niwrap-mrtrix 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_mrtrix/mrtrix/tsfmult.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 TSFMULT_METADATA = Metadata(
-    id="105c8e8f8aa0ac88867d8e13a902f5ea3d4b3545.boutiques",
+    id="e103c6aff1dbf08096f6707a523cbafcb15a4c92.boutiques",
     name="tsfmult",
     package="mrtrix",
     container_image_tag="mrtrix3/mrtrix3:3.0.4",
@@ -14,14 +14,32 @@ TSFMULT_METADATA = Metadata(
 
 
 TsfmultConfigParameters = typing.TypedDict('TsfmultConfigParameters', {
-    "__STYXTYPE__": typing.Literal["config"],
+    "@type": typing.NotRequired[typing.Literal["config"]],
+    "key": str,
+    "value": str,
+})
+TsfmultConfigParametersTagged = typing.TypedDict('TsfmultConfigParametersTagged', {
+    "@type": typing.Literal["config"],
     "key": str,
     "value": str,
 })
 
 
 TsfmultParameters = typing.TypedDict('TsfmultParameters', {
-    "__STYXTYPE__": typing.Literal["tsfmult"],
+    "@type": typing.NotRequired[typing.Literal["mrtrix/tsfmult"]],
+    "info": bool,
+    "quiet": bool,
+    "debug": bool,
+    "force": bool,
+    "nthreads": typing.NotRequired[int | None],
+    "config": typing.NotRequired[list[TsfmultConfigParameters] | None],
+    "help": bool,
+    "version": bool,
+    "input1": InputPathType,
+    "output": str,
+})
+TsfmultParametersTagged = typing.TypedDict('TsfmultParametersTagged', {
+    "@type": typing.Literal["mrtrix/tsfmult"],
     "info": bool,
     "quiet": bool,
     "debug": bool,
@@ -33,45 +51,12 @@ TsfmultParameters = typing.TypedDict('TsfmultParameters', {
     "input1": InputPathType,
     "output": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "tsfmult": tsfmult_cargs,
-        "config": tsfmult_config_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "tsfmult": tsfmult_outputs,
-    }.get(t)
 
 
 def tsfmult_config_params(
     key: str,
     value: str,
-) -> TsfmultConfigParameters:
+) -> TsfmultConfigParametersTagged:
     """
     Build parameters.
     
@@ -82,7 +67,7 @@ def tsfmult_config_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "config",
+        "@type": "config",
         "key": key,
         "value": value,
     }
@@ -104,14 +89,14 @@ def tsfmult_config_cargs(
     """
     cargs = []
     cargs.append("-config")
-    cargs.append(params.get("key"))
-    cargs.append(params.get("value"))
+    cargs.append(params.get("key", None))
+    cargs.append(params.get("value", None))
     return cargs
 
 
 class TsfmultOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `tsfmult(...)`.
+    Output object returned when calling `TsfmultParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -130,7 +115,7 @@ def tsfmult_params(
     config: list[TsfmultConfigParameters] | None = None,
     help_: bool = False,
     version: bool = False,
-) -> TsfmultParameters:
+) -> TsfmultParametersTagged:
     """
     Build parameters.
     
@@ -153,7 +138,7 @@ def tsfmult_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "tsfmult",
+        "@type": "mrtrix/tsfmult",
         "info": info,
         "quiet": quiet,
         "debug": debug,
@@ -185,27 +170,27 @@ def tsfmult_cargs(
     """
     cargs = []
     cargs.append("tsfmult")
-    if params.get("info"):
+    if params.get("info", False):
         cargs.append("-info")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("debug"):
+    if params.get("debug", False):
         cargs.append("-debug")
-    if params.get("force"):
+    if params.get("force", False):
         cargs.append("-force")
-    if params.get("nthreads") is not None:
+    if params.get("nthreads", None) is not None:
         cargs.extend([
             "-nthreads",
-            str(params.get("nthreads"))
+            str(params.get("nthreads", None))
         ])
-    if params.get("config") is not None:
-        cargs.extend([a for c in [dyn_cargs(s["__STYXTYPE__"])(s, execution) for s in params.get("config")] for a in c])
-    if params.get("help"):
+    if params.get("config", None) is not None:
+        cargs.extend([a for c in [tsfmult_config_cargs(s, execution) for s in params.get("config", None)] for a in c])
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-version")
-    cargs.append(execution.input_file(params.get("input1")))
-    cargs.append(params.get("output"))
+    cargs.append(execution.input_file(params.get("input1", None)))
+    cargs.append(params.get("output", None))
     return cargs
 
