monai-weekly 1.5.dev2519__py3-none-any.whl → 1.5.dev2520__py3-none-any.whl

monai/__init__.py

@@ -136,4 +136,4 @@ except BaseException:
 
     if MONAIEnvVars.debug():
         raise
-__commit_id__ = "f97a0e9bc7787df261284db2cdeffa2e8d631512"
+__commit_id__ = "707b23054025a26271e6ace9e9477801a71d8e0a"

monai/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-05-11T02:34:08+0000",
+ "date": "2025-05-18T02:35:03+0000",
  "dirty": false,
  "error": null,
- "full-revisionid": "552815d9e48a40cf72c7c718034df7984f5d14dd",
- "version": "1.5.dev2519"
+ "full-revisionid": "cc43efa2f524c91686c29a51b04e31e47206dec8",
+ "version": "1.5.dev2520"
 }
 '''  # END VERSION_JSON
 

monai/bundle/scripts.py

@@ -702,8 +702,6 @@ def load(
         3. If `load_ts_module` is `True`, return a triple that include a TorchScript module,
             the corresponding metadata dict, and extra files dict.
             please check `monai.data.load_net_with_metadata` for more details.
-        4. If `return_state_dict` is True, return model weights, only used for compatibility
-            when `model` and `net_name` are all `None`.
 
     """
     bundle_dir_ = _process_bundle_dir(bundle_dir)

monai/networks/nets/autoencoderkl.py

@@ -153,9 +153,9 @@ class Encoder(nn.Module):
         channels: sequence of block output channels.
         out_channels: number of channels in the bottom layer (latent space) of the autoencoder.
         num_res_blocks: number of residual blocks (see _ResBlock) per level.
-        norm_num_groups: number of groups for the GroupNorm layers, num_channels must be divisible by this number.
+        norm_num_groups: number of groups for the GroupNorm layers, channels must be divisible by this number.
         norm_eps: epsilon for the normalization.
-        attention_levels: indicate which level from num_channels contain an attention block.
+        attention_levels: indicate which level from channels contain an attention block.
         with_nonlocal_attn: if True use non-local attention block.
         include_fc: whether to include the final linear layer. Default to True.
         use_combined_linear: whether to use a single linear layer for qkv projection, default to False.
@@ -299,9 +299,9 @@ class Decoder(nn.Module):
         in_channels: number of channels in the bottom layer (latent space) of the autoencoder.
         out_channels: number of output channels.
         num_res_blocks: number of residual blocks (see _ResBlock) per level.
-        norm_num_groups: number of groups for the GroupNorm layers, num_channels must be divisible by this number.
+        norm_num_groups: number of groups for the GroupNorm layers, channels must be divisible by this number.
         norm_eps: epsilon for the normalization.
-        attention_levels: indicate which level from num_channels contain an attention block.
+        attention_levels: indicate which level from channels contain an attention block.
         with_nonlocal_attn: if True use non-local attention block.
         use_convtranspose: if True, use ConvTranspose to upsample feature maps in decoder.
         include_fc: whether to include the final linear layer. Default to True.
@@ -483,7 +483,7 @@ class AutoencoderKL(nn.Module):
         channels: number of output channels for each block.
         attention_levels: sequence of levels to add attention.
         latent_channels: latent embedding dimension.
-        norm_num_groups: number of groups for the GroupNorm layers, num_channels must be divisible by this number.
+        norm_num_groups: number of groups for the GroupNorm layers, channels must be divisible by this number.
         norm_eps: epsilon for the normalization.
         with_encoder_nonlocal_attn: if True use non-local attention block in the encoder.
         with_decoder_nonlocal_attn: if True use non-local attention block in the decoder.
@@ -518,10 +518,10 @@ class AutoencoderKL(nn.Module):
 
