mxlpy 0.22.0__py3-none-any.whl → 0.24.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mxlpy/__init__.py +13 -6
- mxlpy/carousel.py +52 -5
- mxlpy/compare.py +15 -2
- mxlpy/experimental/diff.py +14 -0
- mxlpy/fit.py +20 -1
- mxlpy/integrators/__init__.py +4 -0
- mxlpy/integrators/int_assimulo.py +3 -3
- mxlpy/integrators/int_diffrax.py +119 -0
- mxlpy/integrators/int_scipy.py +12 -6
- mxlpy/label_map.py +1 -2
- mxlpy/mc.py +85 -24
- mxlpy/mca.py +8 -4
- mxlpy/meta/__init__.py +6 -1
- mxlpy/meta/codegen_latex.py +9 -0
- mxlpy/meta/codegen_model.py +55 -12
- mxlpy/meta/codegen_mxlpy.py +215 -58
- mxlpy/meta/source_tools.py +129 -80
- mxlpy/meta/sympy_tools.py +12 -6
- mxlpy/model.py +314 -96
- mxlpy/plot.py +60 -29
- mxlpy/sbml/_data.py +34 -0
- mxlpy/sbml/_export.py +17 -8
- mxlpy/sbml/_import.py +68 -547
- mxlpy/scan.py +163 -249
- mxlpy/simulator.py +9 -359
- mxlpy/types.py +723 -80
- mxlpy/units.py +5 -0
- {mxlpy-0.22.0.dist-info → mxlpy-0.24.0.dist-info}/METADATA +7 -1
- mxlpy-0.24.0.dist-info/RECORD +57 -0
- mxlpy/sbml/_mathml.py +0 -692
- mxlpy/sbml/_unit_conversion.py +0 -74
- mxlpy-0.22.0.dist-info/RECORD +0 -58
- {mxlpy-0.22.0.dist-info → mxlpy-0.24.0.dist-info}/WHEEL +0 -0
- {mxlpy-0.22.0.dist-info → mxlpy-0.24.0.dist-info}/licenses/LICENSE +0 -0
mxlpy/sbml/_unit_conversion.py
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from __future__ import annotations
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__all__ = ["get_ast_types", "get_operator_mappings", "get_unit_conversion"]
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import libsbml
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unit_conversion = {
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"UNIT_KIND_AMPERE": "AMPERE",
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"UNIT_KIND_AVOGADRO": "AVOGADRO",
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"UNIT_KIND_BECQUEREL": "BECQUEREL",
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"UNIT_KIND_CANDELA": "CANDELA",
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"UNIT_KIND_CELSIUS": "CELSIUS",
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"UNIT_KIND_COULOMB": "COULOMB",
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"UNIT_KIND_DIMENSIONLESS": "DIMENSIONLESS",
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"UNIT_KIND_FARAD": "FARAD",
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"UNIT_KIND_GRAM": "GRAM",
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"UNIT_KIND_GRAY": "GRAY",
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"UNIT_KIND_HENRY": "HENRY",
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"UNIT_KIND_HERTZ": "HERTZ",
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"UNIT_KIND_ITEM": "ITEM",
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"UNIT_KIND_JOULE": "JOULE",
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"UNIT_KIND_KATAL": "KATAL",
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"UNIT_KIND_KELVIN": "KELVIN",
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"UNIT_KIND_KILOGRAM": "KILOGRAM",
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"UNIT_KIND_LITER": "LITER",
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"UNIT_KIND_LITRE": "LITER",
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"UNIT_KIND_LUMEN": "LUMEN",
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"UNIT_KIND_LUX": "LUX",
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"UNIT_KIND_METER": "METER",
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"UNIT_KIND_METRE": "METRE",
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"UNIT_KIND_MOLE": "MOLE",
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"UNIT_KIND_NEWTON": "NEWTON",
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"UNIT_KIND_OHM": "OHM",
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"UNIT_KIND_PASCAL": "PASCAL",
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"UNIT_KIND_RADIAN": "RADIAN",
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"UNIT_KIND_SECOND": "SECOND",
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"UNIT_KIND_SIEMENS": "SIEMENS",
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"UNIT_KIND_SIEVERT": "SIEVERT",
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"UNIT_KIND_STERADIAN": "STERADIAN",
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"UNIT_KIND_TESLA": "TESLA",
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"UNIT_KIND_VOLT": "VOLT",
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"UNIT_KIND_WATT": "WATT",
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"UNIT_KIND_WEBER": "WEBER",
