niwrap-mrtrix 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_mrtrix/mrtrix/mraverageheader.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 MRAVERAGEHEADER_METADATA = Metadata(
-    id="fd2f9326c744f341eb6c33d25cde30666d1d4b4f.boutiques",
+    id="157f0794eeda94318eeaa422b5298c388c67f70c.boutiques",
     name="mraverageheader",
     package="mrtrix",
     container_image_tag="mrtrix3/mrtrix3:3.0.4",
@@ -14,14 +14,36 @@ MRAVERAGEHEADER_METADATA = Metadata(
 
 
 MraverageheaderConfigParameters = typing.TypedDict('MraverageheaderConfigParameters', {
-    "__STYXTYPE__": typing.Literal["config"],
+    "@type": typing.NotRequired[typing.Literal["config"]],
+    "key": str,
+    "value": str,
+})
+MraverageheaderConfigParametersTagged = typing.TypedDict('MraverageheaderConfigParametersTagged', {
+    "@type": typing.Literal["config"],
     "key": str,
     "value": str,
 })
 
 
 MraverageheaderParameters = typing.TypedDict('MraverageheaderParameters', {
-    "__STYXTYPE__": typing.Literal["mraverageheader"],
+    "@type": typing.NotRequired[typing.Literal["mrtrix/mraverageheader"]],
+    "padding": typing.NotRequired[float | None],
+    "resolution": typing.NotRequired[str | None],
+    "fill": bool,
+    "datatype": typing.NotRequired[str | None],
+    "info": bool,
+    "quiet": bool,
+    "debug": bool,
+    "force": bool,
+    "nthreads": typing.NotRequired[int | None],
+    "config": typing.NotRequired[list[MraverageheaderConfigParameters] | None],
+    "help": bool,
+    "version": bool,
+    "input": list[InputPathType],
+    "output": str,
+})
+MraverageheaderParametersTagged = typing.TypedDict('MraverageheaderParametersTagged', {
+    "@type": typing.Literal["mrtrix/mraverageheader"],
     "padding": typing.NotRequired[float | None],
     "resolution": typing.NotRequired[str | None],
     "fill": bool,
@@ -37,45 +59,12 @@ MraverageheaderParameters = typing.TypedDict('MraverageheaderParameters', {
     "input": list[InputPathType],
     "output": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "mraverageheader": mraverageheader_cargs,
-        "config": mraverageheader_config_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "mraverageheader": mraverageheader_outputs,
-    }.get(t)
 
 
 def mraverageheader_config_params(
     key: str,
     value: str,
-) -> MraverageheaderConfigParameters:
+) -> MraverageheaderConfigParametersTagged:
     """
     Build parameters.
     
@@ -86,7 +75,7 @@ def mraverageheader_config_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "config",
+        "@type": "config",
         "key": key,
         "value": value,
     }
@@ -108,14 +97,14 @@ def mraverageheader_config_cargs(
     """
     cargs = []
     cargs.append("-config")
-    cargs.append(params.get("key"))
-    cargs.append(params.get("value"))
+    cargs.append(params.get("key", None))
+    cargs.append(params.get("value", None))
     return cargs
 
 
 class MraverageheaderOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `mraverageheader(...)`.
+    Output object returned when calling `MraverageheaderParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -138,7 +127,7 @@ def mraverageheader_params(
     config: list[MraverageheaderConfigParameters] | None = None,
     help_: bool = False,
     version: bool = False,
-) -> MraverageheaderParameters:
+) -> MraverageheaderParametersTagged:
     """
     Build parameters.
     
@@ -173,7 +162,7 @@ def mraverageheader_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "mraverageheader",
+        "@type": "mrtrix/mraverageheader",
         "fill": fill,
         "info": info,
         "quiet": quiet,
@@ -212,44 +201,44 @@ def mraverageheader_cargs(
     """
     cargs = []
     cargs.append("mraverageheader")
-    if params.get("padding") is not None:
+    if params.get("padding", None) is not None:
         cargs.extend([
             "-padding",
-            str(params.get("padding"))
+            str(params.get("padding", None))
         ])
-    if params.get("resolution") is not None:
+    if params.get("resolution", None) is not None:
         cargs.extend([
             "-resolution",
-            params.get("resolution")
+            params.get("resolution", None)
         ])
-    if params.get("fill"):
+    if params.get("fill", False):
         cargs.append("-fill")
-    if params.get("datatype") is not None:
+    if params.get("datatype", None) is not None:
         cargs.extend([
             "-datatype",
-            params.get("datatype")
+            params.get("datatype", None)
         ])
-    if params.get("info"):
+    if params.get("info", False):
         cargs.append("-info")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("debug"):
+    if params.get("debug", False):
         cargs.append("-debug")
-    if params.get("force"):
+    if params.get("force", False):
         cargs.append("-force")
-    if params.get("nthreads") is not None:
+    if params.get("nthreads", None) is not None:
         cargs.extend([
             "-nthreads",
-            str(params.get("nthreads"))
+            str(params.get("nthreads", None))
         ])
-    if params.get("config") is not None:
-        cargs.extend([a for c in [dyn_cargs(s["__STYXTYPE__"])(s, execution) for s in params.get("config")] for a in c])
-    if params.get("help"):
+    if params.get("config", None) is not None:
+        cargs.extend([a for c in [mraverageheader_config_cargs(s, execution) for s in params.get("config", None)] for a in c])
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-version")
-    cargs.extend([execution.input_file(f) for f in params.get("input")])
-    cargs.append(params.get("output"))
+    cargs.extend([execution.input_file(f) for f in params.get("input", None)])
+    cargs.append(params.get("output", None))
     return cargs
 
 
@@ -268,16 +257,18 @@ def mraverageheader_outputs(
     """
     ret = MraverageheaderOutputs(
         root=execution.output_file("."),
-        output=execution.output_file(params.get("output")),
+        output=execution.output_file(params.get("output", None)),
     )
     return ret
 
 
 def mraverageheader_execute(
     params: MraverageheaderParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> MraverageheaderOutputs:
     """
+    mraverageheader
+    
     Calculate the average (unbiased) coordinate space of all input images.
     
     
@@ -292,10 +283,12 @@ def mraverageheader_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `MraverageheaderOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(MRAVERAGEHEADER_METADATA)
     params = execution.params(params)
     cargs = mraverageheader_cargs(params, execution)
     ret = mraverageheader_outputs(params, execution)
@@ -321,6 +314,8 @@ def mraverageheader(
     runner: Runner | None = None,
 ) -> MraverageheaderOutputs:
     """
+    mraverageheader
+    
     Calculate the average (unbiased) coordinate space of all input images.
     
     
@@ -364,8 +359,6 @@ def mraverageheader(
     Returns:
         NamedTuple of outputs (described in `MraverageheaderOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(MRAVERAGEHEADER_METADATA)
     params = mraverageheader_params(
         padding=padding,
         resolution=resolution,
@@ -382,15 +375,14 @@ def mraverageheader(
         input_=input_,
         output=output,
     )
-    return mraverageheader_execute(params, execution)
+    return mraverageheader_execute(params, runner)
 
 
 __all__ = [
     "MRAVERAGEHEADER_METADATA",
-    "MraverageheaderConfigParameters",
     "MraverageheaderOutputs",
-    "MraverageheaderParameters",
     "mraverageheader",
     "mraverageheader_config_params",
+    "mraverageheader_execute",
     "mraverageheader_params",
 ]