ngio 0.5.0__py3-none-any.whl → 0.5.0a1__py3-none-any.whl

{ngio-0.5.0.dist-info → ngio-0.5.0a1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.5.0
+Version: 0.5.0a1
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/BioVisionCenter/ngio
 Project-URL: repository, https://github.com/BioVisionCenter/ngio
@@ -13,17 +13,16 @@ Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
-Classifier: Programming Language :: Python :: 3.14
 Classifier: Typing :: Typed
-Requires-Python: <3.15,>=3.11
+Requires-Python: <3.14,>=3.11
 Requires-Dist: aiohttp
 Requires-Dist: anndata
-Requires-Dist: dask[array]<2025.11.0
-Requires-Dist: dask[distributed]<2025.11.0
+Requires-Dist: dask[array]
+Requires-Dist: dask[distributed]
 Requires-Dist: filelock
 Requires-Dist: numpy
 Requires-Dist: ome-zarr-models
-Requires-Dist: pandas<3.0.0,>=1.2.0
+Requires-Dist: pandas>=1.2.0
 Requires-Dist: pillow
 Requires-Dist: polars
 Requires-Dist: pooch
@@ -32,6 +31,7 @@ Requires-Dist: pydantic
 Requires-Dist: requests
 Requires-Dist: zarr>3
 Provides-Extra: dev
+Requires-Dist: devtools; extra == 'dev'
 Requires-Dist: matplotlib; extra == 'dev'
 Requires-Dist: mypy; extra == 'dev'
 Requires-Dist: napari; extra == 'dev'
@@ -43,7 +43,6 @@ Requires-Dist: pyqt5; extra == 'dev'
 Requires-Dist: rich; extra == 'dev'
 Requires-Dist: ruff; extra == 'dev'
 Requires-Dist: scikit-image; extra == 'dev'
-Requires-Dist: zarrs; extra == 'dev'
 Provides-Extra: docs
 Requires-Dist: griffe-typingdoc; extra == 'docs'
 Requires-Dist: markdown-exec[ansi]; extra == 'docs'
@@ -58,17 +57,11 @@ Requires-Dist: mkdocs-jupyter; extra == 'docs'
 Requires-Dist: mkdocs-material; extra == 'docs'
 Requires-Dist: mkdocstrings[python]; extra == 'docs'
 Requires-Dist: rich; extra == 'docs'
-Requires-Dist: ruff; extra == 'docs'
 Requires-Dist: scikit-image; extra == 'docs'
 Requires-Dist: tabulate; extra == 'docs'
 Provides-Extra: test
-Requires-Dist: boto; extra == 'test'
-Requires-Dist: devtools; extra == 'test'
-Requires-Dist: moto[server]; extra == 'test'
 Requires-Dist: pytest; extra == 'test'
 Requires-Dist: pytest-cov; extra == 'test'
-Requires-Dist: pytest-httpserver; extra == 'test'
-Requires-Dist: s3fs; extra == 'test'
 Requires-Dist: scikit-image; extra == 'test'
 Description-Content-Type: text/markdown
 

ngio-0.5.0a1.dist-info/RECORD

@@ -0,0 +1,88 @@
+ngio/__init__.py,sha256=rEgnXuU6TCejUUGsxt4eKmjMhxjYh0fYBxWF4o5YjbE,1435
+ngio/common/__init__.py,sha256=aPSuUbdGryrxbnlWrsVNe3LZoBAWC4GijR1BNH1UwuU,612
+ngio/common/_dimensions.py,sha256=w8PYgyWxA8hgJETjFbw5CXf7WrasCL5FbzgfL1in86M,11361