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"UNIT_KIND_INVALID": "INVALID",
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}
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def get_unit_conversion() -> dict[str, str]:
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return {getattr(libsbml, k): v.lower() for k, v in unit_conversion.items()}
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ast_types = dict(
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sorted(
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{getattr(libsbml, i): i for i in dir(libsbml) if i.startswith("AST_")}.items()
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)
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)
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def get_ast_types() -> dict[str, str]:
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return ast_types
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operator_mappings = {
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"AST_TIMES": "*",
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"AST_PLUS": "+",
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"AST_MINUS": "-",
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"AST_DIVIDE": "/",
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"AST_POWER": "**",
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}
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def get_operator_mappings() -> dict[str, str]:
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return operator_mappings
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mxlpy-0.22.0.dist-info/RECORD
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mxlpy/__init__.py,sha256=GlBZ-WmSoMgVIeAyVqtEJiRe_jLar84bjbg_FlAr2vw,4477
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mxlpy/carousel.py,sha256=o72YKzfPCDhT5oHhow4oNvIShG-i3-Z0UMEQLt2iE5A,4699
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mxlpy/compare.py,sha256=PJbb_R9GTGrkcEpGNpUfwZpZbUmZHNjsMQ_5qPAxVNo,7746
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mxlpy/distributions.py,sha256=ce6RTqn19YzMMec-u09fSIUA8A92M6rehCuHuXWcX7A,8734
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mxlpy/fit.py,sha256=3hGUqJ2tOOToZLMMaJw5M9b6_UlUJwT_MhUvfPmRBd8,22355
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mxlpy/fns.py,sha256=NLxYwa3ylS7SkISBjw_TgQSKEm7WnkZF9wPigX_ZCAM,13915
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mxlpy/identify.py,sha256=G-Zyr_l-K2mDtIV1xGrQ52QJxoBYqRoNA5RW6GpbNjs,2213
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mxlpy/label_map.py,sha256=kNzqDVp5X6T4uod-y79d6cItOd7_9jmpojDA1TSPRoE,17872
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mxlpy/linear_label_map.py,sha256=6Ye6IziWGKkYD_5z3FmTVwnJ2T9SvVGN3U4CfXjXseo,10320
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mxlpy/mc.py,sha256=AvvnyNIEvaB9gJyd0RtaFs_uVhZ7Xh2FpljHH04YRkc,17217
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mxlpy/mca.py,sha256=BRNbisYijT2SUT6VdIpIh3Id3VgL3NTtycn0VARDWlE,9375
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mxlpy/model.py,sha256=GD1FGppxDJwvEx4ehcQeOx3qkqr8PxDTQ0TwoixBvKI,71617
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mxlpy/parallel.py,sha256=yLQLw5O4vnPVp_Zmtw1UhPWtB3483foimxQB-TwFKPg,5016
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mxlpy/parameterise.py,sha256=IgbvfEnkmaqVq_5GgFjHqApGUN9CJrsVD3Fr7pg9iFA,758
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mxlpy/paths.py,sha256=TK2wO4N9lG-UV1JGfeB64q48JVDbwqIUj63rl55MKuQ,1022
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mxlpy/plot.py,sha256=PA7tAmy2XXACxBLtdnfpxKUFRzi-lnCQjr7gw_nzxKU,32544
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mxlpy/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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mxlpy/report.py,sha256=v597yzKecgtoNmlNZ_nVhBCa3czNw0tksOK5mLtAQvE,10631
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mxlpy/scan.py,sha256=WARFQgFwOsO2PzC1d2rGDfgDjYV8cYwc196IB2rzrzY,19416
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mxlpy/simulator.py,sha256=so7Dax42EKppeBUTxWWKxYhdAFKS2jAgWzS04fXuFpY,27751
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mxlpy/types.py,sha256=Z697aAiJ3Dp2nvMvdm60Z8rEhQjKKgrYHa1riZpY-QE,12994
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mxlpy/units.py,sha256=WHtP9s90VR8rUpPLsQ_eQeiW3wMPEryMvLpsDfu0tEo,1946
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mxlpy/experimental/__init__.py,sha256=kZTE-92OErpHzNRqmgSQYH4CGXrogGJ5EL35XGZQ81M,206
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mxlpy/experimental/diff.py,sha256=g5hKvFsEUdEk5OGQ_aQuCxLAnenD_jG4G__EcVfKsx4,9104