         # All number of channels should be multiple of num_groups
         if any((out_channel % norm_num_groups) != 0 for out_channel in channels):
-            raise ValueError("AutoencoderKL expects all num_channels being multiple of norm_num_groups")
+            raise ValueError("AutoencoderKL expects all channels being multiple of norm_num_groups")
 
         if len(channels) != len(attention_levels):
-            raise ValueError("AutoencoderKL expects num_channels being same size of attention_levels")
+            raise ValueError("AutoencoderKL expects channels being same size of attention_levels")
 
         if isinstance(num_res_blocks, int):
             num_res_blocks = ensure_tuple_rep(num_res_blocks, len(channels))
@@ -529,7 +529,7 @@ class AutoencoderKL(nn.Module):
         if len(num_res_blocks) != len(channels):
             raise ValueError(
                 "`num_res_blocks` should be a single integer or a tuple of integers with the same length as "
-                "`num_channels`."
+                "`channels`."
             )
 
         self.encoder: nn.Module = Encoder(

monai/visualize/occlusion_sensitivity.py

@@ -80,7 +80,7 @@ class OcclusionSensitivity:
         n_batch: int = 16,
         verbose: bool = True,
         mode: str | float | Callable = "gaussian",
-        overlap: float = 0.25,
+        overlap: float = 0.6,
         activate: bool | Callable = True,
     ) -> None:
         """

{monai_weekly-1.5.dev2519.dist-info → monai_weekly-1.5.dev2520.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: monai-weekly
-Version: 1.5.dev2519
+Version: 1.5.dev2520
 Summary: AI Toolkit for Healthcare Imaging
 Home-page: https://monai.io/
 Author: MONAI Consortium

