niwrap-mrtrix 0.6.2__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_mrtrix/mrtrix/tsfdivide.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 TSFDIVIDE_METADATA = Metadata(
-    id="73b4285cd16d7ecd5b79ccc7ed4dd1e67b62377d.boutiques",
+    id="6ee933964de2557d8a0e6e587b41c3c00d890366.boutiques",
     name="tsfdivide",
     package="mrtrix",
     container_image_tag="mrtrix3/mrtrix3:3.0.4",
@@ -14,14 +14,33 @@ TSFDIVIDE_METADATA = Metadata(
 
 
 TsfdivideConfigParameters = typing.TypedDict('TsfdivideConfigParameters', {
-    "__STYXTYPE__": typing.Literal["config"],
+    "@type": typing.NotRequired[typing.Literal["config"]],
+    "key": str,
+    "value": str,
+})
+TsfdivideConfigParametersTagged = typing.TypedDict('TsfdivideConfigParametersTagged', {
+    "@type": typing.Literal["config"],
     "key": str,
     "value": str,
 })
 
 
 TsfdivideParameters = typing.TypedDict('TsfdivideParameters', {
-    "__STYXTYPE__": typing.Literal["tsfdivide"],
+    "@type": typing.NotRequired[typing.Literal["mrtrix/tsfdivide"]],
+    "info": bool,
+    "quiet": bool,
+    "debug": bool,
+    "force": bool,
+    "nthreads": typing.NotRequired[int | None],
+    "config": typing.NotRequired[list[TsfdivideConfigParameters] | None],
+    "help": bool,
+    "version": bool,
+    "input1": InputPathType,
+    "input2": InputPathType,
+    "output": str,
+})
+TsfdivideParametersTagged = typing.TypedDict('TsfdivideParametersTagged', {
+    "@type": typing.Literal["mrtrix/tsfdivide"],
     "info": bool,
     "quiet": bool,
     "debug": bool,
@@ -34,45 +53,12 @@ TsfdivideParameters = typing.TypedDict('TsfdivideParameters', {
     "input2": InputPathType,
     "output": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "tsfdivide": tsfdivide_cargs,
-        "config": tsfdivide_config_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "tsfdivide": tsfdivide_outputs,
-    }.get(t)
 
 
 def tsfdivide_config_params(
     key: str,
     value: str,
-) -> TsfdivideConfigParameters:
+) -> TsfdivideConfigParametersTagged:
     """
     Build parameters.
     
@@ -83,7 +69,7 @@ def tsfdivide_config_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "config",
+        "@type": "config",
         "key": key,
         "value": value,
     }
@@ -105,14 +91,14 @@ def tsfdivide_config_cargs(
     """
     cargs = []
     cargs.append("-config")
-    cargs.append(params.get("key"))
-    cargs.append(params.get("value"))
+    cargs.append(params.get("key", None))
+    cargs.append(params.get("value", None))
     return cargs
 
 
 class TsfdivideOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `tsfdivide(...)`.
+    Output object returned when calling `TsfdivideParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -132,7 +118,7 @@ def tsfdivide_params(
     config: list[TsfdivideConfigParameters] | None = None,
     help_: bool = False,
     version: bool = False,
-) -> TsfdivideParameters:
+) -> TsfdivideParametersTagged:
     """
     Build parameters.
     
@@ -156,7 +142,7 @@ def tsfdivide_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "tsfdivide",
+        "@type": "mrtrix/tsfdivide",
         "info": info,
         "quiet": quiet,
         "debug": debug,
@@ -189,28 +175,28 @@ def tsfdivide_cargs(
     """
     cargs = []
     cargs.append("tsfdivide")
-    if params.get("info"):
+    if params.get("info", False):
         cargs.append("-info")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("debug"):
+    if params.get("debug", False):
         cargs.append("-debug")
-    if params.get("force"):
+    if params.get("force", False):
         cargs.append("-force")
-    if params.get("nthreads") is not None:
+    if params.get("nthreads", None) is not None:
         cargs.extend([
             "-nthreads",
-            str(params.get("nthreads"))
+            str(params.get("nthreads", None))
         ])
-    if params.get("config") is not None:
-        cargs.extend([a for c in [dyn_cargs(s["__STYXTYPE__"])(s, execution) for s in params.get("config")] for a in c])
-    if params.get("help"):
+    if params.get("config", None) is not None:
+        cargs.extend([a for c in [tsfdivide_config_cargs(s, execution) for s in params.get("config", None)] for a in c])
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-version")
-    cargs.append(execution.input_file(params.get("input1")))
-    cargs.append(execution.input_file(params.get("input2")))
-    cargs.append(params.get("output"))
+    cargs.append(execution.input_file(params.get("input1", None)))
+    cargs.append(execution.input_file(params.get("input2", None)))
+    cargs.append(params.get("output", None))
     return cargs
 
