ngio 0.4.0a2__py3-none-any.whl → 0.4.0a4__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (51) hide show
  1. ngio/__init__.py +1 -2
  2. ngio/common/__init__.py +2 -51
  3. ngio/common/_dimensions.py +223 -64
  4. ngio/common/_pyramid.py +42 -23
  5. ngio/common/_roi.py +94 -418
  6. ngio/common/_zoom.py +32 -7
  7. ngio/experimental/iterators/_abstract_iterator.py +2 -2
  8. ngio/experimental/iterators/_feature.py +10 -15
  9. ngio/experimental/iterators/_image_processing.py +18 -28
  10. ngio/experimental/iterators/_rois_utils.py +6 -6
  11. ngio/experimental/iterators/_segmentation.py +38 -54
  12. ngio/images/_abstract_image.py +136 -94
  13. ngio/images/_create.py +16 -0
  14. ngio/images/_create_synt_container.py +10 -0
  15. ngio/images/_image.py +33 -9
  16. ngio/images/_label.py +24 -3
  17. ngio/images/_masked_image.py +60 -81
  18. ngio/images/_ome_zarr_container.py +34 -1
  19. ngio/io_pipes/__init__.py +49 -0
  20. ngio/io_pipes/_io_pipes.py +286 -0
  21. ngio/io_pipes/_io_pipes_masked.py +481 -0
  22. ngio/io_pipes/_io_pipes_roi.py +143 -0
  23. ngio/io_pipes/_io_pipes_utils.py +299 -0
  24. ngio/io_pipes/_match_shape.py +376 -0
  25. ngio/io_pipes/_ops_axes.py +146 -0
  26. ngio/io_pipes/_ops_slices.py +218 -0
  27. ngio/io_pipes/_ops_transforms.py +104 -0
  28. ngio/io_pipes/_zoom_transform.py +175 -0
  29. ngio/ome_zarr_meta/__init__.py +6 -2
  30. ngio/ome_zarr_meta/ngio_specs/__init__.py +6 -4
  31. ngio/ome_zarr_meta/ngio_specs/_axes.py +182 -70
  32. ngio/ome_zarr_meta/ngio_specs/_dataset.py +47 -121
  33. ngio/ome_zarr_meta/ngio_specs/_ngio_image.py +30 -22
  34. ngio/ome_zarr_meta/ngio_specs/_pixel_size.py +17 -1
  35. ngio/ome_zarr_meta/v04/_v04_spec_utils.py +33 -30
  36. ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png +0 -0
  37. ngio/resources/__init__.py +1 -0
  38. ngio/resources/resource_model.py +1 -0
  39. ngio/tables/v1/_roi_table.py +11 -3
  40. ngio/{common/transforms → transforms}/__init__.py +1 -1
  41. ngio/transforms/_zoom.py +19 -0
  42. ngio/utils/_zarr_utils.py +5 -1
  43. {ngio-0.4.0a2.dist-info → ngio-0.4.0a4.dist-info}/METADATA +1 -1
  44. ngio-0.4.0a4.dist-info/RECORD +83 -0
  45. ngio/common/_array_io_pipes.py +0 -554
  46. ngio/common/_array_io_utils.py +0 -508
  47. ngio/common/transforms/_label.py +0 -12
  48. ngio/common/transforms/_zoom.py +0 -109
  49. ngio-0.4.0a2.dist-info/RECORD +0 -76
  50. {ngio-0.4.0a2.dist-info → ngio-0.4.0a4.dist-info}/WHEEL +0 -0