+ngio/common/_masking_roi.py,sha256=ZZTXordEZoq_ADk0OzADvq-5dPOwUBSuNobzFR8fpTw,5697
+ngio/common/_pyramid.py,sha256=186eQSCxP_x2heYKmMP_Edl4Aml9Eo1bBmIHlwslqy8,8699
+ngio/common/_roi.py,sha256=9fKFTHoUiP0xmxvQiFkNmIuwWg3bFuRaAx-froCSqvA,11487
+ngio/common/_synt_images_utils.py,sha256=B6uYOW1NyrM06YMR-csca3_YnAAkPRTbvnbLdy9tk9E,3188
+ngio/common/_zoom.py,sha256=U01c-vqXjzZkrpd9Yvs24frVfTls_xPJeeaFCGmUwYI,6727
+ngio/experimental/__init__.py,sha256=3pmBtHi-i8bKjTsvrOJM56ZyRX3Pv_dceCdt88-8COQ,147
+ngio/experimental/iterators/__init__.py,sha256=TECOMGb5PEEZ0yXxt8pqIGvLKG41g_L1fTJU-zGPeV8,488
+ngio/experimental/iterators/_abstract_iterator.py,sha256=7aAoMI-6vYGCMKxO3M10WpuBMTdqX4zr0K-TutAOp88,13195
+ngio/experimental/iterators/_feature.py,sha256=g03yHIzYpTVeD3KUq2a4TwX29Dt48XaaGdZNSykYy7M,6749
+ngio/experimental/iterators/_image_processing.py,sha256=cM7sL7xgdcjSOKAu-6367Aov89o6wgiJ_wqCGkU2Bsw,5091
+ngio/experimental/iterators/_mappers.py,sha256=VVVsjems57wJUnWeufUFcgqa23k7VPeFL4Nc04HVw4o,1399
+ngio/experimental/iterators/_rois_utils.py,sha256=Q-8lQ26neYn63h_RvfypYqvrq2UUN2O3xqVe57k_ufU,4363
+ngio/experimental/iterators/_segmentation.py,sha256=xzotGvTn04HPeMeXZ_URnQqWco6d2lH6Ng6vkCUh9NM,9153
+ngio/hcs/__init__.py,sha256=G8j9vD-liLeB_UeGtKYIgshWvJnUA6ks9GwjvWBLdHs,357
+ngio/hcs/_plate.py,sha256=qfRwbCKaoz_AWTi8RDFFwOxy5geSknfJrPcqFVno9zI,44288
+ngio/images/__init__.py,sha256=9Whvt7GTiCgT_vXaEEqGnDaY1-UsRk3dhLTv091F_g4,1211
+ngio/images/_abstract_image.py,sha256=hrB9xn4MFRxnxE1d7HKnM8SXVPUGhMD9u32yBHTsFiU,18517
+ngio/images/_create.py,sha256=OirIKg843CCSiwy_oUolX2UHlROR_iO4rN_IK47jDWc,10448
+ngio/images/_create_synt_container.py,sha256=D3SkjYN_AZ5fSefjEX0iQ3ZGEuBTWZvuPQIwHc6l-CU,5519
+ngio/images/_image.py,sha256=JWN7qmNVZxAzm9zmaImYseDt8xzYtOw-N0olR6VQo_8,33483
+ngio/images/_label.py,sha256=sJUB8of7t1YErZRu3t7jzGjlRn3KAAs0EL5nFrbvvlc,11921
+ngio/images/_masked_image.py,sha256=YhbBzgPZMav6rX0WYue1BaxAzEIsfaQrxUIOK6ZWZcw,18848
+ngio/images/_ome_zarr_container.py,sha256=tfG40PLNfyfaR2pVAmGINlkKJRoQ4W0L0melFotMcP8,38737
+ngio/images/_table_ops.py,sha256=jFv_AMqoB4JBpoWsMtZppZVW7dAOC_u-JpfNm8b33kY,15292
+ngio/io_pipes/__init__.py,sha256=arW_7GWzZs82kPNKdm_6B1sIDFV0lWwp-ZaORr9Q1FQ,2412
+ngio/io_pipes/_io_pipes.py,sha256=KuwMYofE11EKx0iplWXBQZ-eE1A9YpGDprWh98cUlAI,10710
+ngio/io_pipes/_io_pipes_masked.py,sha256=077j1XNgyCNOHlOsbjPOWcLtb2ccFvbLp-cPzWL1j3c,16999
+ngio/io_pipes/_io_pipes_roi.py,sha256=cu_vd4MTDuyiabCWQ5ieMLI4v3tu_twSEe4X5-3bp84,4543
+ngio/io_pipes/_io_pipes_types.py,sha256=xCeUd9rZe2wsgoZR1pUq6L4LSeawoPsb-9pmz5C6ztA,1393
+ngio/io_pipes/_match_shape.py,sha256=eDy_Eqzld08m9zDuIjAvJnIhWh_HVjQS-5Pw9BMjdbw,13200
