multipers 1.0__cp311-cp311-manylinux_2_34_x86_64.whl
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- multipers/__init__.py +4 -0
- multipers/_old_rank_invariant.pyx +328 -0
- multipers/_signed_measure_meta.py +72 -0
- multipers/data/MOL2.py +350 -0
- multipers/data/UCR.py +18 -0
- multipers/data/__init__.py +1 -0
- multipers/data/graphs.py +272 -0
- multipers/data/immuno_regions.py +27 -0
- multipers/data/minimal_presentation_to_st_bf.py +0 -0
- multipers/data/pytorch2simplextree.py +91 -0
- multipers/data/shape3d.py +101 -0
- multipers/data/synthetic.py +68 -0
- multipers/distances.py +100 -0
- multipers/euler_characteristic.cpython-311-x86_64-linux-gnu.so +0 -0
- multipers/euler_characteristic.pyx +132 -0
- multipers/function_rips.cpython-311-x86_64-linux-gnu.so +0 -0
- multipers/function_rips.pyx +101 -0
- multipers/hilbert_function.cpython-311-x86_64-linux-gnu.so +0 -0
- multipers/hilbert_function.pyi +46 -0
- multipers/hilbert_function.pyx +145 -0
- multipers/ml/__init__.py +0 -0
- multipers/ml/accuracies.py +61 -0
- multipers/ml/convolutions.py +384 -0
- multipers/ml/invariants_with_persistable.py +79 -0
- multipers/ml/kernels.py +128 -0
- multipers/ml/mma.py +422 -0
- multipers/ml/one.py +472 -0
- multipers/ml/point_clouds.py +191 -0
- multipers/ml/signed_betti.py +50 -0
- multipers/ml/signed_measures.py +1046 -0
- multipers/ml/sliced_wasserstein.py +313 -0
- multipers/ml/tools.py +99 -0
- multipers/multiparameter_edge_collapse.py +29 -0
- multipers/multiparameter_module_approximation.cpython-311-x86_64-linux-gnu.so +0 -0
- multipers/multiparameter_module_approximation.pxd +147 -0
- multipers/multiparameter_module_approximation.pyi +439 -0
- multipers/multiparameter_module_approximation.pyx +931 -0
- multipers/pickle.py +53 -0
- multipers/plots.py +207 -0
- multipers/point_measure_integration.cpython-311-x86_64-linux-gnu.so +0 -0
- multipers/point_measure_integration.pyx +59 -0
- multipers/rank_invariant.cpython-311-x86_64-linux-gnu.so +0 -0
- multipers/rank_invariant.pyx +154 -0
- multipers/simplex_tree_multi.cpython-311-x86_64-linux-gnu.so +0 -0
- multipers/simplex_tree_multi.pxd +121 -0
- multipers/simplex_tree_multi.pyi +715 -0
- multipers/simplex_tree_multi.pyx +1284 -0
- multipers/tensor.pxd +13 -0
- multipers/test.pyx +44 -0
- multipers-1.0.dist-info/LICENSE +21 -0
- multipers-1.0.dist-info/METADATA +9 -0
- multipers-1.0.dist-info/RECORD +56 -0
- multipers-1.0.dist-info/WHEEL +5 -0
- multipers-1.0.dist-info/top_level.txt +1 -0
- multipers.libs/libtbb-5d1cde94.so.12.10 +0 -0
- multipers.libs/libtbbmalloc-5e0a3d4c.so.2.10 +0 -0
multipers/tensor.pxd
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from libc.stdint cimport uint16_t
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from libcpp.vector cimport vector
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from libcpp cimport bool, float
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ctypedef float dtype
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ctypedef uint16_t index_type
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cdef extern from "tensor/tensor.h" namespace "tensor":
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cdef cppclass static_tensor_view[float, uint16_t]:
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static_tensor_view() except + nogil
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static_tensor_view(dtype*,const vector[index_type]&) except + nogil
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const vector[index_type]& get_resolution()
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multipers/test.pyx
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# cimport multipers.tensor as mt
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from libc.stdint cimport intptr_t, uint16_t
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from libcpp.vector cimport vector
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from libcpp cimport bool, int, float
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from libcpp.utility cimport pair
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from typing import Optional,Iterable,Callable
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ctypedef float value_type
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# ctypedef uint16_t index_type
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import numpy as np
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# cimport numpy as cnp
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# cnp.import_array()
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# cdef extern from "multi_parameter_rank_invariant/rank_invariant.h" namespace "Gudhi::rank_invariant":
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# void get_hilbert_surface(const intptr_t, mt.static_tensor_view, const vector[index_type], const vector[index_type], index_type, index_type, const vector[index_type], bool, bool) except + nogil
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from multipers.simplex_tree_multi import SimplexTreeMulti
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def numpy_to_tensor(array:np.ndarray):
