niwrap-mrtrix 0.6.2__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_mrtrix/mrtrix/meshconvert.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 MESHCONVERT_METADATA = Metadata(
-    id="edf919b6fa69f1cc542dee75396d1628e1d251a2.boutiques",
+    id="8220276fef603995a2f39c3a7bc77794f643295b.boutiques",
     name="meshconvert",
     package="mrtrix",
     container_image_tag="mrtrix3/mrtrix3:3.0.4",
@@ -14,21 +14,46 @@ MESHCONVERT_METADATA = Metadata(
 
 
 MeshconvertTransformParameters = typing.TypedDict('MeshconvertTransformParameters', {
-    "__STYXTYPE__": typing.Literal["transform"],
+    "@type": typing.NotRequired[typing.Literal["transform"]],
+    "mode": str,
+    "image": InputPathType,
+})
+MeshconvertTransformParametersTagged = typing.TypedDict('MeshconvertTransformParametersTagged', {
+    "@type": typing.Literal["transform"],
     "mode": str,
     "image": InputPathType,
 })
 
 
 MeshconvertConfigParameters = typing.TypedDict('MeshconvertConfigParameters', {
-    "__STYXTYPE__": typing.Literal["config"],
+    "@type": typing.NotRequired[typing.Literal["config"]],
+    "key": str,
+    "value": str,
+})
+MeshconvertConfigParametersTagged = typing.TypedDict('MeshconvertConfigParametersTagged', {
+    "@type": typing.Literal["config"],
     "key": str,
     "value": str,
 })
 
 
 MeshconvertParameters = typing.TypedDict('MeshconvertParameters', {
-    "__STYXTYPE__": typing.Literal["meshconvert"],
+    "@type": typing.NotRequired[typing.Literal["mrtrix/meshconvert"]],
+    "binary": bool,
+    "transform": typing.NotRequired[MeshconvertTransformParameters | None],
+    "info": bool,
+    "quiet": bool,
+    "debug": bool,
+    "force": bool,
+    "nthreads": typing.NotRequired[int | None],
+    "config": typing.NotRequired[list[MeshconvertConfigParameters] | None],
+    "help": bool,
+    "version": bool,
+    "input": InputPathType,
+    "output": str,
+})
+MeshconvertParametersTagged = typing.TypedDict('MeshconvertParametersTagged', {
+    "@type": typing.Literal["mrtrix/meshconvert"],
     "binary": bool,
     "transform": typing.NotRequired[MeshconvertTransformParameters | None],
     "info": bool,
@@ -42,46 +67,12 @@ MeshconvertParameters = typing.TypedDict('MeshconvertParameters', {
     "input": InputPathType,
     "output": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "meshconvert": meshconvert_cargs,
-        "transform": meshconvert_transform_cargs,
-        "config": meshconvert_config_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "meshconvert": meshconvert_outputs,
-    }.get(t)
 
 
 def meshconvert_transform_params(
     mode: str,
     image: InputPathType,
-) -> MeshconvertTransformParameters:
+) -> MeshconvertTransformParametersTagged:
     """
     Build parameters.
     
@@ -96,7 +87,7 @@ def meshconvert_transform_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "transform",
+        "@type": "transform",
         "mode": mode,
         "image": image,
     }
@@ -118,15 +109,15 @@ def meshconvert_transform_cargs(
     """
     cargs = []
     cargs.append("-transform")
-    cargs.append(params.get("mode"))
-    cargs.append(execution.input_file(params.get("image")))
+    cargs.append(params.get("mode", None))
+    cargs.append(execution.input_file(params.get("image", None)))
     return cargs
 
 
 def meshconvert_config_params(
     key: str,
     value: str,
-) -> MeshconvertConfigParameters:
+) -> MeshconvertConfigParametersTagged:
     """
     Build parameters.
     
@@ -137,7 +128,7 @@ def meshconvert_config_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "config",
+        "@type": "config",
         "key": key,
         "value": value,
     }
@@ -159,14 +150,14 @@ def meshconvert_config_cargs(
     """
     cargs = []
     cargs.append("-config")
-    cargs.append(params.get("key"))
-    cargs.append(params.get("value"))
+    cargs.append(params.get("key", None))
+    cargs.append(params.get("value", None))
     return cargs
 
 
 class MeshconvertOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `meshconvert(...)`.
+    Output object returned when calling `MeshconvertParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -187,7 +178,7 @@ def meshconvert_params(
     config: list[MeshconvertConfigParameters] | None = None,
     help_: bool = False,
     version: bool = False,
-) -> MeshconvertParameters:
+) -> MeshconvertParametersTagged:
     """
     Build parameters.
     