+ngio/io_pipes/_ops_axes.py,sha256=Geg4ZXxB0njWWopX9YeiwRJJ9Ef2GKfG0NIUafOmi2c,10043
+ngio/io_pipes/_ops_slices.py,sha256=hHMIOQ_niUSK9uFl8P2-10dP_K4GX3Do6vivN4fGRE0,14520
+ngio/io_pipes/_ops_slices_utils.py,sha256=xjDaCVGmtME5Q0XSmGrY3nUKYgw5jOBQZW4YDq5s4vE,6580
+ngio/io_pipes/_ops_transforms.py,sha256=uITs6v6sZ7DQ_Hpw3JdX8MuPOzir-bihvGzY84Qn4wY,2934
+ngio/io_pipes/_zoom_transform.py,sha256=WBY1tO6_Qhf8FaDujfTdipuuqFf7PSi204wx5VKKs88,6884
+ngio/ome_zarr_meta/__init__.py,sha256=tzxW2oVhfeMBVuv3XkcbOLzMnbDvUnie-AVsvSxRkdE,1265
+ngio/ome_zarr_meta/_meta_handlers.py,sha256=P2Edraf2MlTMlwFOpXCkUqD1QTN2nTwGv5Ff0ab5csw,26715
+ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=U2FqZR91Ob2N6CqKdyw-_Ll-wMgmGuPZGVRCr6wuRFY,1698
+ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=gNzxCddn53m9dlNJlV5CL-aQS-nGJrbCDGfAp5L97LY,16412
+ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=TDxIy-yVc2YaWPIFJRYnYwZbA8O5Ee_OiWppHYrEdpU,16647
+ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=CrHnjVWBGYPqErKkHR-E2DKrE3DmGznXMkd3Y9Z4uYo,3434
+ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=N1CGPOubwf0pvm8tiTnh-C1cOu9lToyDe3WagnEnPN4,17207
+ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=y44AVdB7IQD9t5yiZV6cXSvV9_-CGDiYrCfX3PeaclQ,16231
+ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=4VF1djY9T5tp6GCJXppFrUJwALI1XgIm0imoM5rNvdE,3876
+ngio/ome_zarr_meta/v04/__init__.py,sha256=dJRzzxyYc81kf-0Hip_bqvbdManaM8XTdQX2meWyCSs,583
+ngio/ome_zarr_meta/v04/_custom_models.py,sha256=5GxiDERvLuvq4QvApcA6EiKLS6hLFX1R0R_9rSaa85A,530
+ngio/ome_zarr_meta/v04/_v04_spec_utils.py,sha256=xa3DT7VJJZyd-4EB-KGjlPcKkTmst_izTcoWj30mLiY,15766
+ngio/ome_zarr_meta/v05/__init__.py,sha256=j6YuIKu2bxmhlhFCbhXg5UA4qD7V8CpyTAHl1vnIpq8,583
+ngio/ome_zarr_meta/v05/_custom_models.py,sha256=ZN3bE9nwx4y3tElhsYafI4S2zp_WzdkQKcyuuBiaXXo,530
+ngio/ome_zarr_meta/v05/_v05_spec_utils.py,sha256=vd9-EiZZjBpCXmwgLj8a1RWiwFpSjjxKBfbH8OpsG9M,16493
+ngio/resources/__init__.py,sha256=4E4TXTNYEgRHt26C1XcC4pPobJJsmZRYm1Ml4uAuAkE,1664
+ngio/resources/resource_model.py,sha256=eE1m0dyk-2psPC4X8Ifyan524QHUOd52TEQdvoU0m8I,861
+ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/mask.png,sha256=g3QmxQdmeciAtBe5cTCRfR6yw3keG9cBYfjizMo6EGo,11890
+ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png,sha256=Yw0k5pn2EHDMWTwyb7N51NX7WVk6-MlwfP9WZrhY-Ic,19446
+ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg,sha256=82lejQAIokj5w9g-qqhysDTWpHtNvJTkdURG_BjqIxQ,37743
+ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
+ngio/tables/_abstract_table.py,sha256=rwGa47TzbFmosucBWVfFq6JEXtgGvOdUVtU9DIelV88,8204
