nettracer3d 1.1.1__py3-none-any.whl → 1.2.4__py3-none-any.whl

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@@ -1,10 +1,9 @@
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  Metadata-Version: 2.4
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  Name: nettracer3d
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- Version: 1.1.1
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+ Version: 1.2.4
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  Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
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  Author-email: Liam McLaughlin <liamm@wustl.edu>
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  Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/
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- Project-URL: Video_Tutorial, https://www.youtube.com/watch?v=cRatn5VTWDY
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  Project-URL: Reference_Citation_For_Use, https://doi.org/10.1101/2024.07.29.605633
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  Classifier: Programming Language :: Python :: 3
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  Classifier: License :: Other/Proprietary License
@@ -101,8 +100,6 @@ While not related to NetTracer3D, if you want to use Cellpose3 (for which GPU-us
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  This gui is built from the PyQt6 package and therefore may not function on dockers or virtual envs that are unable to support PyQt6 displays.
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- For a (slightly outdated) video tutorial on using the GUI: https://www.youtube.com/watch?v=cRatn5VTWDY
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  NetTracer3D is free to use/fork for academic/nonprofit use so long as citation is provided, and is available for commercial use at a fee (see license file for information).
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  The current citation is here:
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@@ -110,6 +107,9 @@ McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neuro
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  NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
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- -- Version 1.1.1 Updates --
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+ -- Version 1.2.4 Updates --
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- * Can now intermittently downsample while making the network and id overlays now to make their relevant elements larger in the actual rendered output.
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+ * Fixed bug for calculating surface area when the surface was on the edge of the image.
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+ * Removed video tutorial from youtube for being outdated. May add new one later.
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@@ -0,0 +1,29 @@
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+ nettracer3d/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ nettracer3d/branch_stitcher.py,sha256=gyDVPUnApS2jmlIglJoRVEVY8WXLqwpr0_8rNdvy9u0,16402
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+ nettracer3d/cellpose_manager.py,sha256=NfRqW6Zl7yRU4qHCS_KjmR0R6QANSSgCO0_dr-eivxg,6694
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+ nettracer3d/community_extractor.py,sha256=rPXXWwMX05mfD_ogULEouLy8CST-aOaoSw45NhloKVg,31754
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+ nettracer3d/excelotron.py,sha256=aNof6k-DgMxVyFgsl3ltSCxG4vZW49cuvCBzfzhYhUY,75072
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+ nettracer3d/filaments.py,sha256=ks3-ThdHRKu5hPk04R_YHAmVpwCqXraR0LWW0VRlAts,43693
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+ nettracer3d/modularity.py,sha256=pborVcDBvICB2-g8lNoSVZbIReIBlfeBmjFbPYmtq7Y,22443
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+ nettracer3d/morphology.py,sha256=QlBPsJAswBoinjZuouNwEfGEGwclvenlZ1Vmo288QLo,23287
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+ nettracer3d/neighborhoods.py,sha256=Bje77gWzXRIYyXkDlnFQnbUALnIt8dheLXHVFQsAKuc,53156
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+ nettracer3d/nettracer.py,sha256=9iQ51fvYUNsHA90lZd4cEVz_4AZZToTy22SjJoZNPHY,294254
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+ nettracer3d/nettracer_gui.py,sha256=oStQZCqzi_nDFq8NKjMA1n0cuMv77gKekOd6XQFO5H4,742021
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+ nettracer3d/network_analysis.py,sha256=kBzsVaq4dZkMe0k-VGvQIUvM-tK0ZZ8bvb-wtsugZRQ,46150
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+ nettracer3d/network_draw.py,sha256=Uw0w1MoFiYMirkdM_XDAfy_m5_MoVaZkkGpoYzN9_-c,14259
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+ nettracer3d/node_draw.py,sha256=LeSftKJiNGkC7cpBJuf8Y9JeTUaUjcD6I2byclmZCb4,10484
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+ nettracer3d/painting.py,sha256=K_dwngivw80r-Yyg4btKMsWGn566ZE9PnrQl986uxJE,23497
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+ nettracer3d/proximity.py,sha256=Q3FxRpihV4ck7SUKrmceBRK1P32xZiLNzbUcr4PpnBM,46717