  51. {ngio-0.4.0a2.dist-info → ngio-0.4.0a4.dist-info}/licenses/LICENSE +0 -0
ngio-0.4.0a2.dist-info/RECORD DELETED
@@ -1,76 +0,0 @@
1
- ngio/__init__.py,sha256=clqwRwmkalSwXvmNLGwtI-385gwvBTnJjohEk3Xp5cE,1463
2
- ngio/common/__init__.py,sha256=t5FUH7kSTqTT1jHmL_qYiEUCHHwMEKNfcZ6EbrkcpNg,1958
3
- ngio/common/_array_io_pipes.py,sha256=zxZIVRtPjWUQ8J09_s5RcwoTgCOHDGmYYrkdPQbOPlM,18221
4
- ngio/common/_array_io_utils.py,sha256=LktLM2_2LkjYkwzyJXHZ0LyuwrQN4GYTqgpByBxNmlg,16303
5
- ngio/common/_dimensions.py,sha256=ubBSmnQmZOmen1jUn3LWZlNXCjUuV9FTjZWzUYidOwk,4852
6
- ngio/common/_masking_roi.py,sha256=ZZTXordEZoq_ADk0OzADvq-5dPOwUBSuNobzFR8fpTw,5697
7
- ngio/common/_pyramid.py,sha256=ElY_nBcchN3eeD9obLZ31IIo42HVlDn8R-legQpNxzQ,7503
8
- ngio/common/_roi.py,sha256=SJ_YJx5hR35T_OIx7ev9Y-rXInu7B4VEh8VKgcsdkcg,21166
9
- ngio/common/_synt_images_utils.py,sha256=B6uYOW1NyrM06YMR-csca3_YnAAkPRTbvnbLdy9tk9E,3188
10
- ngio/common/_zoom.py,sha256=p_trkLLrNM6hYvchJQJOHfYpzSlzzdDJmcyTx6K5J1M,6030
11
- ngio/common/transforms/__init__.py,sha256=Dn8SpMw_e_bg9kx4ZVPrGHJIu_yOK1FkIlePlN_C7FQ,120
12
- ngio/common/transforms/_label.py,sha256=_bTK_E0BCWTno-qg3cf4voAB8OLJuEZ-4l0YgEXgl44,424
13
- ngio/common/transforms/_zoom.py,sha256=mbnPnJZsCCms5x1Tq2akvsRDbsDYomiNRGqiF6KY2nI,3751
14
- ngio/experimental/__init__.py,sha256=3pmBtHi-i8bKjTsvrOJM56ZyRX3Pv_dceCdt88-8COQ,147
15
- ngio/experimental/iterators/__init__.py,sha256=on_sUvuRhHBb7-r5u3Ojvu6K9FGjUOrWGUkLQ4aRzbs,556
16
- ngio/experimental/iterators/_abstract_iterator.py,sha256=p8ZxQuoqPGLZCp79FprhgV-QsN5uuqadffoXnEqSdys,5533
17
- ngio/experimental/iterators/_feature.py,sha256=6uONbB527SS2NLlpiFtL3AVOazH-QpGhETLEt8pykgU,5987
18
- ngio/experimental/iterators/_image_processing.py,sha256=4U2FCS5pyDes9VJAGbQn7_e8YMs2TU0ocVr2m1QZhYA,6639
19
- ngio/experimental/iterators/_rois_utils.py,sha256=LfBKk2XEY-UuomT_9uOg-0b0_GUo6IX5h0OJmrbMs4g,4375
20
- ngio/experimental/iterators/_segmentation.py,sha256=pCR2eR5LUMV5nouw6vRDjIyIabnvfxp7cE6sukW4GZc,11220
21
- ngio/hcs/__init__.py,sha256=G8j9vD-liLeB_UeGtKYIgshWvJnUA6ks9GwjvWBLdHs,357
22
- ngio/hcs/_plate.py,sha256=qfRwbCKaoz_AWTi8RDFFwOxy5geSknfJrPcqFVno9zI,44288
23
- ngio/images/__init__.py,sha256=9Whvt7GTiCgT_vXaEEqGnDaY1-UsRk3dhLTv091F_g4,1211
24
- ngio/images/_abstract_image.py,sha256=AmulSId7WMpKke1ROshxX1hYLHHNQMBy_4F4aPkE-Jw,15601
25
- ngio/images/_create.py,sha256=X0EalQgrcdh_RVgSxIkv0YNQydKXNRpCXHlgn1oVpI0,9445
26