+ngio/tables/_tables_container.py,sha256=3xmpREaN671l40MPprnl1BD-VoOb6xfjECb5mNoMW0w,12173
+ngio/tables/backends/__init__.py,sha256=MwSRXNF1rWQBFOTDA_vT3oGoNZpviVgytsL5Txnu08I,1619
+ngio/tables/backends/_abstract_backend.py,sha256=M1ogsBpWBiQMV65YweZhA845PAtkzG2BsZCPN_7Xp8U,7613
+ngio/tables/backends/_anndata.py,sha256=KBzXVxaXstVx3ofcLYYFm8ECVFDaHxfUWcKdg5vQPqY,2992
+ngio/tables/backends/_anndata_utils.py,sha256=g0mIfihXd4p75bvMvCYTljBKTP13EZ9p_SVMifDKE3Y,3208
+ngio/tables/backends/_csv.py,sha256=Ev61D-AUKo4LIhXRmWPJgYbHI7eQdxiajQR574DevEM,932
+ngio/tables/backends/_json.py,sha256=1ZsEuXDJm1rOZV_KjFm8CB0qhv7L1W7L2EGWPf4q_p0,3137
+ngio/tables/backends/_non_zarr_backends.py,sha256=5a1fbxiVnUXt1tiA025BqN0T7SQJvIERFtQHp4PhFHw,7294
+ngio/tables/backends/_parquet.py,sha256=ic-p86h8lce8q9luBJGRzy6vxlWyJvA0-2l5cUD6OqY,1398
+ngio/tables/backends/_table_backends.py,sha256=ksP2NAosXZkNMZf-IMrLx7bjQgp_eKfvPYK4vMdT1A8,7250
+ngio/tables/backends/_utils.py,sha256=t4dLXSPxx2AnJvVtj0GIwrLoO11h4Ges6U7hj4md0hY,19730
+ngio/tables/v1/__init__.py,sha256=Wr1_9RZFpaN8FYMTnxT9Yjkw4AS7y9FMWailmB_uj5g,617
+ngio/tables/v1/_condition_table.py,sha256=T0Uq5BKkmMoEspt_Rx0U99Ow6S9GAMZDHqvUO5obCAM,1780
+ngio/tables/v1/_feature_table.py,sha256=n9uMHwoBh-_dlOhUXCFbmAjXFVXncNCR3SjE2qzXI68,3821
+ngio/tables/v1/_generic_table.py,sha256=1ktJHeuv7U1g5Z8PFUuTkCjOzcYMQd8xegKHKUedJB8,1240
+ngio/tables/v1/_roi_table.py,sha256=g7UpMmpf3uAfaG59WYRnimUBgiB_T1qUJRwMZpMt9cI,17099
+ngio/transforms/__init__.py,sha256=JA0-Ui7skbXkm9ofN-AEhU1FTLutkMkwTdVD-310frQ,113
+ngio/transforms/_zoom.py,sha256=otyE-vxFnywUJ8U4mHjat-bNG_7_jv62ckTpqDMxyVQ,550
+ngio/utils/__init__.py,sha256=XPYh8ehC7uXNU2cFFXZAw-S3DpWpX1Yq2xGkffZv5vI,1142
+ngio/utils/_datasets.py,sha256=6GtxfPkjutNaeg5BHuJDBP0GudvQXHLU6mmHp_o0bGA,5650
+ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
+ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
+ngio/utils/_logger.py,sha256=N5W0a_xwze4blS1MolidBkTMbjTbg8GPguJZNun3mAE,1392
+ngio/utils/_zarr_utils.py,sha256=ATehiEALPI__eNQSWdSW5PpJLmI2FECrexA9jTZAI2s,16103
+ngio-0.5.0a1.dist-info/METADATA,sha256=AT0kbnHlYkhiL0_AmZpOm8DagaEPGCkI1xze_cJy3w8,6104
+ngio-0.5.0a1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+ngio-0.5.0a1.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
+ngio-0.5.0a1.dist-info/RECORD,,

{ngio-0.5.0.dist-info → ngio-0.5.0a1.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: hatchling 1.28.0
+Generator: hatchling 1.27.0
 Root-Is-Purelib: true
 Tag: py3-none-any

ngio/images/_create_utils.py

@@ -1,406 +0,0 @@
-"""Utility functions for working with OME-Zarr images."""
