ngio 0.5.0__py3-none-any.whl → 0.5.0a2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. ngio/__init__.py +2 -5
  2. ngio/common/__init__.py +6 -11
  3. ngio/common/_masking_roi.py +54 -34
  4. ngio/common/_pyramid.py +85 -309
  5. ngio/common/_roi.py +330 -258
  6. ngio/experimental/iterators/_feature.py +3 -3
  7. ngio/experimental/iterators/_rois_utils.py +11 -10
  8. ngio/hcs/_plate.py +60 -132
  9. ngio/images/_abstract_image.py +35 -539
  10. ngio/images/_create.py +287 -0
  11. ngio/images/_create_synt_container.py +42 -39
  12. ngio/images/_image.py +250 -516
  13. ngio/images/_label.py +172 -249
  14. ngio/images/_masked_image.py +2 -2
  15. ngio/images/_ome_zarr_container.py +241 -644
  16. ngio/io_pipes/_io_pipes.py +9 -9
  17. ngio/io_pipes/_io_pipes_masked.py +7 -7
  18. ngio/io_pipes/_io_pipes_roi.py +6 -6
  19. ngio/io_pipes/_io_pipes_types.py +3 -3
  20. ngio/io_pipes/_match_shape.py +8 -6
  21. ngio/io_pipes/_ops_slices_utils.py +5 -8
  22. ngio/ome_zarr_meta/__init__.py +18 -29
  23. ngio/ome_zarr_meta/_meta_handlers.py +708 -392
  24. ngio/ome_zarr_meta/ngio_specs/__init__.py +0 -4
  25. ngio/ome_zarr_meta/ngio_specs/_axes.py +51 -152
  26. ngio/ome_zarr_meta/ngio_specs/_dataset.py +22 -13
  27. ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py +91 -129
  28. ngio/ome_zarr_meta/ngio_specs/_ngio_image.py +68 -57
  29. ngio/ome_zarr_meta/v04/__init__.py +1 -5
  30. ngio/ome_zarr_meta/v04/{_v04_spec.py → _v04_spec_utils.py} +85 -54
  31. ngio/ome_zarr_meta/v05/__init__.py +1 -5
  32. ngio/ome_zarr_meta/v05/{_v05_spec.py → _v05_spec_utils.py} +87 -64
  33. ngio/resources/__init__.py +1 -1
  34. ngio/resources/resource_model.py +1 -1
  35. ngio/tables/_tables_container.py +11 -62
  36. ngio/tables/backends/_anndata.py +8 -58
  37. ngio/tables/backends/_anndata_utils.py +6 -1
  38. ngio/tables/backends/_csv.py +19 -3
  39. ngio/tables/backends/_json.py +13 -10
  40. ngio/tables/backends/_non_zarr_backends.py +196 -0
  41. ngio/tables/backends/_parquet.py +31 -3
  42. ngio/tables/v1/_roi_table.py +24 -41
  43. ngio/utils/__init__.py +12 -6
  44. ngio/utils/_datasets.py +0 -6
  45. ngio/utils/_logger.py +50 -0
  46. ngio/utils/_zarr_utils.py +58 -167
  47. {ngio-0.5.0.dist-info → ngio-0.5.0a2.dist-info}/METADATA +4 -11
  48. ngio-0.5.0a2.dist-info/RECORD +89 -0
  49. {ngio-0.5.0.dist-info → ngio-0.5.0a2.dist-info}/WHEEL +1 -1
  50. ngio/images/_create_utils.py +0 -406
  51. ngio/tables/backends/_py_arrow_backends.py +0 -222
  52. ngio-0.5.0.dist-info/RECORD +0 -88
  53. {ngio-0.5.0.dist-info → ngio-0.5.0a2.dist-info}/licenses/LICENSE +0 -0
ngio-0.5.0.dist-info/RECORD DELETED
@@ -1,88 +0,0 @@
1