{monai_weekly-1.5.dev2519.dist-info → monai_weekly-1.5.dev2520.dist-info}/RECORD

@@ -1,5 +1,5 @@
-monai/__init__.py,sha256=6Lqce9ju_1prrRexTvxrqDOAXR4V_2jIexYWftm4WI0,4095
-monai/_version.py,sha256=MEanOs38grhINGP6ufrVEYiEk-QFqmAz6U2O5UwqGRg,503
+monai/__init__.py,sha256=kZDFttD2rvFD_euw09ICobt_wX4jw1k0qDTs3kCJyDE,4095
+monai/_version.py,sha256=sWFMjgtn66w242ewwqrmMrt1OTynXCSfg5N75J91qqc,503
 monai/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 monai/_extensions/__init__.py,sha256=NEBPreRhQ8H9gVvgrLr_y52_TmqB96u_u4VQmeNT93I,642
 monai/_extensions/loader.py,sha256=7SiKw36q-nOzH8CRbBurFrz7GM40GCu7rc93Tm8XpnI,3643
@@ -115,7 +115,7 @@ monai/bundle/config_item.py,sha256=rMjXSGkjJZdi04BwSHwCcIwzIb_TflmC3xDhC3SVJRs,1
 monai/bundle/config_parser.py,sha256=cGyEn-cqNk0rEEZ1Qiv6UydmIDvtWZcMVljyfVm5i50,23025
 monai/bundle/properties.py,sha256=iN3K4FVmN9ny1Hw9p5j7_ULcCdSD8PmrR7qXxbNz49k,11582
 monai/bundle/reference_resolver.py,sha256=GXCMK4iogxxE6VocsmAbUrcXosmC5arnjeG9zYhHKpg,16748
-monai/bundle/scripts.py,sha256=G6otT4PLWeWJ0P1Nk8-IwdYejMNakWiC3mFZ6qoNEfc,89709
+monai/bundle/scripts.py,sha256=ZFNlQf2R2XOyRnZciuxsYlx_-GKmVQvnnOGKbL16OPM,89560
 monai/bundle/utils.py,sha256=t-22uFvLn7Yy-dr1v1U33peNOxgAmU4TJiGAbsBrUKs,10108
 monai/bundle/workflows.py,sha256=6OUyC0a_hsG5yGe-uVvFNeHzjf4W86NHu-XNGuNkdZo,33179
 monai/config/__init__.py,sha256=CN28CfTdsp301gv8YXfVvkbztCfbAqrLKrJi_C8oP9s,1048
@@ -298,7 +298,7 @@ monai/networks/nets/__init__.py,sha256=QS_r_mjmymo3YX6DnWftREug1zVRUV56b2xjj5rvW
 monai/networks/nets/ahnet.py,sha256=RT-loCa5Z_3I2DWB8lmRkhxGXSsnMVBCEDpwo68-YB4,21570
 monai/networks/nets/attentionunet.py,sha256=lqsrzpy0sRuuFjAtKUUJ0hT3lGF9skpepWXLG0JBo-k,9427
 monai/networks/nets/autoencoder.py,sha256=QuLdDfDwhefIqA2n8XfmFyi5T8enP6O4PETdBKmFMKc,12586
-monai/networks/nets/autoencoderkl.py,sha256=TowI-ayLEvrOiBjGZeQ0MbXrxFnLEKj5FBqTB55ggVE,28598
+monai/networks/nets/autoencoderkl.py,sha256=FWOMTdbRNPeJVxgEF6Kq5lbiazrTwSzSw_jpghF-lqg,28566
 monai/networks/nets/basic_unet.py,sha256=K76Q-WXuCPGNf8X9qa1wwtiv1gzwlERrL6BKqKcpzlQ,10951
 monai/networks/nets/basic_unetplusplus.py,sha256=M2sSCgWvqgpiRq1tpR164udnbN1WkO1a81PmgCfV5lU,7961
 monai/networks/nets/cell_sam_wrapper.py,sha256=88bzdzzw_1_wncYdxt2EAtUN7c0EPdzNaLp1lW1I__s,3326
@@ -423,10 +423,10 @@ monai/visualize/__init__.py,sha256=p7dv9-hRa9vAhlpHyk86yap9HgeDeJRO3pXmFhDx8Mc,1
 monai/visualize/class_activation_maps.py,sha256=w4BpnriGPBtspqjICrwakvxeWkhK2E05fTbqfzlmPFE,16122
 monai/visualize/gradient_based.py,sha256=oXqMxqIClVlrgloZwgdTUl4pWllsoS0ysbjuvAbu-Kg,6278
 monai/visualize/img2tensorboard.py,sha256=n4ztSa5BQAUxSTGvi2tp45v-F7-RNgSlbsdy-9YGL78,9228
-monai/visualize/occlusion_sensitivity.py,sha256=OQHEJLyIhB8zWqQsfKaX-1kvCjWFVYtLfS4dFC0nKFI,18160
+monai/visualize/occlusion_sensitivity.py,sha256=0SwhLO7ePDfIXJj67_UmXDZLxXItMeM-uNrPaCE0xXg,18159
 monai/visualize/utils.py,sha256=B-MhTVs7sQbIqYS3yPnpBwPw2K82rE2PBtGIfpwZtWM,9894
 monai/visualize/visualizer.py,sha256=qckyaMZCbezYUwE20k5yc-Pb7UozVavMDbrmyQwfYHY,1377
-monai_weekly-1.5.dev2519.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+monai_weekly-1.5.dev2520.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
 tests/apps/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
 tests/apps/test_auto3dseg_bundlegen.py,sha256=FpTJo9Lfe8vdhGuWeZ9y1BQmqYwTt-s8mDVtoLGAz_I,5594
 tests/apps/test_check_hash.py,sha256=MuZslW2DDCxHKEo6-PiL7hnbxGuZRRYf6HOh3ZQv1qQ,1761
@@ -508,7 +508,7 @@ tests/apps/vista3d/test_vista3d_sampler.py,sha256=-luQCe3Hhle2PC9AkFCUgK8gozOD0O
 tests/apps/vista3d/test_vista3d_transforms.py,sha256=nAPiDBNWeXLoW7ax3HHL63t5jqzQ3HFa-6wTvdyqVJk,3280
 tests/bundle/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
 tests/bundle/test_bundle_ckpt_export.py,sha256=VnpigCoBAAc2lo0rWOpVMg0IYGB6vbHXL8xLtB1Pkio,4622
-tests/bundle/test_bundle_download.py,sha256=QaQOde6MCpUeHhoYNTd1GjDQmT0j01kTMw53qocOzxQ,20695
+tests/bundle/test_bundle_download.py,sha256=snf7bfFbiLaQoXOC9nR3w7RVYQv1t2l1qMjSlzyIBDE,20213
 tests/bundle/test_bundle_get_data.py,sha256=lQh321mev_7fsLXRg0Tq5uEjuQILethDHRKzB6VV0o4,3667
 tests/bundle/test_bundle_push_to_hf_hub.py,sha256=Zjl6xDwRKgkS6jvO5dzMBaTLEd4EXyMXp0_wzDNSY3g,1740
 tests/bundle/test_bundle_trt_export.py,sha256=png-2SGjBSt46LXSz-PLprOXwJ0WkC_3YLR3Ibk_WBc,6344
@@ -1189,7 +1189,7 @@ tests/visualize/test_vis_gradcam.py,sha256=WpA-pvTB75eZs7JoIc5qyvOV9PwgkzWI8-Vow
 tests/visualize/utils/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
 tests/visualize/utils/test_blend_images.py,sha256=RVs2p_8RWQDfhLHDNNtZaMig27v8o0km7XxNa-zWjKE,2274
 tests/visualize/utils/test_matshow3d.py,sha256=wXYj77L5Jvnp0f6DvL1rsi_-YlCxS0HJ9hiPmrbpuP8,5021
-monai_weekly-1.5.dev2519.dist-info/METADATA,sha256=qit8fwiG7yXW-iXJqSdNUo3ghhoQqkFfx2lN1erfdLI,12033
-monai_weekly-1.5.dev2519.dist-info/WHEEL,sha256=DnLRTWE75wApRYVsjgc6wsVswC54sMSJhAEd4xhDpBk,91
-monai_weekly-1.5.dev2519.dist-info/top_level.txt,sha256=hn2Y6P9xBf2R8faMeVMHhPMvrdDKxMsIOwMDYI0yTjs,12
-monai_weekly-1.5.dev2519.dist-info/RECORD,,
+monai_weekly-1.5.dev2520.dist-info/METADATA,sha256=cEQRrwHZy0OXogNJ_cv8V4R0rgImFPY_Cqbs3ysjtvQ,12033
+monai_weekly-1.5.dev2520.dist-info/WHEEL,sha256=Nw36Djuh_5VDukK0H78QzOX-_FQEo6V37m3nkm96gtU,91
+monai_weekly-1.5.dev2520.dist-info/top_level.txt,sha256=hn2Y6P9xBf2R8faMeVMHhPMvrdDKxMsIOwMDYI0yTjs,12
+monai_weekly-1.5.dev2520.dist-info/RECORD,,