-
-import warnings
-from collections.abc import Mapping, Sequence
-from typing import Any, Literal, TypeVar
-
-from zarr.core.array import CompressorLike
-
-from ngio.common._pyramid import ChunksLike, ImagePyramidBuilder, ShardsLike
-from ngio.ome_zarr_meta import (
-    NgioImageMeta,
-    NgioLabelMeta,
-    update_ngio_meta,
-)
-from ngio.ome_zarr_meta.ngio_specs import (
-    AxesHandler,
-    Channel,
-    ChannelsMeta,
-    DefaultNgffVersion,
-    DefaultSpaceUnit,
-    DefaultTimeUnit,
-    NgffVersions,
-    SpaceUnits,
-    TimeUnits,
-    build_axes_handler,
-    build_canonical_axes_handler,
-    canonical_axes_order,
-    canonical_label_axes_order,
-)
-from ngio.ome_zarr_meta.ngio_specs._axes import AxesSetup
-from ngio.utils import NgioValueError, StoreOrGroup, ZarrGroupHandler
-
-_image_or_label_meta = TypeVar("_image_or_label_meta", NgioImageMeta, NgioLabelMeta)
-
-
-def _align_to_axes(
-    *,
-    values: dict[str, float],
-    axes_handler: AxesHandler,
-    default_value: float = 1.0,
-) -> tuple[float, ...]:
-    """Align given values to axes names."""
-    aligned_values = [default_value] * len(axes_handler.axes_names)
-    for ax, value in values.items():
-        index = axes_handler.get_index(ax)
-        if index is not None:
-            aligned_values[index] = value
-    return tuple(aligned_values)
-
-
-def _check_deprecated_scaling_factors(
-    *,
-    yx_scaling_factor: float | tuple[float, float] | None = None,
-    z_scaling_factor: float | None = None,
-    scaling_factors: Sequence[float] | Literal["auto"] = "auto",
-    shape: tuple[int, ...],
-) -> Sequence[float] | Literal["auto"]:
-    if yx_scaling_factor is not None or z_scaling_factor is not None:
-        warnings.warn(
-            "The 'yx_scaling_factor' and 'z_scaling_factor' arguments are deprecated "
-            "and will be removed in ngio=0.6. Please use the 'scaling_factors' "
-            "argument instead.",
-            DeprecationWarning,
-            stacklevel=2,
-        )
-        if scaling_factors != "auto":
-            raise NgioValueError(
-                "Cannot use both 'scaling_factors' and deprecated "
-                "'yx_scaling_factor'/'z_scaling_factor' arguments."
-            )
-        if isinstance(yx_scaling_factor, tuple):
-            if len(yx_scaling_factor) != 2:
-                raise NgioValueError(
-                    "yx_scaling_factor tuple must have length 2 for y and x scaling."
