ncbi-datasets-pyclient 18.14.0__py3-none-any.whl → 18.16.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ncbi/datasets/openapi/__init__.py +23 -1
- ncbi/datasets/openapi/api/organelle_api.py +24 -24
- ncbi/datasets/openapi/api/virus_api.py +132 -132
- ncbi/datasets/openapi/api_client.py +1 -1
- ncbi/datasets/openapi/configuration.py +1 -1
- ncbi/datasets/openapi/models/__init__.py +11 -0
- ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_accessions_reply.py +87 -0
- ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_check_m_histogram_request.py +87 -0
- ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_data_report_draft_request.py +89 -0
- ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_data_reports_request.py +87 -0
- ncbi/datasets/openapi/models/ncbigsupgcolv2_chromosome_location.py +54 -0
- ncbi/datasets/openapi/models/ncbigsupgcolv2_chromosome_type.py +42 -0
- ncbi/datasets/openapi/models/ncbigsupgcolv2_sequence_accession_request.py +87 -0
- ncbi/datasets/openapi/models/ncbiprotddv2_parsed_abstract.py +107 -0
- ncbi/datasets/openapi/models/ncbiprotddv2_parsed_abstract_author.py +89 -0
- ncbi/datasets/openapi/models/ncbiprotddv2_parsed_abstract_epub.py +93 -0
- ncbi/datasets/openapi/models/ncbiprotddv2_pubmed_abstract_request.py +87 -0
- ncbi/datasets/openapi/models/ncbiprotddv2_redundancy_level.py +1 -0
- ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_request.py +2 -2
- {ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/METADATA +14 -3
- {ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/RECORD +24 -13
- {ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/WHEEL +1 -1
- {ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/licenses/LICENSE +0 -0
- {ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/top_level.txt +0 -0
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# coding: utf-8
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"""
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NCBI Datasets API
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### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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The version of the OpenAPI document: v2
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Generated by OpenAPI Generator (https://openapi-generator.tech)
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Do not edit the class manually.
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""" # noqa: E501
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from __future__ import annotations
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import pprint
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import re # noqa: F401
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import json
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from pydantic import BaseModel, ConfigDict, StrictStr
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from typing import Any, ClassVar, Dict, List, Optional
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from typing import Optional, Set
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from typing_extensions import Self
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class Ncbiprotddv2ParsedAbstractAuthor(BaseModel):
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"""
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Ncbiprotddv2ParsedAbstractAuthor
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""" # noqa: E501
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surname: Optional[StrictStr] = None
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given_name_initials: Optional[StrictStr] = None
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__properties: ClassVar[List[str]] = ["surname", "given_name_initials"]
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model_config = ConfigDict(
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populate_by_name=True,
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validate_assignment=True,
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protected_namespaces=(),
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)
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def to_str(self) -> str:
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"""Returns the string representation of the model using alias"""
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return pprint.pformat(self.model_dump(by_alias=True))
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def to_json(self) -> str:
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"""Returns the JSON representation of the model using alias"""
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# TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
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return json.dumps(self.to_dict())
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@classmethod
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def from_json(cls, json_str: str) -> Optional[Self]:
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"""Create an instance of Ncbiprotddv2ParsedAbstractAuthor from a JSON string"""
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return cls.from_dict(json.loads(json_str))
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def to_dict(self) -> Dict[str, Any]:
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"""Return the dictionary representation of the model using alias.
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`self.model_dump(by_alias=True)`:
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* `None` is only added to the output dict for nullable fields that
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were set at model initialization. Other fields with value `None`
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are ignored.
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"""
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excluded_fields: Set[str] = set([
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_dict = self.model_dump(
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exclude=excluded_fields,
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)
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return _dict
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@classmethod
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def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
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"""Create an instance of Ncbiprotddv2ParsedAbstractAuthor from a dict"""
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return None
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if not isinstance(obj, dict):
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return cls.model_validate(obj)
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_obj = cls.model_validate({
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"surname": obj.get("surname"),
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"given_name_initials": obj.get("given_name_initials")
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})
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return _obj
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# coding: utf-8
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"""
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NCBI Datasets API
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### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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The version of the OpenAPI document: v2
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Generated by OpenAPI Generator (https://openapi-generator.tech)
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Do not edit the class manually.