{monai_weekly-1.5.dev2519.dist-info → monai_weekly-1.5.dev2520.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.4.0)
+Generator: setuptools (80.7.1)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

tests/bundle/test_bundle_download.py

@@ -268,11 +268,10 @@ class TestLoad(unittest.TestCase):
     @skip_if_quick
     def test_load_weights(self, bundle_files, bundle_name, repo, device, model_file):
         with skip_if_downloading_fails():
-            # download bundle, and load weights from the downloaded path
             with tempfile.TemporaryDirectory() as tempdir:
                 bundle_root = os.path.join(tempdir, bundle_name)
                 # load weights
-                weights = load(
+                model_1 = load(
                     name=bundle_name,
                     model_file=model_file,
                     bundle_dir=tempdir,
@@ -280,7 +279,6 @@ class TestLoad(unittest.TestCase):
                     source="github",
                     progress=False,
                     device=device,
-                    return_state_dict=True,
                 )
                 # prepare network
                 with open(os.path.join(bundle_root, bundle_files[2])) as f:
@@ -289,7 +287,7 @@ class TestLoad(unittest.TestCase):
                 del net_args["_target_"]
                 model = getattr(nets, model_name)(**net_args)
                 model.to(device)
-                model.load_state_dict(weights)
+                model.load_state_dict(model_1)
                 model.eval()
 
                 # prepare data and test
@@ -313,13 +311,11 @@ class TestLoad(unittest.TestCase):
                     progress=False,
                     device=device,
                     source="github",
-                    return_state_dict=False,
                 )
                 model_2.eval()
                 output_2 = model_2.forward(input_tensor)
                 assert_allclose(output_2, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
 
-                # test compatibility with return_state_dict=True.
                 model_3 = load(
                     name=bundle_name,
                     model_file=model_file,
@@ -328,7 +324,6 @@ class TestLoad(unittest.TestCase):
                     device=device,
                     net_name=model_name,
                     source="github",
-                    return_state_dict=False,
                     **net_args,
                 )
                 model_3.eval()
@@ -343,14 +338,7 @@ class TestLoad(unittest.TestCase):
             # download bundle, and load weights from the downloaded path
             with tempfile.TemporaryDirectory() as tempdir:
                 # load weights
-                model = load(
-                    name=bundle_name,
-                    bundle_dir=tempdir,
-                    source="monaihosting",
-                    progress=False,
-                    device=device,
-                    return_state_dict=False,
-                )
+                model = load(name=bundle_name, bundle_dir=tempdir, source="monaihosting", progress=False, device=device)
 
                 # prepare data and test
                 input_tensor = torch.rand(1, 1, 96, 96, 96).to(device)
@@ -371,7 +359,6 @@ class TestLoad(unittest.TestCase):
                     source="monaihosting",
                     progress=False,
                     device=device,
-                    return_state_dict=False,
                     net_override=net_override,
                 )