modularitypruning 1.4.0__py3-none-any.whl → 1.5.0__py3-none-any.whl

modularitypruning/champ_utilities.py

@@ -1,14 +1,16 @@
-from .partition_utilities import all_degrees, in_degrees, out_degrees, membership_to_communities, \
-    membership_to_layered_communities
+import warnings
 from collections import defaultdict
-import numpy as np
-from numpy.random import choice
 from math import floor
 from multiprocessing import Pool, cpu_count
-from scipy.spatial import HalfspaceIntersection
+
+import numpy as np
+from numpy.random import choice
 from scipy.linalg import LinAlgWarning
 from scipy.optimize import linprog, OptimizeWarning
-import warnings
+from scipy.spatial import HalfspaceIntersection
+
+from .partition_utilities import all_degrees, in_degrees, out_degrees, membership_to_communities, \
+    membership_to_layered_communities
 
 
 def get_interior_point(halfspaces, initial_num_sampled=50, full_retry_limit=10):

modularitypruning/leiden_utilities.py

@@ -1,11 +1,10 @@
 import functools
+from multiprocessing import Pool, cpu_count
+
 import igraph as ig
 import leidenalg
-from math import ceil
-from multiprocessing import Pool, cpu_count
-from tqdm import tqdm
 import numpy as np
-import psutil
+from tqdm import tqdm
 
 LOW_MEMORY_THRESHOLD = 1e9  # 1 GB
 

modularitypruning/louvain_utilities.py

@@ -6,14 +6,16 @@ module ``modularitypruning.louvain_utilities`` now shims single-layer functions
 in ``modularitypruning.leiden_utilities`` (though it still contains the legacy multi-layer functions since they can be
 faster in general -- leidenalg does not efficiently implement multilayer optimization).
 """
-from . import leiden_utilities
-from .leiden_utilities import sorted_tuple, LOW_MEMORY_THRESHOLD
-from .progress import Progress
+import warnings
 from math import ceil
 from multiprocessing import Pool, cpu_count
+
 import numpy as np
 import psutil
-import warnings
+
+from . import leiden_utilities
+from .leiden_utilities import sorted_tuple, LOW_MEMORY_THRESHOLD
+from .progress import Progress
 
 try:
     import louvain  # import louvain if possible

modularitypruning/parameter_estimation.py

@@ -1,8 +1,9 @@
+import leidenalg
+
 from .leiden_utilities import singlelayer_leiden, multilayer_leiden
 from .parameter_estimation_utilities import leiden_part_with_membership, estimate_singlelayer_SBM_parameters, \
     gamma_estimate_from_parameters, omega_function_from_model, estimate_multilayer_SBM_parameters
 from .partition_utilities import in_degrees
-import leidenalg
 
 
 def iterative_monolayer_resolution_parameter_estimation(G, gamma=1.0, tol=1e-2, max_iter=25, verbose=False,

modularitypruning/parameter_estimation_utilities.py

@@ -1,12 +1,14 @@
-from .leiden_utilities import leiden_part_with_membership, sorted_tuple
-from .champ_utilities import CHAMP_2D, CHAMP_3D
-from .partition_utilities import num_communities
+import warnings
+from math import log
+
 import igraph as ig
 import leidenalg
-from math import log
 import numpy as np
 from scipy.optimize import fsolve
-import warnings
+
+from .champ_utilities import CHAMP_2D, CHAMP_3D
+from .leiden_utilities import leiden_part_with_membership, sorted_tuple
+from .partition_utilities import num_communities
 
 
 def estimate_singlelayer_SBM_parameters(G, partition, m=None):

modularitypruning/partition_utilities.py

@@ -1,4 +1,5 @@
 from collections import defaultdict
+
 from sklearn.metrics import adjusted_mutual_info_score, normalized_mutual_info_score
 
 

modularitypruning/plotting.py

@@ -1,12 +1,14 @@
-from .partition_utilities import num_communities, ami
 from collections import defaultdict
 from random import sample, shuffle
-import numpy as np
+
 import matplotlib
-from matplotlib.patches import Polygon
-from matplotlib.collections import PatchCollection
 import matplotlib.pyplot as plt
+import numpy as np
 import seaborn as sbn
+from matplotlib.collections import PatchCollection
+from matplotlib.patches import Polygon
+
+from .partition_utilities import num_communities, ami
 
 
 def plot_adjacency(adj):