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""" # noqa: E501
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from __future__ import annotations
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import pprint
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import re # noqa: F401
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import json
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from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
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from typing import Any, ClassVar, Dict, List, Optional
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from typing import Optional, Set
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from typing_extensions import Self
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class Ncbiprotddv2ParsedAbstractEpub(BaseModel):
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"""
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Ncbiprotddv2ParsedAbstractEpub
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""" # noqa: E501
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journal: Optional[StrictStr] = None
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year: Optional[StrictInt] = None
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volume: Optional[StrictInt] = None
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pages: Optional[StrictStr] = None
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__properties: ClassVar[List[str]] = ["journal", "year", "volume", "pages"]
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model_config = ConfigDict(
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populate_by_name=True,
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validate_assignment=True,
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protected_namespaces=(),
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)
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def to_str(self) -> str:
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"""Returns the string representation of the model using alias"""
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return pprint.pformat(self.model_dump(by_alias=True))
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def to_json(self) -> str:
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"""Returns the JSON representation of the model using alias"""
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# TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
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return json.dumps(self.to_dict())
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@classmethod
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def from_json(cls, json_str: str) -> Optional[Self]:
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"""Create an instance of Ncbiprotddv2ParsedAbstractEpub from a JSON string"""
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return cls.from_dict(json.loads(json_str))
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def to_dict(self) -> Dict[str, Any]:
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"""Return the dictionary representation of the model using alias.
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This has the following differences from calling pydantic's
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`self.model_dump(by_alias=True)`:
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* `None` is only added to the output dict for nullable fields that
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were set at model initialization. Other fields with value `None`
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are ignored.
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"""
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excluded_fields: Set[str] = set([
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_dict = self.model_dump(
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exclude=excluded_fields,
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return _dict
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@classmethod
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def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
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"""Create an instance of Ncbiprotddv2ParsedAbstractEpub from a dict"""
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return None
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if not isinstance(obj, dict):
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return cls.model_validate(obj)
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_obj = cls.model_validate({
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"journal": obj.get("journal"),
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"year": obj.get("year"),
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"volume": obj.get("volume"),
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"pages": obj.get("pages")
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# coding: utf-8
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"""
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NCBI Datasets API
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### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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The version of the OpenAPI document: v2
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Generated by OpenAPI Generator (https://openapi-generator.tech)
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Do not edit the class manually.
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""" # noqa: E501
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from __future__ import annotations
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import pprint
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import re # noqa: F401
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import json
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from pydantic import BaseModel, ConfigDict, StrictStr
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class Ncbiprotddv2PubmedAbstractRequest(BaseModel):
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Ncbiprotddv2PubmedAbstractRequest
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""" # noqa: E501
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pmid: Optional[StrictStr] = None
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__properties: ClassVar[List[str]] = ["pmid"]
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"""Returns the string representation of the model using alias"""
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return pprint.pformat(self.model_dump(by_alias=True))
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def to_json(self) -> str:
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"""Returns the JSON representation of the model using alias"""
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# TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
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return json.dumps(self.to_dict())
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def from_json(cls, json_str: str) -> Optional[Self]:
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"""Create an instance of Ncbiprotddv2PubmedAbstractRequest from a JSON string"""
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"""
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def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
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"""Create an instance of Ncbiprotddv2PubmedAbstractRequest from a dict"""
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__properties: ClassVar[List[str]] = ["sdid", "page_token", "redundancy_level", "sort_by", "hits_per_page"]
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})
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{ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/METADATA
RENAMED
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Metadata-Version: 2.4
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Name: ncbi-datasets-pyclient
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Version: 18.
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Version: 18.16.0
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Summary: NCBI Datasets API
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Home-page:
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Author: NCBI
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@@ -25,8 +25,8 @@ The NCBI Datasets version 2 API is updated often to add new features, fix bugs,
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This Python package is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project:
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- API version: v2
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- Package version: v18.
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- Generator version: 7.
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- Package version: v18.16.0
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- Generator version: 7.19.0
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- Build package: org.openapitools.codegen.languages.PythonClientCodegen
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## Requirements.