-                )
-            y_scale = yx_scaling_factor[0]
-            x_scale = yx_scaling_factor[1]
-        else:
-            y_scale = yx_scaling_factor if yx_scaling_factor is not None else 2.0
-            x_scale = yx_scaling_factor if yx_scaling_factor is not None else 2.0
-        z_scale = z_scaling_factor if z_scaling_factor is not None else 1.0
-        scaling_factors = (z_scale, x_scale, y_scale)
-        if len(scaling_factors) < len(shape):
-            padding = (1.0,) * (len(shape) - len(scaling_factors))
-            scaling_factors = padding + scaling_factors
-
-        return scaling_factors
-    return scaling_factors
-
-
-def _compute_scaling_factors(
-    *,
-    scaling_factors: Sequence[float] | Literal["auto"],
-    shape: tuple[int, ...],
-    axes_handler: AxesHandler,
-    xy_scaling_factor: float | tuple[float, float] | None = None,
-    z_scaling_factor: float | None = None,
-) -> tuple[float, ...]:
-    """Compute scaling factors for given axes names."""
-    # TODO remove with ngio 0.6
-    scaling_factors = _check_deprecated_scaling_factors(
-        yx_scaling_factor=xy_scaling_factor,
-        z_scaling_factor=z_scaling_factor,
-        scaling_factors=scaling_factors,
-        shape=shape,
-    )
-    if scaling_factors == "auto":
-        return _align_to_axes(
-            values={
-                "x": 2.0,
-                "y": 2.0,
-                "z": 1.0,
-            },
-            axes_handler=axes_handler,
-        )
-    if len(scaling_factors) != len(shape):
-        raise NgioValueError(
-            "Length of scaling_factors does not match the number of dimensions."
-        )
-    return tuple(scaling_factors)
-
-
-def compute_base_scale(
-    *,
-    pixelsize: float | tuple[float, float],
-    z_spacing: float,
-    time_spacing: float,
-    axes_handler: AxesHandler,
-) -> tuple[float, ...]:
-    """Compute base scale for given axes names."""
-    if isinstance(pixelsize, tuple):
-        if len(pixelsize) != 2:
-            raise NgioValueError(
-                "pixelsize tuple must have length 2 for y and x pixel sizes."
-            )
-        x_size = pixelsize[1]
-        y_size = pixelsize[0]
-    else:
-        x_size = pixelsize
-        y_size = pixelsize
-    return _align_to_axes(
-        values={
-            "x": x_size,
-            "y": y_size,
-            "z": z_spacing,
-            "t": time_spacing,
-        },
-        axes_handler=axes_handler,
-    )
-
-
-def _create_image_like_group(
-    *,
-    store: StoreOrGroup,
-    pyramid_builder: ImagePyramidBuilder,
-    meta: _image_or_label_meta,
-    overwrite: bool = False,
-) -> ZarrGroupHandler:
-    """Advanced create empty image container function placeholder."""
-    mode = "w" if overwrite else "w-"
-    group_handler = ZarrGroupHandler(
-        store=store, mode=mode, cache=False, zarr_format=meta.zarr_format
-    )
-    update_ngio_meta(group_handler, meta)
-    # Reopen in r+ mode
-    group_handler = group_handler.reopen_handler()
-    # Write the pyramid
-    pyramid_builder.to_zarr(group=group_handler.group)
-    return group_handler
-
-
-def _add_channels_meta(
-    *,
-    meta: _image_or_label_meta,
-    channels_meta: Sequence[str | Channel] | None = None,
-) -> _image_or_label_meta:
-    """Create ChannelsMeta from given channels_meta input."""
-    if isinstance(meta, NgioLabelMeta):
-        if channels_meta is not None:
-            raise NgioValueError(
-                "Cannot add channels_meta to NgioLabelMeta. "
-                "Labels do not have channels."
-            )
-        else:
-            return meta
-    if channels_meta is None:
-        return meta
-    list_of_channels = []
-    for c in channels_meta:
-        if isinstance(c, str):
-            channel = Channel.default_init(label=c)
-        elif isinstance(c, Channel):
-            channel = c
-        else:
-            raise NgioValueError(
-                "channels_meta must be a list of strings or Channel objects."