- ngio/images/_create_synt_container.py,sha256=XjsQjBEnEGiqrfyKBdp_h4dJmScBMpMg1yUEqObo7Nw,5004
27
- ngio/images/_image.py,sha256=4PwHsD0KiiJwcyuVX4-iuLCv6V05N6JlCDlEggyLJkw,31742
28
- ngio/images/_label.py,sha256=rv6-oigkpa5mUTdogdPhfC3JYkEbdjXxY6Y6f1oD-RI,10603
29
- ngio/images/_masked_image.py,sha256=oFApCcPejfapzilh3ecO2NmI_FReU1FJPc-8XJqsYYU,19619
30
- ngio/images/_ome_zarr_container.py,sha256=uMQcvfwKj1uL3LG6k7pBQuPfG0KiM94fcf3kP7fu9eg,36705
31
- ngio/images/_table_ops.py,sha256=jFv_AMqoB4JBpoWsMtZppZVW7dAOC_u-JpfNm8b33kY,15292
32
- ngio/ome_zarr_meta/__init__.py,sha256=oZ8PEsWM7U0KwzpsnvVfX9k4UfuTz5sZ8B6B9eY5hyY,1193
33
- ngio/ome_zarr_meta/_meta_handlers.py,sha256=ctknNDT8jxwyvxQf9on5gW31H1tRRsnneO38GT2UXoE,25880
34
- ngio/ome_zarr_meta/ngio_specs/__init__.py,sha256=9mYKQ-1LqIa20dN_cuUuUf_w-V39Y0HdeB8UKqSrpfQ,1660
35
- ngio/ome_zarr_meta/ngio_specs/_axes.py,sha256=S10x-8yObaGD6HEirkfMjrVGWnIHlDd52_RdYBTfjY0,17498
36
- ngio/ome_zarr_meta/ngio_specs/_channels.py,sha256=CVsbG52U31TaMdTj8XqvClUdBya2Ar3qBjDo_xhP-NM,16967
37
- ngio/ome_zarr_meta/ngio_specs/_dataset.py,sha256=bYbqBneOmASGiV_D1sgng3odtbo0ICWdqDs7au99PSU,5844
38
- ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py,sha256=N1CGPOubwf0pvm8tiTnh-C1cOu9lToyDe3WagnEnPN4,17207
39
- ngio/ome_zarr_meta/ngio_specs/_ngio_image.py,sha256=Q4bJjU_53-Lw2qrVaw07PKwjaHLmHZy7JIwM8dkqFeg,15689
40
- ngio/ome_zarr_meta/ngio_specs/_pixel_size.py,sha256=5TT8250XdCKUnk3OwZeyXIMNFKOg_jx4NnoCo9RLsXI,4079
41
- ngio/ome_zarr_meta/v04/__init__.py,sha256=dJRzzxyYc81kf-0Hip_bqvbdManaM8XTdQX2meWyCSs,583
42
- ngio/ome_zarr_meta/v04/_custom_models.py,sha256=5GxiDERvLuvq4QvApcA6EiKLS6hLFX1R0R_9rSaa85A,530
43
- ngio/ome_zarr_meta/v04/_v04_spec_utils.py,sha256=YKBVVWb3mnuE-5L5k1i85WpHmcrbKl9k5KU2jNqt5yg,15868
44
- ngio/resources/__init__.py,sha256=Hry2odzDaC471_qgVfAQVnWDMK0Io9F8m9_JBNNm4e0,1633
45
- ngio/resources/resource_model.py,sha256=0Egs0QAJ5PNknqECHuBd_-ZTdi8EDNirt5VyuPdbg30,835
46
- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/mask.png,sha256=g3QmxQdmeciAtBe5cTCRfR6yw3keG9cBYfjizMo6EGo,11890
47
- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png,sha256=QhZ4XiFX7r-8-fbX8wSeUymktX85Ap3Nw1MqeOfRrF8,21649
48
- ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg,sha256=82lejQAIokj5w9g-qqhysDTWpHtNvJTkdURG_BjqIxQ,37743
49
- ngio/tables/__init__.py,sha256=_BV3sclNMLITu_J8_3DkkUrCB6Kro0HzeWLDCD1ivKM,877
50
- ngio/tables/_abstract_table.py,sha256=rwGa47TzbFmosucBWVfFq6JEXtgGvOdUVtU9DIelV88,8204