- ngio/__init__.py,sha256=kyInohhWrBs4qkbMYFIQeAiy1CDpvbSOtXB4buFocbw,1535
2
- ngio/common/__init__.py,sha256=F3zAHQIhwig1xUA-SpmFVRtMeOrEj926-nHWhj-wS6c,684
3
- ngio/common/_dimensions.py,sha256=w8PYgyWxA8hgJETjFbw5CXf7WrasCL5FbzgfL1in86M,11361
4
- ngio/common/_masking_roi.py,sha256=-2IzQvaIpdgAxS8LY3DRb-Eax5efX6H0OhV7lNVdL1E,5202
5
- ngio/common/_pyramid.py,sha256=7kbvCY4J0hLl_iV5oT267j_h3UTkbqIdltqHcrwicvw,17571
6
- ngio/common/_roi.py,sha256=IM0rYaekNvEDSMctYbAEZkeG9iPaJ1qjtnJ9kOVV8as,11416
7
- ngio/common/_synt_images_utils.py,sha256=B6uYOW1NyrM06YMR-csca3_YnAAkPRTbvnbLdy9tk9E,3188
8
- ngio/common/_zoom.py,sha256=U01c-vqXjzZkrpd9Yvs24frVfTls_xPJeeaFCGmUwYI,6727
9
- ngio/experimental/__init__.py,sha256=3pmBtHi-i8bKjTsvrOJM56ZyRX3Pv_dceCdt88-8COQ,147
10
- ngio/experimental/iterators/__init__.py,sha256=TECOMGb5PEEZ0yXxt8pqIGvLKG41g_L1fTJU-zGPeV8,488
11
- ngio/experimental/iterators/_abstract_iterator.py,sha256=7aAoMI-6vYGCMKxO3M10WpuBMTdqX4zr0K-TutAOp88,13195
12
- ngio/experimental/iterators/_feature.py,sha256=OnqeSP-UMWku7AIBcutsDsAWqnFqPrjCJiMvMGM96fk,6714
13
- ngio/experimental/iterators/_image_processing.py,sha256=cM7sL7xgdcjSOKAu-6367Aov89o6wgiJ_wqCGkU2Bsw,5091
14
- ngio/experimental/iterators/_mappers.py,sha256=VVVsjems57wJUnWeufUFcgqa23k7VPeFL4Nc04HVw4o,1399
15
- ngio/experimental/iterators/_rois_utils.py,sha256=5foGjt3qrACNrO29LlvSUbJ4yfI0z6MhU2oVCzEU214,4363
16
- ngio/experimental/iterators/_segmentation.py,sha256=xzotGvTn04HPeMeXZ_URnQqWco6d2lH6Ng6vkCUh9NM,9153
17
- ngio/hcs/__init__.py,sha256=G8j9vD-liLeB_UeGtKYIgshWvJnUA6ks9GwjvWBLdHs,357
18
- ngio/hcs/_plate.py,sha256=-dFlUuB4DbzR-A5OONafiIGaTpasd9uybRybNgGDFPQ,46118
19
- ngio/images/__init__.py,sha256=9Whvt7GTiCgT_vXaEEqGnDaY1-UsRk3dhLTv091F_g4,1211
20
- ngio/images/_abstract_image.py,sha256=YUBLCqLOWD_9BlwhoVqNc6ISdmmqP1DUbZKn_sk8DJU,36022
21
- ngio/images/_create_synt_container.py,sha256=4hZa0wKfI5RL30vsPE841SCVhWNb9Kj8kJiaTsD-0BA,5399
22
- ngio/images/_create_utils.py,sha256=CxRO-b0_vyL27jMg6koXlt9vFNU1lmqKIWOU5ypAtvg,13811
23
- ngio/images/_image.py,sha256=Ei2_bqsLg7q1rhjDIKusXqSdqhar8Ojsd6mYZ9ar6GI,45558
24
- ngio/images/_label.py,sha256=iC9XPyM5SOWcI3Z3PZ0M1RUUCCUbBQ98zdrchva00Jw,16002
25
- ngio/images/_masked_image.py,sha256=25BFnEHTqWdq5ImLs6dbo_X-ryGLIL7vJ2mmbx4Npv8,18834
26
- ngio/images/_ome_zarr_container.py,sha256=ddcDRGhmJoyg47NHFaoNLZuWfXpLfNkZtP-hzLWWBIQ,56100
27
- ngio/images/_table_ops.py,sha256=jFv_AMqoB4JBpoWsMtZppZVW7dAOC_u-JpfNm8b33kY,15292
28
- ngio/io_pipes/__init__.py,sha256=arW_7GWzZs82kPNKdm_6B1sIDFV0lWwp-ZaORr9Q1FQ,2412
29
- ngio/io_pipes/_io_pipes.py,sha256=l85mmjj1l0uYU3qzsSHg9l8cMIEevInm_MTD-8MlXgw,10603
30
- ngio/io_pipes/_io_pipes_masked.py,sha256=uvfNIuW8prWux3fZ-a25l44zDfZW4qBaXZEm0TkhloA,16916