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## Documentation For Models
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- [Ncbigsupgcolv2AssemblyAccessionsReply](docs/Ncbigsupgcolv2AssemblyAccessionsReply.md)
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- [Ncbigsupgcolv2AssemblyCheckMHistogramRequest](docs/Ncbigsupgcolv2AssemblyCheckMHistogramRequest.md)
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- [Ncbigsupgcolv2AssemblyDataReportDraftRequest](docs/Ncbigsupgcolv2AssemblyDataReportDraftRequest.md)
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- [Ncbigsupgcolv2AssemblyDataReportsRequest](docs/Ncbigsupgcolv2AssemblyDataReportsRequest.md)
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- [Ncbigsupgcolv2ChromosomeLocation](docs/Ncbigsupgcolv2ChromosomeLocation.md)
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- [Ncbigsupgcolv2ChromosomeType](docs/Ncbigsupgcolv2ChromosomeType.md)
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- [Ncbigsupgcolv2SequenceAccessionRequest](docs/Ncbigsupgcolv2SequenceAccessionRequest.md)
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- [Ncbiprotddv2ChainFootprint](docs/Ncbiprotddv2ChainFootprint.md)
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- [Ncbiprotddv2ParsedAbstract](docs/Ncbiprotddv2ParsedAbstract.md)
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- [Ncbiprotddv2ParsedAbstractAuthor](docs/Ncbiprotddv2ParsedAbstractAuthor.md)
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- [Ncbiprotddv2ParsedAbstractEpub](docs/Ncbiprotddv2ParsedAbstractEpub.md)
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- [Ncbiprotddv2PubmedAbstractRequest](docs/Ncbiprotddv2PubmedAbstractRequest.md)
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- [Ncbiprotddv2QueryStructureDefinition](docs/Ncbiprotddv2QueryStructureDefinition.md)
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- [Ncbiprotddv2RedundancyLevel](docs/Ncbiprotddv2RedundancyLevel.md)
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{ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/RECORD
RENAMED
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ncbi/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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ncbi/datasets/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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ncbi/datasets/openapi/__init__.py,sha256=
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ncbi/datasets/openapi/api_client.py,sha256=
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ncbi/datasets/openapi/__init__.py,sha256=Mk-PsvR8LqQmve3jMMCQWtz-dVT_zzwIIDdWFqv-HHc,50329
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ncbi/datasets/openapi/api_client.py,sha256=lpW-JVIvLU_n1Dz15PkaF06YojCJq55U7WDlOAVOij8,27914
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ncbi/datasets/openapi/api_response.py,sha256=eMxw1mpmJcoGZ3gs9z6jM4oYoZ10Gjk333s9sKxGv7s,652
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ncbi/datasets/openapi/configuration.py,sha256=
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ncbi/datasets/openapi/configuration.py,sha256=JvrWml71inPlC5aeD4B2LwvTyupoAzHNFOUIf6BdAWE,19631
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ncbi/datasets/openapi/exceptions.py,sha256=xadY9SBMaA6_xxeVXrQxSZ0HAZzTsGyLV2K0FvEcyyM,6618
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ncbi/datasets/openapi/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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ncbi/datasets/openapi/rest.py,sha256=Ctofd5lL4uvuj0TGuAZJCuow61p24oeTTwncy8HlnuU,9742
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ncbi/datasets/openapi/api/bio_sample_api.py,sha256=nvtfxO09Nb7ewWRsytXl0d1isnc4Mc8h7_AKNYVEvdM,12032
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ncbi/datasets/openapi/api/gene_api.py,sha256=N3zPvT7mDP3oTOnexBop50xsDotuEEd5UjRYRF0gkkQ,542577
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ncbi/datasets/openapi/api/genome_api.py,sha256=Dmrp1zfeDn3-4j8CFthi-UQSjstKEEiKeLcD56kxh8g,616583
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ncbi/datasets/openapi/api/organelle_api.py,sha256=
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ncbi/datasets/openapi/api/organelle_api.py,sha256=pByg846dvlCrCgTAjn5BE8LJ4ZdUylLNnRMhe-nkzMQ,85182
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ncbi/datasets/openapi/api/prokaryote_api.py,sha256=dtb8wb05CoP5May7PgQlJjZEQVhdKFFWIDp3llsOvKE,29531
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ncbi/datasets/openapi/api/taxonomy_api.py,sha256=KoTvpjVcCaudZ54iyNyla6b9iAYTfRIag8eYeTQ1otw,265686
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ncbi/datasets/openapi/api/version_api.py,sha256=-u0LbcBTWXEdvjFMVC7B58W-7dp16GKHeB8kqK6FQ7Q,10525
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ncbi/datasets/openapi/api/virus_api.py,sha256=
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ncbi/datasets/openapi/models/__init__.py,sha256=
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ncbi/datasets/openapi/api/virus_api.py,sha256=aC_wIFVF5MvkWiJv02qrP_421mmwMdM23GQprmVYqPk,380049
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ncbi/datasets/openapi/models/__init__.py,sha256=YLQgH5oE0T4aZRi05cZvEHdnKJAJj8aw5YQ20h-SXsw,29519
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ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_accessions_reply.py,sha256=AWUYTpLsvzXhoSSwP5tPasPLXaJBBESZDxXW6zht6OA,2697