-            )
-        list_of_channels.append(channel)
-
-    channels_meta_ = ChannelsMeta(channels=list_of_channels)
-    meta.set_channels_meta(channels_meta=channels_meta_)
-    return meta
-
-
-def _build_axes_handler(
-    *,
-    shape: tuple[int, ...],
-    meta_type: type[_image_or_label_meta],
-    axes_names: Sequence[str] | None = None,
-    axes_setup: AxesSetup | None = None,
-) -> AxesHandler:
-    """Build axes handler for given shape and axes names."""
-    if meta_type is NgioImageMeta:
-        canonical_axes_order_ = canonical_axes_order()
-    else:
-        canonical_axes_order_ = canonical_label_axes_order()
-    if axes_names is None:
-        axes_names = canonical_axes_order_[-len(shape) :]
-
-    if axes_setup is None:
-        return build_canonical_axes_handler(
-            axes_names=axes_names,
-            canonical_channel_order=canonical_axes_order_,
-        )
-    return build_axes_handler(
-        axes_names=axes_names,
-        axes_setup=axes_setup,
-    )
-
-
-def init_image_like(
-    *,
-    # Where to create the image
-    store: StoreOrGroup,
-    # Ngff image parameters
-    meta_type: type[_image_or_label_meta],
-    shape: Sequence[int],
-    pixelsize: float | tuple[float, float],
-    z_spacing: float = 1.0,
-    time_spacing: float = 1.0,
-    scaling_factors: Sequence[float] | Literal["auto"] = "auto",
-    levels: int | list[str] = 5,
-    translation: Sequence[float] | None = None,
-    space_unit: SpaceUnits | str | None = DefaultSpaceUnit,
-    time_unit: TimeUnits | str | None = DefaultTimeUnit,
-    axes_names: Sequence[str] | None = None,
-    name: str | None = None,
-    channels_meta: Sequence[str | Channel] | None = None,
-    ngff_version: NgffVersions = DefaultNgffVersion,
-    # Zarr Array parameters
-    chunks: ChunksLike = "auto",
-    shards: ShardsLike | None = None,
-    dtype: str = "uint16",
-    dimension_separator: Literal[".", "/"] = "/",
-    compressors: CompressorLike = "auto",
-    extra_array_kwargs: Mapping[str, Any] | None = None,
-    # internal axes configuration for advanced use cases
-    axes_setup: AxesSetup | None = None,
-    # Whether to overwrite existing image
-    overwrite: bool = False,
-    # Deprecated arguments
-    yx_scaling_factor: float | tuple[float, float] | None = None,
-    z_scaling_factor: float | None = None,
-) -> tuple[ZarrGroupHandler, AxesSetup]:
-    """Create an empty OME-Zarr image with the given shape and metadata."""
-    shape = tuple(shape)
-    axes_handler = _build_axes_handler(
-        shape=shape,
-        meta_type=meta_type,
-        axes_names=axes_names,
-        axes_setup=axes_setup,
-    )
-    if len(shape) != len(axes_handler.axes_names):
-        raise NgioValueError(
-            f"Mismatch between shape {shape} "
-            f"and number of axes {len(axes_handler.axes_names)}."
