mosamatic2 2.0.24__py3-none-any.whl

mosamatic2/ui/widgets/panels/visualizations/slicevisualization/slicevisualization.py

@@ -0,0 +1,141 @@
+from PySide6.QtWidgets import (
+    QLineEdit,
+    QLabel,
+    QSpinBox,
+    QHBoxLayout,
+    QVBoxLayout,
+    QFormLayout,
+    QPushButton,
+    QFileDialog,
+)
+from mosamatic2.ui.widgets.panels.visualizations.visualization import Visualization
+from mosamatic2.ui.widgets.panels.visualizations.slicevisualization.sliceviewer import SliceViewer
+from mosamatic2.core.managers.logmanager import LogManager
+from mosamatic2.ui.settings import Settings
+from mosamatic2.ui.utils import is_macos
+
+LOG = LogManager()
+PANEL_TITLE = 'SliceVisualization'
+PANEL_NAME = 'slicevisualization'
+
+
+class SliceVisualization(Visualization):
+    def __init__(self):
+        super(SliceVisualization, self).__init__()
+        self.set_title(PANEL_TITLE)
+        self._image_line_edit = None
+        self._image_select_button = None
+        self._image_dir_select_button = None
+        self._color_window_spinbox = None
+        self._color_level_spinbox = None
+        self._color_window_and_level_reset_button = None
+        self._load_image_button = None
+        self._slice_viewer = None
+        self._form_layout = None
+        self._settings = None
+        self.init_layout()
+
+    def image_line_edit(self):
+        if not self._image_line_edit:
+            self._image_line_edit = QLineEdit(self.settings().get(f'{PANEL_NAME}/image'))
+        return self._image_line_edit
+    
+    def image_select_button(self):
+        if not self._image_select_button:
+            self._image_select_button = QPushButton('Select file')
+            self._image_select_button.clicked.connect(self.handle_image_select_button)
+        return self._image_select_button
+    
+    def image_dir_select_button(self):
+        if not self._image_dir_select_button:
+            self._image_dir_select_button = QPushButton('Select directory')
+            self._image_dir_select_button.clicked.connect(self.handle_image_dir_select_button)
+        return self._image_dir_select_button
+    
+    def color_window_spinbox(self):
+        if not self._color_window_spinbox:
+            self._color_window_spinbox = QSpinBox(self, minimum=0, maximum=1024, value=400)
+        return self._color_window_spinbox
+    
+    def color_level_spinbox(self):
+        if not self._color_level_spinbox:
+            self._color_level_spinbox = QSpinBox(self, minimum=0, maximum=100, value=40)
+        return self._color_level_spinbox
+    
+    def color_window_and_level_reset_button(self):
+        if not self._color_window_and_level_reset_button:
+            self._color_window_and_level_reset_button = QPushButton('Reset')
+            self._color_window_and_level_reset_button.clicked.connect(self.handle_color_window_and_level_reset_button)
+        return self._color_window_and_level_reset_button
+    
+    def load_image_button(self):
+        if not self._load_image_button:
+            self._load_image_button = QPushButton('Load')
+            self._load_image_button.clicked.connect(self.handle_load_image_button)
+        return self._load_image_button
+    
+    def slice_viewer(self):
+        if not self._slice_viewer:
+            self._slice_viewer = SliceViewer(
+                color_window=self.color_window_spinbox().value(),
+                color_level=self.color_level_spinbox().value(),
+            )
+        return self._slice_viewer
+
+    def form_layout(self):
+        if not self._form_layout:
+            self._form_layout = QFormLayout()
+            if is_macos():
+                self._form_layout.setFieldGrowthPolicy(QFormLayout.ExpandingFieldsGrow)
+        return self._form_layout
+
+    def settings(self):
+        if not self._settings:
+            self._settings = Settings()
+        return self._settings
+
+    def init_layout(self):
+        image_layout = QHBoxLayout()
+        image_layout.addWidget(self.image_line_edit())
+        image_layout.addWidget(self.image_select_button())
+        image_layout.addWidget(self.image_dir_select_button())
+        color_window_and_level_layout = QHBoxLayout()
+        color_window_and_level_layout.addWidget(QLabel('Color window'))
+        color_window_and_level_layout.addWidget(self.color_window_spinbox())
+        color_window_and_level_layout.addWidget(QLabel('Color level'))
+        color_window_and_level_layout.addWidget(self.color_level_spinbox())
+        color_window_and_level_layout.addWidget(self.color_window_and_level_reset_button())
+        self.form_layout().addRow('NIFTI file or DICOM directory', image_layout)
+        self.form_layout().addRow('', color_window_and_level_layout)
+        layout = QVBoxLayout()
+        layout.addLayout(self.form_layout())
+        layout.addWidget(self.load_image_button())
+        layout.addWidget(self.slice_viewer())
+        self.setLayout(layout)
+        self.setObjectName(PANEL_NAME)
+
+    def handle_image_select_button(self):
+        last_directory = self.settings().get('last_directory')
+        file_path, _ = QFileDialog.getOpenFileName(dir=last_directory)
+        if file_path:
+            self.image_line_edit().setText(file_path)
+            self.settings().set('last_directory', file_path)
+
+    def handle_image_dir_select_button(self):
+        last_directory = self.settings().get('last_directory')
+        dir_path = QFileDialog.getExistingDirectory(dir=last_directory)
+        if dir_path:
+            self.image_line_edit().setText(dir_path)
+            self.settings().set('last_directory', dir_path)
+
+    def handle_color_window_and_level_reset_button(self):
+        self.slice_viewer().set_color_window(self.color_window_spinbox().value())
+        self.slice_viewer().set_color_level(self.color_level_spinbox().value())
+
+    def handle_load_image_button(self):
+        self.slice_viewer().set_nifti_file_or_dicom_dir(self.image_line_edit().text())
+        # self.slice_viewer().set_view_orientation('axial')
+        self.slice_viewer().load_image()
+
+    def save_inputs_and_parameters(self):
+        self.settings().set(f'{PANEL_NAME}/image', self.image_line_edit().text())