@@ -214,7 +205,7 @@ def meshconvert_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "meshconvert",
+        "@type": "mrtrix/meshconvert",
         "binary": binary,
         "info": info,
         "quiet": quiet,
@@ -249,31 +240,31 @@ def meshconvert_cargs(
     """
     cargs = []
     cargs.append("meshconvert")
-    if params.get("binary"):
+    if params.get("binary", False):
         cargs.append("-binary")
-    if params.get("transform") is not None:
-        cargs.extend(dyn_cargs(params.get("transform")["__STYXTYPE__"])(params.get("transform"), execution))
-    if params.get("info"):
+    if params.get("transform", None) is not None:
+        cargs.extend(meshconvert_transform_cargs(params.get("transform", None), execution))
+    if params.get("info", False):
         cargs.append("-info")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("debug"):
+    if params.get("debug", False):
         cargs.append("-debug")
-    if params.get("force"):
+    if params.get("force", False):
         cargs.append("-force")
-    if params.get("nthreads") is not None:
+    if params.get("nthreads", None) is not None:
         cargs.extend([
             "-nthreads",
-            str(params.get("nthreads"))
+            str(params.get("nthreads", None))
         ])
-    if params.get("config") is not None:
-        cargs.extend([a for c in [dyn_cargs(s["__STYXTYPE__"])(s, execution) for s in params.get("config")] for a in c])
-    if params.get("help"):
+    if params.get("config", None) is not None:
+        cargs.extend([a for c in [meshconvert_config_cargs(s, execution) for s in params.get("config", None)] for a in c])
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-version")
-    cargs.append(execution.input_file(params.get("input")))
-    cargs.append(params.get("output"))
+    cargs.append(execution.input_file(params.get("input", None)))
+    cargs.append(params.get("output", None))
     return cargs
 
 
@@ -292,16 +283,18 @@ def meshconvert_outputs(
     """
     ret = MeshconvertOutputs(
         root=execution.output_file("."),
-        output=execution.output_file(params.get("output")),
+        output=execution.output_file(params.get("output", None)),
     )
     return ret
 
 
 def meshconvert_execute(
     params: MeshconvertParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> MeshconvertOutputs:
     """
+    meshconvert
+    
     Convert meshes between different formats, and apply transformations.
     
     
@@ -316,10 +309,12 @@ def meshconvert_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `MeshconvertOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(MESHCONVERT_METADATA)
     params = execution.params(params)
     cargs = meshconvert_cargs(params, execution)
     ret = meshconvert_outputs(params, execution)
@@ -343,6 +338,8 @@ def meshconvert(
     runner: Runner | None = None,
 ) -> MeshconvertOutputs:
     """
+    meshconvert
+    
     Convert meshes between different formats, and apply transformations.
     
     
@@ -378,8 +375,6 @@ def meshconvert(
     Returns:
         NamedTuple of outputs (described in `MeshconvertOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(MESHCONVERT_METADATA)
     params = meshconvert_params(
         binary=binary,
         transform=transform,
@@ -394,17 +389,15 @@ def meshconvert(
         input_=input_,
         output=output,
     )
-    return meshconvert_execute(params, execution)
+    return meshconvert_execute(params, runner)
 
 
 __all__ = [
     "MESHCONVERT_METADATA",
-    "MeshconvertConfigParameters",
     "MeshconvertOutputs",
-    "MeshconvertParameters",
-    "MeshconvertTransformParameters",
     "meshconvert",
     "meshconvert_config_params",
+    "meshconvert_execute",
     "meshconvert_params",
     "meshconvert_transform_params",
 ]

niwrap_mrtrix/mrtrix/meshfilter.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 MESHFILTER_METADATA = Metadata(
-    id="429537cadab8d1b6b1a4d57a859b9099ac811408.boutiques",
+    id="81b6a12d56aece38462e5d295246392629b9a98c.boutiques",
     name="meshfilter",
     package="mrtrix",
     container_image_tag="mrtrix3/mrtrix3:3.0.4",
@@ -14,14 +14,35 @@ MESHFILTER_METADATA = Metadata(
 
 
 MeshfilterConfigParameters = typing.TypedDict('MeshfilterConfigParameters', {
-    "__STYXTYPE__": typing.Literal["config"],
+    "@type": typing.NotRequired[typing.Literal["config"]],
+    "key": str,
+    "value": str,
+})
+MeshfilterConfigParametersTagged = typing.TypedDict('MeshfilterConfigParametersTagged', {
+    "@type": typing.Literal["config"],
     "key": str,
     "value": str,
 })
 
 
 MeshfilterParameters = typing.TypedDict('MeshfilterParameters', {
-    "__STYXTYPE__": typing.Literal["meshfilter"],
+    "@type": typing.NotRequired[typing.Literal["mrtrix/meshfilter"]],
+    "smooth_spatial": typing.NotRequired[float | None],
+    "smooth_influence": typing.NotRequired[float | None],
+    "info": bool,
+    "quiet": bool,
+    "debug": bool,
+    "force": bool,
+    "nthreads": typing.NotRequired[int | None],
+    "config": typing.NotRequired[list[MeshfilterConfigParameters] | None],
+    "help": bool,
+    "version": bool,
+    "input": InputPathType,
+    "filter": str,
+    "output": str,
+})
+MeshfilterParametersTagged = typing.TypedDict('MeshfilterParametersTagged', {
+    "@type": typing.Literal["mrtrix/meshfilter"],
     "smooth_spatial": typing.NotRequired[float | None],
     "smooth_influence": typing.NotRequired[float | None],
     "info": bool,
@@ -36,45 +57,12 @@ MeshfilterParameters = typing.TypedDict('MeshfilterParameters', {
     "filter": str,
     "output": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "meshfilter": meshfilter_cargs,
-        "config": meshfilter_config_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "meshfilter": meshfilter_outputs,
-    }.get(t)
 
 
 def meshfilter_config_params(
     key: str,
     value: str,
-) -> MeshfilterConfigParameters:
+) -> MeshfilterConfigParametersTagged:
     """
     Build parameters.
     