 
@@ -224,16 +209,18 @@ def tsfmult_outputs(
     """
     ret = TsfmultOutputs(
         root=execution.output_file("."),
-        output=execution.output_file(params.get("output")),
+        output=execution.output_file(params.get("output", None)),
     )
     return ret
 
 
 def tsfmult_execute(
     params: TsfmultParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> TsfmultOutputs:
     """
+    tsfmult
+    
     Multiply corresponding values in track scalar files.
     
     
@@ -248,10 +235,12 @@ def tsfmult_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `TsfmultOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(TSFMULT_METADATA)
     params = execution.params(params)
     cargs = tsfmult_cargs(params, execution)
     ret = tsfmult_outputs(params, execution)
@@ -273,6 +262,8 @@ def tsfmult(
     runner: Runner | None = None,
 ) -> TsfmultOutputs:
     """
+    tsfmult
+    
     Multiply corresponding values in track scalar files.
     
     
@@ -304,8 +295,6 @@ def tsfmult(
     Returns:
         NamedTuple of outputs (described in `TsfmultOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(TSFMULT_METADATA)
     params = tsfmult_params(
         info=info,
         quiet=quiet,
@@ -318,15 +307,14 @@ def tsfmult(
         input1=input1,
         output=output,
     )
-    return tsfmult_execute(params, execution)
+    return tsfmult_execute(params, runner)
 
 
 __all__ = [
     "TSFMULT_METADATA",
-    "TsfmultConfigParameters",
     "TsfmultOutputs",
-    "TsfmultParameters",
     "tsfmult",
     "tsfmult_config_params",
+    "tsfmult_execute",
     "tsfmult_params",
 ]

niwrap_mrtrix/mrtrix/tsfsmooth.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 TSFSMOOTH_METADATA = Metadata(
-    id="661247ae56de33473ab1fe1198f8ec8b74b835b5.boutiques",
+    id="a24677b3a0e32a059af6e1aaa2200e029ee94f11.boutiques",
     name="tsfsmooth",
     package="mrtrix",
     container_image_tag="mrtrix3/mrtrix3:3.0.4",
@@ -14,14 +14,33 @@ TSFSMOOTH_METADATA = Metadata(
 
 
 TsfsmoothConfigParameters = typing.TypedDict('TsfsmoothConfigParameters', {
-    "__STYXTYPE__": typing.Literal["config"],
+    "@type": typing.NotRequired[typing.Literal["config"]],
+    "key": str,
+    "value": str,
+})
+TsfsmoothConfigParametersTagged = typing.TypedDict('TsfsmoothConfigParametersTagged', {
+    "@type": typing.Literal["config"],
     "key": str,
     "value": str,
 })
 
 
 TsfsmoothParameters = typing.TypedDict('TsfsmoothParameters', {
-    "__STYXTYPE__": typing.Literal["tsfsmooth"],
+    "@type": typing.NotRequired[typing.Literal["mrtrix/tsfsmooth"]],
+    "stdev": typing.NotRequired[float | None],
+    "info": bool,
+    "quiet": bool,
+    "debug": bool,
+    "force": bool,
+    "nthreads": typing.NotRequired[int | None],
+    "config": typing.NotRequired[list[TsfsmoothConfigParameters] | None],
+    "help": bool,
+    "version": bool,
+    "input": InputPathType,
+    "output": str,
+})
+TsfsmoothParametersTagged = typing.TypedDict('TsfsmoothParametersTagged', {
+    "@type": typing.Literal["mrtrix/tsfsmooth"],
     "stdev": typing.NotRequired[float | None],
     "info": bool,
     "quiet": bool,
@@ -34,45 +53,12 @@ TsfsmoothParameters = typing.TypedDict('TsfsmoothParameters', {
     "input": InputPathType,
     "output": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "tsfsmooth": tsfsmooth_cargs,
-        "config": tsfsmooth_config_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "tsfsmooth": tsfsmooth_outputs,
-    }.get(t)
 
 
 def tsfsmooth_config_params(
     key: str,
     value: str,
-) -> TsfsmoothConfigParameters:
+) -> TsfsmoothConfigParametersTagged:
     """
     Build parameters.
     