51
- ngio/tables/_tables_container.py,sha256=3xmpREaN671l40MPprnl1BD-VoOb6xfjECb5mNoMW0w,12173
52
- ngio/tables/backends/__init__.py,sha256=MwSRXNF1rWQBFOTDA_vT3oGoNZpviVgytsL5Txnu08I,1619
53
- ngio/tables/backends/_abstract_backend.py,sha256=54Vh9yPfLx1NixGVfFkW4msD51nsim0zIfHRnO80Xt8,7276
54
- ngio/tables/backends/_anndata.py,sha256=97RWG4Hjc42JBxm-YxjHEU8HHd14NiayelKlI1PTsCo,2868
55
- ngio/tables/backends/_anndata_utils.py,sha256=HsmP27fm7JW1kjahl4lUnnViK_iqmu2bnsu86z43U98,3116
56
- ngio/tables/backends/_csv.py,sha256=Ev61D-AUKo4LIhXRmWPJgYbHI7eQdxiajQR574DevEM,932
57
- ngio/tables/backends/_json.py,sha256=1ZsEuXDJm1rOZV_KjFm8CB0qhv7L1W7L2EGWPf4q_p0,3137
58
- ngio/tables/backends/_non_zarr_backends.py,sha256=BybUl800pqCdqJJmsGnUi4jsH1ibpQSUl0ZnumkFDwY,7298
59
- ngio/tables/backends/_parquet.py,sha256=ic-p86h8lce8q9luBJGRzy6vxlWyJvA0-2l5cUD6OqY,1398
60
- ngio/tables/backends/_table_backends.py,sha256=ksP2NAosXZkNMZf-IMrLx7bjQgp_eKfvPYK4vMdT1A8,7250
61
- ngio/tables/backends/_utils.py,sha256=YFB7u2_l8lLAK_jrmlSfzH-2sOAFaDP1bmeUfuNo7YM,19719
62
- ngio/tables/v1/__init__.py,sha256=Wr1_9RZFpaN8FYMTnxT9Yjkw4AS7y9FMWailmB_uj5g,617
63
- ngio/tables/v1/_condition_table.py,sha256=T0Uq5BKkmMoEspt_Rx0U99Ow6S9GAMZDHqvUO5obCAM,1780
64
- ngio/tables/v1/_feature_table.py,sha256=n9uMHwoBh-_dlOhUXCFbmAjXFVXncNCR3SjE2qzXI68,3821
65
- ngio/tables/v1/_generic_table.py,sha256=1ktJHeuv7U1g5Z8PFUuTkCjOzcYMQd8xegKHKUedJB8,1240
66
- ngio/tables/v1/_roi_table.py,sha256=szhtLzHWW-DaDz_OsGK89ur-WpNufCSMvEc66DRzv8g,16867
67
- ngio/utils/__init__.py,sha256=XPYh8ehC7uXNU2cFFXZAw-S3DpWpX1Yq2xGkffZv5vI,1142
68
- ngio/utils/_datasets.py,sha256=2g-Neg78dNcqyDz39QQw-Ifp9GITHjVHisdqgvvDNDE,5475
69
- ngio/utils/_errors.py,sha256=pKQ12LUjQLYE1nUawemA5h7HsgznjaSvV1n2PQU33N0,759
70
- ngio/utils/_fractal_fsspec_store.py,sha256=RdcCFOgHexRKX9zZvJV5RI-5OPc7VOPS6q_IeRxm24I,1548
71
- ngio/utils/_logger.py,sha256=N5W0a_xwze4blS1MolidBkTMbjTbg8GPguJZNun3mAE,1392
72
- ngio/utils/_zarr_utils.py,sha256=aYHhjHWGy5Jx7IkPb4nt9N0-HgyvJnyvK9GGqnccZkE,13606
73
- ngio-0.4.0a2.dist-info/METADATA,sha256=Wd5zLtu8OLbjEbgV9Lb5FDlBP9dFT9QU4S8h2358jKc,5868
74
- ngio-0.4.0a2.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
75
- ngio-0.4.0a2.dist-info/licenses/LICENSE,sha256=UgN_a1QCeNh9rZWfz-wORQFxE3elQzLWPQaoK6N6fxQ,1502
76
- ngio-0.4.0a2.dist-info/RECORD,,
{ngio-0.4.0a2.dist-info → ngio-0.4.0a4.dist-info}/WHEEL RENAMED
File without changes