31
- ngio/io_pipes/_io_pipes_roi.py,sha256=HJHlItx2nsFYcE4OjvVR-W0lFMMK8CcyYK23dKUrP8w,4472
32
- ngio/io_pipes/_io_pipes_types.py,sha256=PcRdnjBJIsXcDT1_dbH2LZiH6d3z6D7y48cmybyZCXk,1358
33
- ngio/io_pipes/_match_shape.py,sha256=sCAhJHzlqZwnz1MmwFCUQkH_6rohMSNwPCAmCuDElEA,13002
34
- ngio/io_pipes/_ops_axes.py,sha256=Geg4ZXxB0njWWopX9YeiwRJJ9Ef2GKfG0NIUafOmi2c,10043
35
- ngio/io_pipes/_ops_slices.py,sha256=hHMIOQ_niUSK9uFl8P2-10dP_K4GX3Do6vivN4fGRE0,14520
36
- ngio/io_pipes/_ops_slices_utils.py,sha256=mps_I0eTI4gdBVM9MCKsd8rCyefdo9bIK9fEmqwr23E,6633
37
- ngio/io_pipes/_ops_transforms.py,sha256=uITs6v6sZ7DQ_Hpw3JdX8MuPOzir-bihvGzY84Qn4wY,2934
38
- ngio/io_pipes/_zoom_transform.py,sha256=WBY1tO6_Qhf8FaDujfTdipuuqFf7PSi204wx5VKKs88,6884
39
- ngio/ome_zarr_meta/__init__.py,sha256=7VDrX-ev5Gg2zQfGsrlj-YPTeIGzbplxbptxw1u-vU0,1491
40
- ngio/ome_zarr_meta/_meta_handlers.py,sha256=u6a-z-q4Gu0TSahpD5qCmpIOLwnJqNjfoAnOyzzCyrg,14794
41
- ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=FukhukN9ksW-SDUiAtmiwpQ7c9qWAyq0cnTnSqZLsVc,1800
42
- ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=yfFylcr_xGda5HuXWRV25V4gRUbNJdfJwyn9mqXEB6I,20313
43
- ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=TDxIy-yVc2YaWPIFJRYnYwZbA8O5Ee_OiWppHYrEdpU,16647
44
- ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=5YdAplk90koX3vjoIJimms-CJYxt095rJ9YagZSQg88,2872
45
- ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=kktIwHWZ8u2f6xMUB4zXiUfNF6i-We86_agLjJ7XVOU,18363
46
- ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=LJE_bA8e5KIEm_7pr15Etda-KhKCAqjWCUFHoCnwTag,15654
47
- ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=4VF1djY9T5tp6GCJXppFrUJwALI1XgIm0imoM5rNvdE,3876
48
- ngio/ome_zarr_meta/v04/__init__.py,sha256=tRt3zGelL948EoLfy_gW-LKvJcBbSkbT9kwIgU0hQV8,721
49
- ngio/ome_zarr_meta/v04/_custom_models.py,sha256=5GxiDERvLuvq4QvApcA6EiKLS6hLFX1R0R_9rSaa85A,530
50
- ngio/ome_zarr_meta/v04/_v04_spec.py,sha256=S9a9Z3wYLI-WHnOZsg3RKPAcovssqGIr-x8GVAjV0IU,14321
51
- ngio/ome_zarr_meta/v05/__init__.py,sha256=B6VIUkrm5W4lcrvy4R7c7NZ6dEx-0a1AhqhZ7snCnCo,721
52
- ngio/ome_zarr_meta/v05/_custom_models.py,sha256=ZN3bE9nwx4y3tElhsYafI4S2zp_WzdkQKcyuuBiaXXo,530
53
- ngio/ome_zarr_meta/v05/_v05_spec.py,sha256=pCIoSsYmJjmrZ3jbgkdio7e6qKV2_ggd4WQe4zBSt8M,15225
54
- ngio/resources/__init__.py,sha256=pOo2YqxDlzTSWo6qyYQzXZbIKWSUoEl3iqX41Iw-oQI,1661
55
- ngio/resources/resource_model.py,sha256=mmx8gbfDHBg_gVNvtZZydAZDATdmcaM8DsOfnRVrXXA,858
56
- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/mask.png,sha256=g3QmxQdmeciAtBe5cTCRfR6yw3keG9cBYfjizMo6EGo,11890
57
- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png,sha256=Yw0k5pn2EHDMWTwyb7N51NX7WVk6-MlwfP9WZrhY-Ic,19446