@@ -83,7 +69,7 @@ def tsfsmooth_config_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "config",
+        "@type": "config",
         "key": key,
         "value": value,
     }
@@ -105,14 +91,14 @@ def tsfsmooth_config_cargs(
     """
     cargs = []
     cargs.append("-config")
-    cargs.append(params.get("key"))
-    cargs.append(params.get("value"))
+    cargs.append(params.get("key", None))
+    cargs.append(params.get("value", None))
     return cargs
 
 
 class TsfsmoothOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `tsfsmooth(...)`.
+    Output object returned when calling `TsfsmoothParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -132,7 +118,7 @@ def tsfsmooth_params(
     config: list[TsfsmoothConfigParameters] | None = None,
     help_: bool = False,
     version: bool = False,
-) -> TsfsmoothParameters:
+) -> TsfsmoothParametersTagged:
     """
     Build parameters.
     
@@ -157,7 +143,7 @@ def tsfsmooth_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "tsfsmooth",
+        "@type": "mrtrix/tsfsmooth",
         "info": info,
         "quiet": quiet,
         "debug": debug,
@@ -191,32 +177,32 @@ def tsfsmooth_cargs(
     """
     cargs = []
     cargs.append("tsfsmooth")
-    if params.get("stdev") is not None:
+    if params.get("stdev", None) is not None:
         cargs.extend([
             "-stdev",
-            str(params.get("stdev"))
+            str(params.get("stdev", None))
         ])
-    if params.get("info"):
+    if params.get("info", False):
         cargs.append("-info")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("debug"):
+    if params.get("debug", False):
         cargs.append("-debug")
-    if params.get("force"):
+    if params.get("force", False):
         cargs.append("-force")
-    if params.get("nthreads") is not None:
+    if params.get("nthreads", None) is not None:
         cargs.extend([
             "-nthreads",
-            str(params.get("nthreads"))
+            str(params.get("nthreads", None))
         ])
-    if params.get("config") is not None:
-        cargs.extend([a for c in [dyn_cargs(s["__STYXTYPE__"])(s, execution) for s in params.get("config")] for a in c])
-    if params.get("help"):
+    if params.get("config", None) is not None:
+        cargs.extend([a for c in [tsfsmooth_config_cargs(s, execution) for s in params.get("config", None)] for a in c])
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-version")
-    cargs.append(execution.input_file(params.get("input")))
-    cargs.append(params.get("output"))
+    cargs.append(execution.input_file(params.get("input", None)))
+    cargs.append(params.get("output", None))
     return cargs
 
 
@@ -235,16 +221,18 @@ def tsfsmooth_outputs(
     """
     ret = TsfsmoothOutputs(
         root=execution.output_file("."),
-        output=execution.output_file(params.get("output")),
+        output=execution.output_file(params.get("output", None)),
     )
     return ret
 
 
 def tsfsmooth_execute(
     params: TsfsmoothParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> TsfsmoothOutputs:
     """
+    tsfsmooth
+    
     Gaussian filter a track scalar file.
     
     
@@ -259,10 +247,12 @@ def tsfsmooth_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `TsfsmoothOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(TSFSMOOTH_METADATA)
     params = execution.params(params)
     cargs = tsfsmooth_cargs(params, execution)
     ret = tsfsmooth_outputs(params, execution)
@@ -285,6 +275,8 @@ def tsfsmooth(
     runner: Runner | None = None,
 ) -> TsfsmoothOutputs:
     """
+    tsfsmooth
+    
     Gaussian filter a track scalar file.
     
     
@@ -318,8 +310,6 @@ def tsfsmooth(
     Returns:
         NamedTuple of outputs (described in `TsfsmoothOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(TSFSMOOTH_METADATA)
     params = tsfsmooth_params(
         stdev=stdev,
         info=info,
@@ -333,15 +323,14 @@ def tsfsmooth(
         input_=input_,
         output=output,
     )
-    return tsfsmooth_execute(params, execution)
+    return tsfsmooth_execute(params, runner)
 
 
 __all__ = [
     "TSFSMOOTH_METADATA",
-    "TsfsmoothConfigParameters",
     "TsfsmoothOutputs",
-    "TsfsmoothParameters",
     "tsfsmooth",
     "tsfsmooth_config_params",
+    "tsfsmooth_execute",
     "tsfsmooth_params",
 ]