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cdef vector[index_type] shape = array.shape
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cdef dtype[::1] contigus_array_view = np.ascontiguousarray(array)
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cdef dtype* dtype_ptr = &contigus_array_view[0]
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cdef mt.static_tensor_view tensor
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with nogil:
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tensor = mt.static_tensor_view(dtype_ptr, shape)
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return tensor.get_resolution()
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# def hilbert2d(simplextree:SimplexTreeMulti, grid_shape:np.ndarray|list, vector[index_type] degrees, bool mobius_inversion):
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# # assert simplextree.num_parameters == 2
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# cdef intptr_t ptr = simplextree.thisptr
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# cdef vector[index_type] c_grid_shape = grid_shape
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# cdef dtype[::1] container = np.zeros(grid_shape, dtype=np.float32).flatten()
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# cdef dtype* container_ptr = &container[0]
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# cdef mt.static_tensor_view c_container = mt.static_tensor_view(container_ptr, c_grid_shape)
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# cdef index_type i = 0
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# cdef index_type j = 1
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# cdef vector[index_type] fixed_values = [[],[]]
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# # get_hilbert_surface(ptr, c_container, c_grid_shape, degrees,i,j,fixed_values, False, False)
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# return container.reshape(grid_shape)
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MIT License
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Copyright (c) 2023 David Loiseaux
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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multipers-1.0.dist-info/WHEEL,sha256=bpvAS43Tmrk7b0RUtWMWkQATv2LFkCoE7-S71PdcCl0,114
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multipers-1.0.dist-info/LICENSE,sha256=UsQRnvlo_9wpQS9DNt52GEraERHwK2GIRwuqr2Yv5JI,1071
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multipers-1.0.dist-info/RECORD,,
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multipers-1.0.dist-info/top_level.txt,sha256=L9e0AGmhRzrNw9FpuUx-zlqi5NcBOmrI9wYY8kYWr8A,10
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multipers-1.0.dist-info/METADATA,sha256=rUDEZNuM59stFumELkzt89m7jc4nOyfsIcjV2WQeJnU,203
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multipers/_signed_measure_meta.py,sha256=MD9pQ91J_cfldKoZTMncy3C0VDB6ZfTP4Xt6ek7tZqI,3510
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multipers/simplex_tree_multi.cpython-311-x86_64-linux-gnu.so,sha256=exgP8cU1pmz2JjRzy3A9J-xSSgkFB6sTOqVYTIbySp4,1219480
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multipers/function_rips.cpython-311-x86_64-linux-gnu.so,sha256=k7hYba3ep46J7cZMnTPjcdVwfvIpVNrz8AJZgyitJ5w,646624
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multipers/euler_characteristic.cpython-311-x86_64-linux-gnu.so,sha256=UC4gBK2TksKTNhaftH75gJ99iRMC24kU3scApy_-q5U,381888
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multipers/multiparameter_module_approximation.pxd,sha256=EMaORruOyeiSaEkyP2LZmfVfGMqfsp4uaCpERrPKOC4,7507
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multipers/tensor.pxd,sha256=MSmaMU0sOP9CHLmg4dym7nOGaI1S4cOdM01TQ9flI54,417
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multipers/hilbert_function.cpython-311-x86_64-linux-gnu.so,sha256=iWB3YYS3yfYpG2QiqOGJxPa0wdoYcXj2cXOVSCpLyRs,684352
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multipers/plots.py,sha256=Jv153BtWKK265-I09pDLSBeiJjxqS5ensyqasYW4bI8,7235
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multipers/rank_invariant.pyx,sha256=ORB-ila7Bk5arE6vbbMYytFzfhJ2Wb2vGYSYTyVHOlQ,7350
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multipers/point_measure_integration.pyx,sha256=RfN4O2GjxlwDXltqZTAoVSg31Q9cLCqK2XGNToOngnc,1919
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multipers/euler_characteristic.pyx,sha256=WTz4Ynl_6HPMkO12bmA88souFf2k3cwDMkZ6QXyxEWQ,5851
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multipers/pickle.py,sha256=9XAh65HQo_MD663OLbP5-DEG6WNU4zyEJePybDu7Hww,2141
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multipers/multiparameter_module_approximation.pyx,sha256=FVbT5GzJz-vpddXo81S9w_nFfgrbIrYTHZuvvAlCJqk,32051
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multipers/simplex_tree_multi.pyx,sha256=0YAtuKozsQjcLWThrbrm9gSG6S6MVUiecUNfECHYvtk,52831
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multipers/multiparameter_edge_collapse.py,sha256=t9w87UPSGxp6Gxgg7C8R7goVK7zKcQf_uThrSYhnbV0,941