-        )
-    base_scale = compute_base_scale(
-        pixelsize=pixelsize,
-        z_spacing=z_spacing,
-        time_spacing=time_spacing,
-        axes_handler=axes_handler,
-    )
-    scaling_factors = _compute_scaling_factors(
-        scaling_factors=scaling_factors,
-        shape=shape,
-        axes_handler=axes_handler,
-        xy_scaling_factor=yx_scaling_factor,
-        z_scaling_factor=z_scaling_factor,
-    )
-    if isinstance(levels, int):
-        levels_paths = tuple(str(i) for i in range(levels))
-    else:
-        levels_paths = tuple(levels)
-
-    pyramid_builder = ImagePyramidBuilder.from_scaling_factors(
-        levels_paths=levels_paths,
-        scaling_factors=scaling_factors,
-        base_shape=shape,
-        base_scale=base_scale,
-        base_translation=translation,
-        axes=axes_handler.axes_names,
-        chunks=chunks,
-        data_type=dtype,
-        dimension_separator=dimension_separator,
-        compressors=compressors,
-        shards=shards,
-        zarr_format=2 if ngff_version == "0.4" else 3,
-        other_array_kwargs=extra_array_kwargs,
-    )
-    meta = meta_type.default_init(
-        levels=[p.path for p in pyramid_builder.levels],
-        axes_handler=axes_handler,
-        scales=[p.scale for p in pyramid_builder.levels],
-        translations=[p.translation for p in pyramid_builder.levels],
-        name=name,
-        version=ngff_version,
-    )
-    meta = _add_channels_meta(meta=meta, channels_meta=channels_meta)
-    # Keep this creation at the end to avoid partial creations on errors
-    image_handler = _create_image_like_group(
-        store=store,
-        pyramid_builder=pyramid_builder,
-        meta=meta,
-        overwrite=overwrite,
-    )
-    return image_handler, axes_handler.axes_setup
-
-
-def init_image_like_from_shapes(
-    *,
-    # Where to create the image
-    store: StoreOrGroup,
-    # Ngff image parameters
-    meta_type: type[_image_or_label_meta],
-    shapes: Sequence[tuple[int, ...]],
-    base_scale: tuple[float, ...] | list[tuple[float, ...]],
-    levels: list[str] | None = None,
-    translation: Sequence[float] | None = None,
-    space_unit: SpaceUnits | str | None = DefaultSpaceUnit,
-    time_unit: TimeUnits | str | None = DefaultTimeUnit,
-    axes_names: Sequence[str] | None = None,
-    name: str | None = None,
-    channels_meta: Sequence[str | Channel] | None = None,
-    ngff_version: NgffVersions = DefaultNgffVersion,
-    # Zarr Array parameters
-    chunks: ChunksLike = "auto",
-    shards: ShardsLike | None = None,
-    dtype: str = "uint16",
-    dimension_separator: Literal[".", "/"] = "/",
-    compressors: CompressorLike = "auto",
-    extra_array_kwargs: Mapping[str, Any] | None = None,
-    # internal axes configuration for advanced use cases
-    axes_setup: AxesSetup | None = None,
-    # Whether to overwrite existing image
-    overwrite: bool = False,
-) -> tuple[ZarrGroupHandler, AxesSetup]:
-    """Create an empty OME-Zarr image with the given shape and metadata."""
-    base_shape = shapes[0]
-    axes_handler = _build_axes_handler(
-        shape=base_shape,
-        meta_type=meta_type,
-        axes_names=axes_names,
-        axes_setup=axes_setup,
-    )
-    if len(base_shape) != len(axes_handler.axes_names):
-        raise NgioValueError(
-            f"Mismatch between shape {base_shape} "
-            f"and number of axes {len(axes_handler.axes_names)}."
-        )
-    if levels is None:
-        levels_paths = tuple(str(i) for i in range(len(shapes)))
-    else:
-        levels_paths = tuple(levels)
-
-    pyramid_builder = ImagePyramidBuilder.from_shapes(
-        shapes=shapes,
-        base_scale=base_scale,
-        base_translation=translation,
-        levels_paths=levels_paths,
-        axes=axes_handler.axes_names,
-        chunks=chunks,
-        data_type=dtype,
-        dimension_separator=dimension_separator,
-        compressors=compressors,
-        shards=shards,
-        zarr_format=2 if ngff_version == "0.4" else 3,
-        other_array_kwargs=extra_array_kwargs,
-    )
-    meta = meta_type.default_init(
-        levels=[p.path for p in pyramid_builder.levels],
-        axes_handler=axes_handler,
-        scales=[p.scale for p in pyramid_builder.levels],
-        translations=[p.translation for p in pyramid_builder.levels],
-        name=name,
-        version=ngff_version,
-    )
-    meta = _add_channels_meta(meta=meta, channels_meta=channels_meta)
-    # Keep this creation at the end to avoid partial creations on errors
-    image_handler = _create_image_like_group(
-        store=store,
-        pyramid_builder=pyramid_builder,
-        meta=meta,
-        overwrite=overwrite,
-    )
-    return image_handler, axes_handler.axes_setup