58
- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg,sha256=82lejQAIokj5w9g-qqhysDTWpHtNvJTkdURG_BjqIxQ,37743
59
- ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
60
- ngio/tables/_abstract_table.py,sha256=rwGa47TzbFmosucBWVfFq6JEXtgGvOdUVtU9DIelV88,8204
61
- ngio/tables/_tables_container.py,sha256=4frJpcfuW-J8N13enzFuH6wQIVwRVRKN7FOLWx_VxRc,14035
62
- ngio/tables/backends/__init__.py,sha256=MwSRXNF1rWQBFOTDA_vT3oGoNZpviVgytsL5Txnu08I,1619
63
- ngio/tables/backends/_abstract_backend.py,sha256=M1ogsBpWBiQMV65YweZhA845PAtkzG2BsZCPN_7Xp8U,7613
64
- ngio/tables/backends/_anndata.py,sha256=T67N-SPNO4eqe7-VGAUfgtwaSy_o2DqCvZgE2yRH5jE,4582
65
- ngio/tables/backends/_anndata_utils.py,sha256=PoHiLkGeDhBgPsEMJi9QH-NejHmfrfILcwj1CYubyCM,3095
66
- ngio/tables/backends/_csv.py,sha256=iZJNLHOXYysV_2iq6Lmekq0XXYsVE7OYrKz2HP2TU9w,479
67
- ngio/tables/backends/_json.py,sha256=A4iaKOIc5Q_XKDOm321QNqAN4DAOuA-dEinnfTlk1Fk,3091
68
- ngio/tables/backends/_parquet.py,sha256=Fi3VZlTH5UTykk0eqr43_e_Qt_GQcEN-3pHK07XFBwk,503
69
- ngio/tables/backends/_py_arrow_backends.py,sha256=lxxI5TN4lFYwpsjD1g1xAxEt4lZ9Mu7YW3-m3nIuo2g,8587
70
- ngio/tables/backends/_table_backends.py,sha256=ksP2NAosXZkNMZf-IMrLx7bjQgp_eKfvPYK4vMdT1A8,7250
71
- ngio/tables/backends/_utils.py,sha256=t4dLXSPxx2AnJvVtj0GIwrLoO11h4Ges6U7hj4md0hY,19730
72
- ngio/tables/v1/__init__.py,sha256=Wr1_9RZFpaN8FYMTnxT9Yjkw4AS7y9FMWailmB_uj5g,617
73
- ngio/tables/v1/_condition_table.py,sha256=T0Uq5BKkmMoEspt_Rx0U99Ow6S9GAMZDHqvUO5obCAM,1780
74
- ngio/tables/v1/_feature_table.py,sha256=n9uMHwoBh-_dlOhUXCFbmAjXFVXncNCR3SjE2qzXI68,3821
75
- ngio/tables/v1/_generic_table.py,sha256=1ktJHeuv7U1g5Z8PFUuTkCjOzcYMQd8xegKHKUedJB8,1240
76
- ngio/tables/v1/_roi_table.py,sha256=DuKJlDmtQtLOfL0g4CSdncfm4hBsKWG6F6fkMUpt4Nk,17821
77
- ngio/transforms/__init__.py,sha256=JA0-Ui7skbXkm9ofN-AEhU1FTLutkMkwTdVD-310frQ,113
78
- ngio/transforms/_zoom.py,sha256=otyE-vxFnywUJ8U4mHjat-bNG_7_jv62ckTpqDMxyVQ,550
79
- ngio/utils/__init__.py,sha256=d2OHQGMFPpf8-_ipuqquxtqCNGJpX5yXt34A65nScUU,1037
80
- ngio/utils/_cache.py,sha256=Ey9fgc_BTdMyqg6c80C0CuGDhOafln8-3e_1MQ0MFzw,1283
81
- ngio/utils/_datasets.py,sha256=YOV367skFA8nbKAqbyK0EsUU7E9UId_u5ButuLesrzk,5896
82
- ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
83
- ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
84
- ngio/utils/_zarr_utils.py,sha256=n9EvUIZFNIBIHBoadefSz_7r9q8GLu7x7FF2G6Dgb94,18095
85
- ngio-0.5.0.dist-info/METADATA,sha256=tecky39dej2Kd41NqWTJaAloeiXQAgGDtoyXJNJdWgU,6424
86
- ngio-0.5.0.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
87
- ngio-0.5.0.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
88
- ngio-0.5.0.dist-info/RECORD,,