-                    "description": "the class_uri of the class that has been instantiated",
-                    "enum": [
-                        "nmdc:ChemicalEntity"
-                    ],
-                    "type": "string"
-                }
-            },
-            "required": [
-                "id",
-                "type"
-            ],
-            "title": "ChemicalEntity",
-            "type": "object"
-        },
         "ChemicalEntityEnum": {
             "description": "",
             "enum": [
@@ -6114,9 +6036,6 @@
                         {
                             "$ref": "#/$defs/EnvironmentalMaterialTerm"
                         },
-                        {
-                            "$ref": "#/$defs/ChemicalEntity"
-                        },
                         {
                             "$ref": "#/$defs/Pathway"
                         },
@@ -6160,9 +6079,6 @@
                         {
                             "$ref": "#/$defs/EnvironmentalMaterialTerm"
                         },
-                        {
-                            "$ref": "#/$defs/ChemicalEntity"
-                        },
                         {
                             "$ref": "#/$defs/Pathway"
                         },
@@ -6371,6 +6287,13 @@
                     "description": "A human readable label for an entity",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -7734,6 +7657,9 @@
                 "Kraken2 Classification Report",
                 "Kraken2 Taxonomic Classification",
                 "Centrifuge Taxonomic Classification",
+                "SingleM Taxonomic Classification",
+                "SingleM Krona Plot",
+                "SingleM Clustered Report",
                 "Structural Annotation GFF",
                 "Structural Annotation Stats Json",
                 "Functional Annotation GFF",
@@ -8604,6 +8530,7 @@
                 "orbitrap_eclipse_tribid",
                 "orbitrap_q_exactive",
                 "orbitrap_iqx_tribrid",
+                "orbitrap_exploris_120",
                 "solarix_7T",
                 "solarix_12T",
                 "solarix_15T",
@@ -9182,7 +9109,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -9306,6 +9233,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmag-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "too_short_contig_num": {
                     "description": "Number of contigs which were excluded from binning for length.",
                     "minimum": 0,
@@ -9962,7 +9897,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -10061,6 +9996,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmb-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -10198,7 +10141,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "gold_analysis_project_identifiers": {
@@ -10307,6 +10250,13 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -10516,7 +10466,7 @@
                     ]
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -10553,9 +10503,12 @@
                     "type": "string"
                 },
                 "insdc_assembly_identifiers": {
-                    "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                    "items": {
+                        "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                        "type": "string"
+                    },
                     "type": [
-                        "string",
+                        "array",
                         "null"
                     ]
                 },
@@ -10707,6 +10660,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmgas-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -10825,7 +10786,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -10915,6 +10876,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmp-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -11043,7 +11012,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "gold_analysis_project_identifiers": {
@@ -11152,6 +11121,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmtan-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -11361,7 +11338,7 @@
                     ]
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -11398,9 +11375,12 @@
                     "type": "string"
                 },
                 "insdc_assembly_identifiers": {
-                    "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                    "items": {
+                        "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                        "type": "string"
+                    },
                     "type": [
-                        "string",
+                        "array",
                         "null"
                     ]
                 },
@@ -11552,6 +11532,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmtas-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -11670,7 +11658,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -11768,6 +11756,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmtex-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -12077,7 +12073,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -12163,6 +12159,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfnom-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -13103,7 +13107,8 @@
                         {
                             "type": "null"
                         }
-                    ]
+                    ],
+                    "description": "A measure of the purity of a biomaterial sample"
                 },
                 "description": {
                     "description": "a human-readable description of a thing",
@@ -13402,6 +13407,42 @@
             "title": "ProtocolForEnum",
             "type": "string"
         },
+        "ProvenanceMetadata": {
+            "additionalProperties": false,
+            "description": "Metadata pertaining to how a record was created.",
+            "properties": {
+                "git_url": {
+                    "description": "The url of the software repository used to generate the NMDC metadata record",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "source_system_of_record": {
+                    "$ref": "#/$defs/SourceSystemEnum",
+                    "description": "Identifies the system of origin for a record"
+                },
+                "type": {
+                    "description": "the class_uri of the class that has been instantiated",
+                    "enum": [
+                        "nmdc:ProvenanceMetadata"
+                    ],
+                    "type": "string"
+                },
+                "version": {
+                    "description": "The version tag of the software used to generate the NMDC metadata record",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                }
+            },
+            "required": [
+                "type"
+            ],
+            "title": "ProvenanceMetadata",
+            "type": "object"
+        },
         "QuadPosEnum": {
             "description": "",
             "enum": [
@@ -13547,7 +13588,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -13633,6 +13674,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfrbt-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -13751,7 +13800,7 @@
                     "description": "The computing resource or facility where the workflow was executed."
                 },
                 "git_url": {
-                    "description": "The url that points to the exact github location of a workflow.",
+                    "description": "The url that points to the exact software repository location used to run a workflow",
                     "type": "string"
                 },
                 "has_failure_categorization": {
@@ -13879,6 +13928,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfrqc-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -14225,6 +14282,18 @@
             "title": "SoilHorizonEnum",
             "type": "string"
         },
+        "SourceSystemEnum": {
+            "description": "",
+            "enum": [
+                "NMDC_Submission_Portal",
+                "GOLD",
+                "NEON_Data_Portal",
+                "NCBI",
+                "custom"
+            ],
+            "title": "SourceSystemEnum",
+            "type": "string"
+        },
         "SpecificEnum": {
             "description": "",
             "enum": [
@@ -14776,7 +14845,7 @@
                     ]
                 },
                 "title": {
-                    "description": "A name given to the entity that differs from the name/label programmatically assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study.",
+                    "description": "A name given to the entity that differs from the name/label programmatically assigned to it.",
                     "type": [
                         "string",
                         "null"
@@ -15011,11 +15080,9 @@
             "enum": [
                 "InProgress",
                 "SubmittedPendingReview",
-                "ResubmittedPendingReview",
                 "ApprovedHeld",
-                "PendingUserFacility",
+                "ApprovedPendingUserFacility",
                 "UpdatesRequired",
-                "InProgressUpdate",
                 "Denied",
                 "Released"
             ],
@@ -15299,6 +15366,7 @@
                 "sr",
                 "Hz",
                 "1/d",
+                "1/[sft_i]",
                 "kHz",
                 "MHz",
                 "GHz",
@@ -15809,5 +15877,6 @@
     },
     "title": "NMDC",
     "type": "object",
-    "version": "11.12.1"
+    "version": "11.14.0"
 }
+