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ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_check_m_histogram_request.py,sha256=FayH7_ZcZQUha4Ur3IJGWms9ssMIj7bqNhQgo7NVX8s,2707
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ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_data_report_draft_request.py,sha256=6hMfNGZTpCfUG1J2XdW_hnlwwwbE0jo5Xja8y_2sYjY,2881
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ncbi/datasets/openapi/models/ncbigsupgcolv2_assembly_data_reports_request.py,sha256=E_eG4jq8hHYPzDRFCLQkOdiVvj5YzARrmTJhW6y2qjg,2713
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ncbi/datasets/openapi/models/ncbigsupgcolv2_chromosome_location.py,sha256=tYPeoxTzaWVyM6o1g9tiDjuIdxy17t_F1HuNzJQoomQ,1475
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ncbi/datasets/openapi/models/ncbigsupgcolv2_chromosome_type.py,sha256=milNKqMiLuWC1sv4XppYbY_hZSK0NiHpDGNbIwAODkE,1039
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ncbi/datasets/openapi/models/ncbigsupgcolv2_sequence_accession_request.py,sha256=6_NR49lU499HWOi-KunpLohSK-ao8nrHgrIPHozi7VI,2695
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ncbi/datasets/openapi/models/ncbiprotddv2_chain_footprint.py,sha256=8_GuyO6jpuEenXMtfIbbzy2SxqcdsX-BWgNiCzUUeDE,2985
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ncbi/datasets/openapi/models/ncbiprotddv2_parsed_abstract.py,sha256=TZInU3ClwzQ8YdfsE0hhh5GBs-JwJCUlbXkQvxsmxJY,3939
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ncbi/datasets/openapi/models/ncbiprotddv2_parsed_abstract_author.py,sha256=IJlLBB6rAUbzN6XIHkqPNrZ0gaAtvD6AcyKfK-unilY,2805
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ncbi/datasets/openapi/models/ncbiprotddv2_parsed_abstract_epub.py,sha256=t0GBYTTS9JrGgQNpZjCfqhdp1uk5KSrhktCqxMvnElQ,2924
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ncbi/datasets/openapi/models/ncbiprotddv2_pubmed_abstract_request.py,sha256=rhSfqMPjIvRL6ukxmad9R63GxqrAjLzWZ4EyvNjdHkY,2655
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ncbi/datasets/openapi/models/ncbiprotddv2_query_structure_definition.py,sha256=83S9XFg_tQXlGPS6N4XG-T_JBFU58HXfxVykZmllRb0,3188
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ncbi/datasets/openapi/models/ncbiprotddv2_redundancy_level.py,sha256=
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ncbi/datasets/openapi/models/ncbiprotddv2_redundancy_level.py,sha256=RrPUzexOEwd4dFiGxG5NrKC2BHKIwP9uZJ_r0fK1IuQ,958
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ncbi/datasets/openapi/models/ncbiprotddv2_sdid_request.py,sha256=5Hgvai33V7Gr0INCyvbDUJ2HqmSNkKOhHkvZRtEC_yI,2615
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ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_report.py,sha256=gcEXKL-sc4bZ8Mgi_sNR7eZ6oH-7NGnNbr4DK47AC5E,4784
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ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_report_page.py,sha256=bAsQba0OOq9c11_LQpD3ALz0TyFNzZv5J0Ac2iK-TPM,3647
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ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_request.py,sha256=
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ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_request.py,sha256=t8Hf97NjHpqAfc5DUy5mAozS0Yh8Fno0k5whKzIWQVY,3549
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ncbi/datasets/openapi/models/ncbiprotddv2_sort_by_id.py,sha256=2Auuv6Wkr8-OsAenP87Gn7tKweF7IBmPHSaqCHdNUQU,1279
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ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report.py,sha256=-lEwoIM-PMlStDv7pOYGEoZ0XA698JVi2ro4Rg0Zzt4,6685
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ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report_biounit_chain.py,sha256=FsbGDbeBRQpDejl--Rv3IXZJsKm_rPawsQEHu8UGXVQ,3270
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ncbi/datasets/openapi/models/v2reports_warning_gene_warning_code.py,sha256=6RDXn2v5GymCsGQMtoFVyp_x6qN_II3GKZRR5zsIEl8,1378
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ncbi/datasets/openapi/models/v2reports_warning_replaced_id.py,sha256=MQh3OXNaIEtRSYq0sp-V3FqfD8qHra0dp-va3xsHG4I,2745
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ncbi/datasets/openapi/models/v2reports_wgs_info.py,sha256=LDWjSZgSVmdUg894kdeBsOCIHWmQUKrA90_4ktnmM2o,2903
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ncbi_datasets_pyclient-18.16.0.dist-info/licenses/LICENSE,sha256=4hywPAiqr3WLJWIV6zs2wK9aCcBUQVRwLJWPi2AegMk,1501
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ncbi_datasets_pyclient-18.16.0.dist-info/METADATA,sha256=AP2LaYOJieATr3Wr82SGkEeVup-mANtfzo1PZ5y4SUU,44885
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ncbi_datasets_pyclient-18.16.0.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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ncbi_datasets_pyclient-18.16.0.dist-info/top_level.txt,sha256=nraz3S7SoUNG6x6jm3du082BqAAEJWm-Jm5TmKNo320,5
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ncbi_datasets_pyclient-18.16.0.dist-info/RECORD,,
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File without changes
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{ncbi_datasets_pyclient-18.14.0.dist-info → ncbi_datasets_pyclient-18.16.0.dist-info}/top_level.txt
RENAMED
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File without changes
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