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mxlpy/integrators/__init__.py,sha256=OLdcNCDIOiD1Z2LO143YtD47cMadNJt0app41nLAx5o,456
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mxlpy/integrators/int_assimulo.py,sha256=8gLR1D4zJ-TnJ9DTkfkqA2uVE0H2w_npZhZ8RoWZOX8,5013
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mxlpy/integrators/int_scipy.py,sha256=82nU6cN4PjPoTEXSK5GuFxG89EnnKBHbjG8A9YDPKnc,4749
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mxlpy/meta/__init__.py,sha256=_Bec5aPJ6YyAkxUXlsQtAy_2VzX0tPGVSj-eGACqrXc,404
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mxlpy/meta/codegen_latex.py,sha256=i4tPvk2-toAYqtf4TynuE9sfUSHUp21AMUgjgFEB0uo,23215
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mxlpy/meta/codegen_model.py,sha256=LT767mzniKgAAtMTbejGcl6YmivNa3J1wZjEsH6iX9M,5067
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mxlpy/meta/codegen_mxlpy.py,sha256=Yx6GtsHUup4bIrEyMw9FYE60Y35xAK81IC-r0EdZDEM,3576
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mxlpy/meta/source_tools.py,sha256=imdNbGfDjmEEI7gLWm3BFUfB1xwhW4Lt6mhKvE0PhLw,20735
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mxlpy/meta/sympy_tools.py,sha256=TJSCFK9yuxwNrUHbZrcayo_g1UQWmiUiw4Z5V_pUye4,2853
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mxlpy/nn/__init__.py,sha256=Qjr-ERsY2lbD75sFBOhCUwEasQDSJKcpBn_kReLZ6oA,633
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mxlpy/nn/_keras.py,sha256=-5zjHRu8OjSiZeuBSIZFyB63uBsNNH5o9y4kBcPnhx8,2263
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mxlpy/nn/_torch.py,sha256=GUJmLU282VU4O-fs3Sz90SEaAnfuXN2MPlBr_tHmvn4,5775
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mxlpy/npe/__init__.py,sha256=hBHCUD2JYDBBGS2kTY8mTCfWB3u1R7m5l--wUupZt6o,1270
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mxlpy/npe/_keras.py,sha256=ytvXMPK9KUCGOzTQm08_SgafiMb-MOIUdZQV7JjAO40,9721
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mxlpy/npe/_torch.py,sha256=v3joh6lFJJxvYJj--wzmKXL9UMTaIN3h6hPNq0uX9NU,11250
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mxlpy/sbml/__init__.py,sha256=Mt97CddpLi3wIrA1b_5cagLmDdNxAVF_S7QV57Pzw8s,226
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mxlpy/sbml/_data.py,sha256=yYli7ZQ1_pnH9kt5EmcuHM0moQoa43rrFVdrseXlG0o,1136
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mxlpy/sbml/_export.py,sha256=DibzxWLsHQeI4rmvhpV0AfbDmud3lIcfcdm5BV51-PE,20538
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mxlpy/sbml/_import.py,sha256=aCxNKEO6qaZRc7XWFwzOLE1PV0hXFstJbD-SkLjef2k,22082
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mxlpy/sbml/_mathml.py,sha256=oaU9q5yb9jvDGxDJrqOkbOiurCB1Vv_P99oUwJ7v1VE,24437
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mxlpy/sbml/_name_conversion.py,sha256=93muW47M7qJoE227HKHmThWpPeWsXDN9eM8cRH2pqPs,1340
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mxlpy/sbml/_unit_conversion.py,sha256=dW_I6_Ou09ccwnp6LIdrPriIQnQUK5lJcjzM2Fawm6U,1927
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mxlpy/surrogates/__init__.py,sha256=cz9qr0ToYSutIK45IvKrMe1mPP7Lj0I_V0HYGixfpZU,916
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mxlpy/surrogates/_keras.py,sha256=r2pR3iTJOaMqtATbsCm5CF94TYG9b-9cKljc8kMOplQ,3852
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mxlpy/surrogates/_poly.py,sha256=z2g3JTdVyQJ8dIiXP4BOun_yMZOrlYpPNvQ0wmFYDTk,3672
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mxlpy/surrogates/_qss.py,sha256=9w-hPPhdcwybkyaSX0sIfYfvcKu1U5j4HHj4SlgZcYQ,723
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mxlpy/surrogates/_torch.py,sha256=gU0secuRBYgewhNqZmSo6_Xf804dSzwWwIYmdKA7y60,6389
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mxlpy/symbolic/__init__.py,sha256=_vM5YM5I6OH0QDbFt9uGYKO8Z5Vly0wbGuvUScVrPRU,258
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mxlpy/symbolic/strikepy.py,sha256=tzo3uvPpXLDex09hWTuitVzuTNwbgl7jWGjD8g6a8iI,20033
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mxlpy/symbolic/symbolic_model.py,sha256=cKfWoktvFmXjuo8egE7gXKrKBq2iBUiy_BcIKIvvz8A,3026
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mxlpy-0.22.0.dist-info/METADATA,sha256=LsEH4wwslk1cTqQzL_JvkHvPlk5zdfnNebzUzPPhHeY,4601
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mxlpy-0.22.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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mxlpy-0.22.0.dist-info/licenses/LICENSE,sha256=lHX9Eu70g3Iv1aOxXTWNHa3vq9vaVYSPQx4jOLYmDpw,1096
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mxlpy-0.22.0.dist-info/RECORD,,
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File without changes
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