 
@@ -229,16 +215,18 @@ def tsfdivide_outputs(
     """
     ret = TsfdivideOutputs(
         root=execution.output_file("."),
-        output=execution.output_file(params.get("output")),
+        output=execution.output_file(params.get("output", None)),
     )
     return ret
 
 
 def tsfdivide_execute(
     params: TsfdivideParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> TsfdivideOutputs:
     """
+    tsfdivide
+    
     Divide corresponding values in track scalar files.
     
     
@@ -253,10 +241,12 @@ def tsfdivide_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `TsfdivideOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(TSFDIVIDE_METADATA)
     params = execution.params(params)
     cargs = tsfdivide_cargs(params, execution)
     ret = tsfdivide_outputs(params, execution)
@@ -279,6 +269,8 @@ def tsfdivide(
     runner: Runner | None = None,
 ) -> TsfdivideOutputs:
     """
+    tsfdivide
+    
     Divide corresponding values in track scalar files.
     
     
@@ -311,8 +303,6 @@ def tsfdivide(
     Returns:
         NamedTuple of outputs (described in `TsfdivideOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(TSFDIVIDE_METADATA)
     params = tsfdivide_params(
         info=info,
         quiet=quiet,
@@ -326,15 +316,14 @@ def tsfdivide(
         input2=input2,
         output=output,
     )
-    return tsfdivide_execute(params, execution)
+    return tsfdivide_execute(params, runner)
 
 
 __all__ = [
     "TSFDIVIDE_METADATA",
-    "TsfdivideConfigParameters",
     "TsfdivideOutputs",
-    "TsfdivideParameters",
     "tsfdivide",
     "tsfdivide_config_params",
+    "tsfdivide_execute",
     "tsfdivide_params",
 ]

niwrap_mrtrix/mrtrix/tsfinfo.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 TSFINFO_METADATA = Metadata(
-    id="45e3911b111372c34cdd626a6ab7dceee95afdc9.boutiques",
+    id="84b05c3ebf8c8a54423a79c4d7fe8735d30e4fff.boutiques",
     name="tsfinfo",
     package="mrtrix",
     container_image_tag="mrtrix3/mrtrix3:3.0.4",
@@ -14,14 +14,33 @@ TSFINFO_METADATA = Metadata(
 
 
 TsfinfoConfigParameters = typing.TypedDict('TsfinfoConfigParameters', {
-    "__STYXTYPE__": typing.Literal["config"],
+    "@type": typing.NotRequired[typing.Literal["config"]],
+    "key": str,
+    "value": str,
+})
+TsfinfoConfigParametersTagged = typing.TypedDict('TsfinfoConfigParametersTagged', {
+    "@type": typing.Literal["config"],
     "key": str,
     "value": str,
 })
 
 
 TsfinfoParameters = typing.TypedDict('TsfinfoParameters', {
-    "__STYXTYPE__": typing.Literal["tsfinfo"],
+    "@type": typing.NotRequired[typing.Literal["mrtrix/tsfinfo"]],
+    "count": bool,
+    "ascii": typing.NotRequired[str | None],
+    "info": bool,
+    "quiet": bool,
+    "debug": bool,
+    "force": bool,
+    "nthreads": typing.NotRequired[int | None],
+    "config": typing.NotRequired[list[TsfinfoConfigParameters] | None],
+    "help": bool,
+    "version": bool,
+    "tracks": list[InputPathType],
+})
+TsfinfoParametersTagged = typing.TypedDict('TsfinfoParametersTagged', {
+    "@type": typing.Literal["mrtrix/tsfinfo"],
     "count": bool,
     "ascii": typing.NotRequired[str | None],
     "info": bool,
@@ -34,44 +53,12 @@ TsfinfoParameters = typing.TypedDict('TsfinfoParameters', {
     "version": bool,
     "tracks": list[InputPathType],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "tsfinfo": tsfinfo_cargs,
-        "config": tsfinfo_config_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 def tsfinfo_config_params(
     key: str,
     value: str,
-) -> TsfinfoConfigParameters:
+) -> TsfinfoConfigParametersTagged:
     """
     Build parameters.
     