mosamatic2/ui/widgets/panels/visualizations/visualization.py

@@ -0,0 +1,6 @@
+from mosamatic2.ui.widgets.panels.defaultpanel import DefaultPanel
+
+
+class Visualization(DefaultPanel):
+    def __init__(self):
+        super(Visualization, self).__init__()

mosamatic2/ui/widgets/splashscreen.py

@@ -0,0 +1,101 @@
+import os
+import mosamatic2.constants as constants
+from PySide6.QtWidgets import (
+    QWidget,
+    QVBoxLayout,
+    QPushButton,
+    QLabel,
+)
+from PySide6.QtCore import Qt
+from PySide6.QtGui import QPixmap
+from mosamatic2.ui.mainwindow import MainWindow
+from mosamatic2.ui.utils import resource_path, set_opacity, version
+
+
+class SplashScreen(QWidget):
+    def __init__(self):
+        super(SplashScreen, self).__init__()
+        self._main = None
+        self._background_label = None
+        self._background_pixmap = None
+        self._title_label = None
+        self._sub_text_label = None
+        self._start_app_button = None
+        self._donate_button = None
+        self._close_button = None
+        self.init_layout()
+
+    def main(self):
+        if not self._main:
+            self._main = MainWindow()
+        return self._main
+    
+    def background_label(self):
+        if not self._background_label:
+            self._background_label = QLabel(self)
+            self._background_label.setPixmap(self.background_pixmap())
+            self._background_label.setGeometry(0, 0, self.width(), self.height())
+            self._background_label.lower()
+        return self._background_label
+    
+    def background_pixmap(self):
+        if not self._background_pixmap:
+            self._background_pixmap = QPixmap(resource_path(os.path.join(
+                constants.MOSAMATIC2_IMAGES_DIR_PATH, constants.MOSAMATIC2_BACKGROUND_IMAGE_FILE_NAME,
+            ))).scaled(self.size(), Qt.IgnoreAspectRatio, Qt.SmoothTransformation)
+            self._background_pixmap = set_opacity(self._background_pixmap, constants.MOSAMATIC2_BACKGROUND_IMAGE_OPACITY)
+        return self._background_pixmap
+    
+    def title_label(self):
+        if not self._title_label:
+            self._title_label = QLabel(f'{constants.MOSAMATIC2_SPLASH_SCREEN_TITLE} {version()}')
+            self._title_label.setStyleSheet(constants.MOSAMATIC2_SPLASH_SCREEN_TITLE_STYLESHEET)
+            self._title_label.setAlignment(Qt.AlignCenter)
+        return self._title_label
+    
+    def sub_text_label(self):
+        if not self._sub_text_label:
+            message = constants.MOSAMATIC2_SPLASH_SCREEN_SUB_TEXT
+            self._sub_text_label = QLabel(message)
+            self._sub_text_label.setStyleSheet(constants.MOSAMATIC2_SPLASH_SCREEN_SUB_TEXT_STYLE_SHEET)
+            self._sub_text_label.setAlignment(Qt.AlignCenter)
+        return self._sub_text_label
+    
+    def start_app_button(self):
+        if not self._start_app_button:
+            self._start_app_button = QPushButton(constants.MOSAMATIC2_SPLASH_SCREEN_START_BUTTON_TEXT)
+            self._start_app_button.clicked.connect(self.handle_start_app_button)
+        return self._start_app_button
+    
+    def close_button(self):
+        if not self._close_button:
+            self._close_button = QPushButton(constants.MOSAMATIC2_SPLASH_SCREEN_QUIT_BUTTON_TEXT)
+            self._close_button.clicked.connect(self.handle_close_button)
+        return self._close_button
+    
+    # LAYOUT
+
+    def init_layout(self):
+        layout = QVBoxLayout()
+        layout.addWidget(self.title_label())
+        layout.addWidget(self.sub_text_label())
+        layout.addWidget(self.start_app_button())
+        layout.addWidget(self.close_button())
+        self.setLayout(layout)
+        self.setFixedSize(constants.MOSAMATIC2_SPLASH_SCREEN_W, constants.MOSAMATIC2_SPLASH_SCREEN_H)
+        self.setWindowFlags(Qt.FramelessWindowHint)
+    
+    # EVENT HANDLERS
+
+    def handle_start_app_button(self):
+        self.close()
+        self.main().show()
+
+    def handle_close_button(self):
+        self.close()
+
+    def resizeEvent(self, event):
+        super().resizeEvent(event)
+        scaled = self.background_pixmap().scaled(self.size(), Qt.KeepAspectRatioByExpanding, Qt.SmoothTransformation)
+        self.background_label().setPixmap(scaled)
+        self.background_label().setGeometry(0, 0, self.width(), self.height())