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multipers/distances.py,sha256=ws8DSHlBIGTlspRuKMQmVMwJwmrjNey3gdK3e4cyLbE,4551
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multipers/_old_rank_invariant.pyx,sha256=i4olUQ1SMXhvu93pQ9Mrp9hKt0fuK2warsIphavRrZk,13288
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multipers/point_measure_integration.cpython-311-x86_64-linux-gnu.so,sha256=Cvs_NuHGOynsw4fBYLfurmqhOROn7vDRURgkRM3y_hk,431296
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multipers/hilbert_function.pyx,sha256=5KIJd9nAzXqeOYmwMV6bsQkav3A9K5GXbUslDO8jxlE,7119
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multipers/multiparameter_module_approximation.cpython-311-x86_64-linux-gnu.so,sha256=MfxMagIiWi2D45c3_b7FBk3T8Xv5wikJnHZ7xo3hTc0,944416
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multipers/hilbert_function.pyi,sha256=Od6PAT53p6ni8-WwRBPhmTz4rR-WhaT45vjGfxyrJrs,1876
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multipers/__init__.py,sha256=0BL1R3AfhtoMMDWTlVRbTkc06oTzeqxKKGlroNIujSY,236
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multipers/function_rips.pyx,sha256=DMKZa2i4Kq-fZ_jUnaPQWZwgMBgw82thbIxXzCcWwjo,4925
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multipers/multiparameter_module_approximation.pyi,sha256=m54hpq-QMcO7PRLhzrG4se77FInzDQ16e3P8N68i3wc,11265
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multipers/simplex_tree_multi.pyi,sha256=2HbiG_Dwgf965gR__C94uUnNgieM5X5fPfbWjbkNkJ4,26162
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multipers/rank_invariant.cpython-311-x86_64-linux-gnu.so,sha256=uti4bCQYIRtLvQYrF0O_-Qy1ZuctGR5IZOIEaF1CVJs,636464
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multipers/simplex_tree_multi.pxd,sha256=R7OEwYfhYika1MnZg5CuZNB2xOjoyhRdv8TAdbakBeE,6483
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multipers/test.pyx,sha256=-g7WU-jKrZK8H0c-6eAPsfrApjvTKrUoswVYFu8LoV4,1798
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multipers/ml/signed_betti.py,sha256=0Gl8nYJv-zN6FTE_JaiARbA-ySzppRDYjFqlnjndpJg,2213
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multipers/ml/kernels.py,sha256=adnL1Yu-5qO32Je1NFLGEHS0e4EY9OAOnckLUc0dpII,4948
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multipers/ml/point_clouds.py,sha256=whln5c0XRoqZziRwMjXPxTYvFxVFWPHbdUFGcKPv5eo,7304
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multipers/ml/tools.py,sha256=PffzOxg-GI8_KtbTkZhhzizpajBOR3f-lASJTNc2QJk,3025
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multipers/ml/mma.py,sha256=mbETopv643xRO1-2OWFDv0Gh0mJSNZ6jHXCkDoN1b64,16250
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multipers/ml/one.py,sha256=np5jM8gywm65TsK1yeZ1BDWqP-Ym-7hz4brTXI_0imk,20119
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multipers/ml/convolutions.py,sha256=NT6G5IFgnADMwlwRicPYxENKuYZGCpsjqHrW-cWxn0A,14175
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multipers/ml/sliced_wasserstein.py,sha256=4eIMxaPgM0oqZ3H8LcaXvLfnOXgqwWiLnYyjcl4aScU,17079
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multipers/ml/invariants_with_persistable.py,sha256=HL0_IIrcJdAmCIqcyHPg0PNLle_pa2esnGQJsK2hnHc,2261
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multipers/ml/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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multipers/ml/signed_measures.py,sha256=6p86w6go0WAkMWPZ-ux4sQeCMHdeHyvHXhmNfz9NJDY,44857
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multipers/ml/accuracies.py,sha256=sPTNmrZ8vpBcWG62d4Jz6U9qunfExnbQUMDDQsLukwI,2331
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multipers/data/graphs.py,sha256=0z-D0FnC3OI15aZc-5Q9w4i3DPtIsyNmtEFGhUAVUEM,11117
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multipers/data/MOL2.py,sha256=Deu94qPDQFMf_qNwwtn5zYSYO2KmVBufQfUjq3NDkrI,12988
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multipers/data/synthetic.py,sha256=mXBH_xG9ljGepPvgRMCFGL28pm-C52QiU0s3_9zRNBc,2017
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multipers/data/UCR.py,sha256=PuT8l3i26y0goBzIESwdgJAe6YFCyDiWSoxECcP5rhs,798
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multipers/data/immuno_regions.py,sha256=BNN81DOwdu6sJTkaSeziAYyx0jd0kuZZB5Se0Fo95vA,903
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multipers/data/__init__.py,sha256=w7uUe4LOHbdbKU4R8MNs7em65wZJN0v5ukoG1otFanQ,24
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multipers/data/pytorch2simplextree.py,sha256=cvOJTUleK_qEbcpygRD77GuQl_0qDsSjjD6e6UFUDD0,3048
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multipers/data/minimal_presentation_to_st_bf.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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multipers/data/shape3d.py,sha256=AE-vvjKrhKxOwMo-lurUsFqqLjIg5obo-RTbRZF_5Mk,3893
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multipers.libs/libtbbmalloc-5e0a3d4c.so.2.10,sha256=BxFSVeEOqP1GmMZm_Zv0iBRtx-0H8kEUbRc3nK6Yt8g,199088
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multipers.libs/libtbb-5d1cde94.so.12.10,sha256=MParNxhS9PL7FVDacfVZBzyZkK61pFW4RZSAjnSD0MM,362200
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multipers
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