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+ nettracer3d/run.py,sha256=xYeaAc8FCx8MuzTGyL3NR3mK7WZzffAYAH23bNRZYO4,127
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+ nettracer3d/segmenter.py,sha256=20ch_uLqedV9srwT1eL5eFs88ojkb2gELWJKgtYk2qk,72791
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+ nettracer3d/segmenter_GPU.py,sha256=FwzevixleTUoRmwVa8jPPzW82RZoC6nL2eEeZ4-2ZR8,80015
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+ nettracer3d/simple_network.py,sha256=dkG4jpc4zzdeuoaQobgGfL3PNo6N8dGKQ5hEEubFIvA,9947
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+ nettracer3d/smart_dilate.py,sha256=gtL7hxzae93PJQsGLnUrwQ6Wb0evnHHREh0rHyUh_48,28644
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+ nettracer3d/stats.py,sha256=0YwrVLeEvll3PlbL5-0_9dstldr48PvxJrQm-PiC8jY,36607
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+ nettracer3d/tutorial.py,sha256=cUxiBf5RaBTtr9uJ2qoxZjRkcAY8mrvS9_LEqiwoxLc,153564
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+ nettracer3d-1.2.4.dist-info/licenses/LICENSE,sha256=jnNT-yBeIAKAHpYthPvLeqCzJ6nSurgnKmloVnfsjCI,764
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+ nettracer3d-1.2.4.dist-info/METADATA,sha256=snQxa9urY2-QGfYTHg0cpeUfNuCa2qhfRum9aMD1otk,6971
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+ nettracer3d-1.2.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ nettracer3d-1.2.4.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
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+ nettracer3d-1.2.4.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
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+ nettracer3d-1.2.4.dist-info/RECORD,,
@@ -1,26 +0,0 @@
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- nettracer3d/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- nettracer3d/cellpose_manager.py,sha256=NfRqW6Zl7yRU4qHCS_KjmR0R6QANSSgCO0_dr-eivxg,6694
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- nettracer3d/community_extractor.py,sha256=rPXXWwMX05mfD_ogULEouLy8CST-aOaoSw45NhloKVg,31754
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- nettracer3d/excelotron.py,sha256=aNof6k-DgMxVyFgsl3ltSCxG4vZW49cuvCBzfzhYhUY,75072
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- nettracer3d/modularity.py,sha256=pborVcDBvICB2-g8lNoSVZbIReIBlfeBmjFbPYmtq7Y,22443
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- nettracer3d/morphology.py,sha256=yYMeV8DRZXJhFSm4bI3VYA562AG2dlp2sqqnnNazqtQ,23128
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- nettracer3d/neighborhoods.py,sha256=lh4_zuTwgTq-u8VHy72buBfZf58FEJo9sH3IIBuZr68,52735
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- nettracer3d/nettracer.py,sha256=6_I-iuYQVztJYp9g0Imd9dC1tTdtcklj7xXh2dnoWtU,277948
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- nettracer3d/nettracer_gui.py,sha256=dIWogXv1tn6bylBKoPSnNoNEmOIN7CX2n-9YiyW0IMI,686490
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- nettracer3d/network_analysis.py,sha256=kBzsVaq4dZkMe0k-VGvQIUvM-tK0ZZ8bvb-wtsugZRQ,46150
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- nettracer3d/network_draw.py,sha256=F7fw6Pcf4qWOhdKwLmhwqWdschbDlHzwCVolQC9imeU,14117
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- nettracer3d/node_draw.py,sha256=kZcR1PekLg0riioNeGcALIXQyZ5PtHA_9MT6z7Zovdk,10401
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- nettracer3d/painting.py,sha256=K_dwngivw80r-Yyg4btKMsWGn566ZE9PnrQl986uxJE,23497
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- nettracer3d/proximity.py,sha256=WaHPwE6ypeInFO_LnMT0zaVE53jX3TJx6h7nmtYtr8U,41824
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- nettracer3d/run.py,sha256=xYeaAc8FCx8MuzTGyL3NR3mK7WZzffAYAH23bNRZYO4,127
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- nettracer3d/segmenter.py,sha256=20ch_uLqedV9srwT1eL5eFs88ojkb2gELWJKgtYk2qk,72791
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- nettracer3d/segmenter_GPU.py,sha256=FwzevixleTUoRmwVa8jPPzW82RZoC6nL2eEeZ4-2ZR8,80015
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- nettracer3d/simple_network.py,sha256=dkG4jpc4zzdeuoaQobgGfL3PNo6N8dGKQ5hEEubFIvA,9947
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- nettracer3d/smart_dilate.py,sha256=TvRUh6B4q4zIdCO1BWH-xgTdND5OUNmo99eyxG9oIAU,27145
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- nettracer3d/stats.py,sha256=0YwrVLeEvll3PlbL5-0_9dstldr48PvxJrQm-PiC8jY,36607
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- nettracer3d-1.1.1.dist-info/licenses/LICENSE,sha256=jnNT-yBeIAKAHpYthPvLeqCzJ6nSurgnKmloVnfsjCI,764
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- nettracer3d-1.1.1.dist-info/METADATA,sha256=shsjG8EKveSVNHtGdqedVuOzUH4SUKUYltE0J7m8G7s,7125
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- nettracer3d-1.1.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- nettracer3d-1.1.1.dist-info/entry_points.txt,sha256=Nx1rr_0QhJXDBHAQg2vcqCzLMKBzSHfwy3xwGkueVyc,53
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- nettracer3d-1.1.1.dist-info/top_level.txt,sha256=zsYy9rZwirfCEOubolhee4TyzqBAL5gSUeFMzhFTX8c,12
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- nettracer3d-1.1.1.dist-info/RECORD,,