mosamatic2/ui/worker.py

@@ -0,0 +1,29 @@
+import traceback
+from PySide6.QtCore import (
+    QObject, 
+    Signal, 
+)
+from mosamatic2.core.managers.logmanager import LogManager
+
+LOG = LogManager()
+
+
+class Worker(QObject):
+    progress = Signal(int)
+    status = Signal(str)
+    finished = Signal()
+
+    def __init__(self, task):
+        super(Worker, self).__init__()
+        self._task = task
+
+    def run(self):
+        try:
+            self.status.emit('started')
+            self._task.run()
+            self.status.emit('done')
+            self.finished.emit()
+        except Exception as e:
+            self.status.emit('failed')
+            LOG.error(traceback.format_exc())
+            self.finished.emit()

mosamatic2-2.0.24.dist-info/METADATA

@@ -0,0 +1,43 @@
+Metadata-Version: 2.3
+Name: mosamatic2
+Version: 2.0.24
+Summary: 
+Author: Ralph Brecheisen
+Author-email: r.brecheisen@maastrichtuniversity.nl
+Requires-Python: >=3.11,<3.12
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Requires-Dist: antspyx (>=0.5.4)
+Requires-Dist: dicom2nifti (>=2.6.2)
+Requires-Dist: docker (>=7.1.0)
+Requires-Dist: flask (>=3.1.2)
+Requires-Dist: moosez (>=3.0.29)
+Requires-Dist: nibabel (>=5.3.2)
+Requires-Dist: numpy (>=1.26.4)
+Requires-Dist: openpyxl (>=3.1.5)
+Requires-Dist: pandas (>=2.3.2)
+Requires-Dist: pendulum (>=3.1.0)
+Requires-Dist: pillow (>=11.3.0)
+Requires-Dist: pydicom (>=3.0.1)
+Requires-Dist: pyqtgraph (>=0.13.7)
+Requires-Dist: pyside6-essentials (>=6.9)
+Requires-Dist: python-gdcm (>=3.0.26)
+Requires-Dist: scipy (>=1.15.3)
+Requires-Dist: simpleitk (>=2.5.2)
+Requires-Dist: slicer (>=0.0.8)
+Requires-Dist: tensorboard (==2.15.2)
+Requires-Dist: tensorboard-data-server (==0.7.2)
+Requires-Dist: tensorflow (==2.15.*) ; platform_system == "Linux"
+Requires-Dist: tensorflow-intel (==2.15.0) ; platform_system == "Windows"
+Requires-Dist: tensorflow-io-gcs-filesystem (==0.31.0) ; platform_system == "Windows"
+Requires-Dist: tensorflow-io-gcs-filesystem (>=0.31.0) ; platform_system == "Darwin" and platform_machine == "arm64"
+Requires-Dist: tensorflow-macos (==2.15.0) ; platform_system == "Darwin" and platform_machine == "arm64"
+Requires-Dist: torch (==2.5.1)
+Requires-Dist: torchsummary
+Requires-Dist: torchvision (>=0.20.1)
+Requires-Dist: totalsegmentator (>=2.11.0)
+Requires-Dist: vtk (>=9.5.1)
+Requires-Dist: webdavclient3 (>=3.14.6)
+Description-Content-Type: text/markdown
+
+

mosamatic2-2.0.24.dist-info/RECORD

@@ -0,0 +1,136 @@
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