@@ -82,7 +69,7 @@ def tsfinfo_config_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "config",
+        "@type": "config",
         "key": key,
         "value": value,
     }
@@ -104,14 +91,14 @@ def tsfinfo_config_cargs(
     """
     cargs = []
     cargs.append("-config")
-    cargs.append(params.get("key"))
-    cargs.append(params.get("value"))
+    cargs.append(params.get("key", None))
+    cargs.append(params.get("value", None))
     return cargs
 
 
 class TsfinfoOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `tsfinfo(...)`.
+    Output object returned when calling `TsfinfoParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -129,7 +116,7 @@ def tsfinfo_params(
     config: list[TsfinfoConfigParameters] | None = None,
     help_: bool = False,
     version: bool = False,
-) -> TsfinfoParameters:
+) -> TsfinfoParametersTagged:
     """
     Build parameters.
     
@@ -154,7 +141,7 @@ def tsfinfo_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "tsfinfo",
+        "@type": "mrtrix/tsfinfo",
         "count": count,
         "info": info,
         "quiet": quiet,
@@ -188,33 +175,33 @@ def tsfinfo_cargs(
     """
     cargs = []
     cargs.append("tsfinfo")
-    if params.get("count"):
+    if params.get("count", False):
         cargs.append("-count")
-    if params.get("ascii") is not None:
+    if params.get("ascii", None) is not None:
         cargs.extend([
             "-ascii",
-            params.get("ascii")
+            params.get("ascii", None)
         ])
-    if params.get("info"):
+    if params.get("info", False):
         cargs.append("-info")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("debug"):
+    if params.get("debug", False):
         cargs.append("-debug")
-    if params.get("force"):
+    if params.get("force", False):
         cargs.append("-force")
-    if params.get("nthreads") is not None:
+    if params.get("nthreads", None) is not None:
         cargs.extend([
             "-nthreads",
-            str(params.get("nthreads"))
+            str(params.get("nthreads", None))
         ])
-    if params.get("config") is not None:
-        cargs.extend([a for c in [dyn_cargs(s["__STYXTYPE__"])(s, execution) for s in params.get("config")] for a in c])
-    if params.get("help"):
+    if params.get("config", None) is not None:
+        cargs.extend([a for c in [tsfinfo_config_cargs(s, execution) for s in params.get("config", None)] for a in c])
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-version")
-    cargs.extend([execution.input_file(f) for f in params.get("tracks")])
+    cargs.extend([execution.input_file(f) for f in params.get("tracks", None)])
     return cargs
 
 
@@ -239,9 +226,11 @@ def tsfinfo_outputs(
 
 def tsfinfo_execute(
     params: TsfinfoParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> TsfinfoOutputs:
     """
+    tsfinfo
+    
     Print out information about a track scalar file.
     
     
@@ -256,10 +245,12 @@ def tsfinfo_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `TsfinfoOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(TSFINFO_METADATA)
     params = execution.params(params)
     cargs = tsfinfo_cargs(params, execution)
     ret = tsfinfo_outputs(params, execution)
@@ -282,6 +273,8 @@ def tsfinfo(
     runner: Runner | None = None,
 ) -> TsfinfoOutputs:
     """
+    tsfinfo
+    
     Print out information about a track scalar file.
     
     
@@ -315,8 +308,6 @@ def tsfinfo(
     Returns:
         NamedTuple of outputs (described in `TsfinfoOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(TSFINFO_METADATA)
     params = tsfinfo_params(
         count=count,
         ascii_=ascii_,
@@ -330,15 +321,14 @@ def tsfinfo(
         version=version,
         tracks=tracks,
     )
-    return tsfinfo_execute(params, execution)
+    return tsfinfo_execute(params, runner)
 
 
 __all__ = [
     "TSFINFO_METADATA",
-    "TsfinfoConfigParameters",
     "TsfinfoOutputs",
-    "TsfinfoParameters",
     "tsfinfo",
     "tsfinfo_config_params",
+    "tsfinfo_execute",
     "tsfinfo_params",
 ]