@@ -85,7 +73,7 @@ def meshfilter_config_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "config",
+        "@type": "config",
         "key": key,
         "value": value,
     }
@@ -107,14 +95,14 @@ def meshfilter_config_cargs(
     """
     cargs = []
     cargs.append("-config")
-    cargs.append(params.get("key"))
-    cargs.append(params.get("value"))
+    cargs.append(params.get("key", None))
+    cargs.append(params.get("value", None))
     return cargs
 
 
 class MeshfilterOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `meshfilter(...)`.
+    Output object returned when calling `MeshfilterParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -136,7 +124,7 @@ def meshfilter_params(
     config: list[MeshfilterConfigParameters] | None = None,
     help_: bool = False,
     version: bool = False,
-) -> MeshfilterParameters:
+) -> MeshfilterParametersTagged:
     """
     Build parameters.
     
@@ -162,7 +150,7 @@ def meshfilter_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "meshfilter",
+        "@type": "mrtrix/meshfilter",
         "info": info,
         "quiet": quiet,
         "debug": debug,
@@ -199,38 +187,38 @@ def meshfilter_cargs(
     """
     cargs = []
     cargs.append("meshfilter")
-    if params.get("smooth_spatial") is not None:
+    if params.get("smooth_spatial", None) is not None:
         cargs.extend([
             "-smooth_spatial",
-            str(params.get("smooth_spatial"))
+            str(params.get("smooth_spatial", None))
         ])
-    if params.get("smooth_influence") is not None:
+    if params.get("smooth_influence", None) is not None:
         cargs.extend([
             "-smooth_influence",
-            str(params.get("smooth_influence"))
+            str(params.get("smooth_influence", None))
         ])
-    if params.get("info"):
+    if params.get("info", False):
         cargs.append("-info")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("debug"):
+    if params.get("debug", False):
         cargs.append("-debug")
-    if params.get("force"):
+    if params.get("force", False):
         cargs.append("-force")
-    if params.get("nthreads") is not None:
+    if params.get("nthreads", None) is not None:
         cargs.extend([
             "-nthreads",
-            str(params.get("nthreads"))
+            str(params.get("nthreads", None))
         ])
-    if params.get("config") is not None:
-        cargs.extend([a for c in [dyn_cargs(s["__STYXTYPE__"])(s, execution) for s in params.get("config")] for a in c])
-    if params.get("help"):
+    if params.get("config", None) is not None:
+        cargs.extend([a for c in [meshfilter_config_cargs(s, execution) for s in params.get("config", None)] for a in c])
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-version")
-    cargs.append(execution.input_file(params.get("input")))
-    cargs.append(params.get("filter"))
-    cargs.append(params.get("output"))
+    cargs.append(execution.input_file(params.get("input", None)))
+    cargs.append(params.get("filter", None))
+    cargs.append(params.get("output", None))
     return cargs
 
 
@@ -249,16 +237,18 @@ def meshfilter_outputs(
     """
     ret = MeshfilterOutputs(
         root=execution.output_file("."),
-        output=execution.output_file(params.get("output")),
+        output=execution.output_file(params.get("output", None)),
     )
     return ret
 
 
 def meshfilter_execute(
     params: MeshfilterParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> MeshfilterOutputs:
     """
+    meshfilter
+    
     Apply filter operations to meshes.
     
     While this command has only one filter operation currently available, it
@@ -275,10 +265,12 @@ def meshfilter_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `MeshfilterOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(MESHFILTER_METADATA)
     params = execution.params(params)
     cargs = meshfilter_cargs(params, execution)
     ret = meshfilter_outputs(params, execution)
@@ -303,6 +295,8 @@ def meshfilter(
     runner: Runner | None = None,
 ) -> MeshfilterOutputs:
     """
+    meshfilter
+    
     Apply filter operations to meshes.
     
     While this command has only one filter operation currently available, it
@@ -339,8 +333,6 @@ def meshfilter(
     Returns:
         NamedTuple of outputs (described in `MeshfilterOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(MESHFILTER_METADATA)
     params = meshfilter_params(
         smooth_spatial=smooth_spatial,
         smooth_influence=smooth_influence,
@@ -356,15 +348,14 @@ def meshfilter(
         filter_=filter_,
         output=output,
     )
-    return meshfilter_execute(params, execution)
+    return meshfilter_execute(params, runner)
 
 
 __all__ = [
     "MESHFILTER_METADATA",
-    "MeshfilterConfigParameters",
     "MeshfilterOutputs",
-    "MeshfilterParameters",
     "meshfilter",
     "meshfilter_config_params",
+    "meshfilter_execute",
     "meshfilter_params",
 ]