{modularitypruning-1.4.0.dist-info → modularitypruning-1.5.0.dist-info}/METADATA

@@ -1,10 +1,9 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: modularitypruning
-Version: 1.4.0
-Summary: Pruning tool to identify small subsets of network partitions that are significant from the perspective of stochastic block model inference.
-Home-page: https://github.com/ragibson/ModularityPruning
-Author: Ryan Gibson
-Author-email: ryan.alex.gibson@gmail.com
+Version: 1.5.0
+Summary: Pruning tool to identify small subsets of network partitions that are significant from the perspective
+Author-email: Ryan Gibson <ryan.alex.gibson@gmail.com>
+License: MIT
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Topic :: Scientific/Engineering :: Information Analysis
 Classifier: Programming Language :: Python :: 3
@@ -13,9 +12,11 @@ Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
 Classifier: Programming Language :: Python :: 3 :: Only
 Classifier: License :: OSI Approved :: MIT License
-Requires-Python: >=3.8, <4
+Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: leidenalg
@@ -24,9 +25,10 @@ Requires-Dist: numpy
 Requires-Dist: psutil
 Requires-Dist: igraph
 Requires-Dist: scikit-learn
-Requires-Dist: scipy >=1.7
+Requires-Dist: scipy>=1.7
 Requires-Dist: seaborn
 Requires-Dist: tqdm
+Dynamic: license-file
 
 # ModularityPruning
 
@@ -47,6 +49,7 @@ https://static-content.springer.com/esm/art%3A10.1038%2Fs41598-022-20142-6/Media
 ).
 
 ## Installation
+
 This project is on [PyPI](https://pypi.org/project/modularitypruning/) and can
 be installed with
 
@@ -61,6 +64,7 @@ Alternatively, you can install it from this repository directly:
     python3 setup.py install
 
 <a name = "Basic Usage"></a>
+
 ## Basic Usage
 
 This package interfaces directly with python-igraph. A simple example of its

modularitypruning-1.5.0.dist-info/RECORD

@@ -0,0 +1,14 @@
+modularitypruning/__init__.py,sha256=U1iz51AVVzHw0aBZeJicxVg_L6TWq5pmv8Ep_bYyySU,238
+modularitypruning/champ_utilities.py,sha256=yRLng9KciNxJst3Ybp24qlRnYvIEIe5Y-ZVsfSijkqc,16350
+modularitypruning/leiden_utilities.py,sha256=kHHYFj30Ezl_YUhgmwEm-vPZ4K7658MqTGegra_4V_8,10360
+modularitypruning/louvain_utilities.py,sha256=duGAK0PlIJvtpo689dNuRNixNXvLIWAPf-5ELGhEHZ4,8233
+modularitypruning/parameter_estimation.py,sha256=n0_VPXa6QvFZqVEKhHSBUrnqQPTLRNGgNLDTsVymYT4,10480
+modularitypruning/parameter_estimation_utilities.py,sha256=teJvq_w1gSjmA2weV9PDKTLN2xgCWgsIQhiY6ZlJ_xU,28152
+modularitypruning/partition_utilities.py,sha256=0hPEftbV6xcYWdusiE65UZG99kqIrALH7Nwo_44KO-Q,957
+modularitypruning/plotting.py,sha256=48yRl0--q1adi415pps1MbTtKtBMQxKVOXoRjPOxu-w,10570
+modularitypruning/progress.py,sha256=XxkEVx8L9BoFnWtvUPg-kWtxUmE1RHqs5p5HPiTExUQ,971
+modularitypruning-1.5.0.dist-info/licenses/LICENSE,sha256=eWz3HIQQxg7p1iSpUOUDKdDhGcuMPuVDDlcXf9F12D8,1068
+modularitypruning-1.5.0.dist-info/METADATA,sha256=Vlq4_S_RBr4nUUuDwPw1n_jYZg4iI2tVP6xrDkCzwGk,3454
+modularitypruning-1.5.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+modularitypruning-1.5.0.dist-info/top_level.txt,sha256=ZPOx3a-ek0Ge0ZMq-uvbySSaAL9MZ-t23-JkuHZXo9E,18
+modularitypruning-1.5.0.dist-info/RECORD,,

{modularitypruning-1.4.0.dist-info → modularitypruning-1.5.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (80.9.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

modularitypruning-1.4.0.dist-info/RECORD

@@ -1,14 +0,0 @@
-modularitypruning/__init__.py,sha256=U1iz51AVVzHw0aBZeJicxVg_L6TWq5pmv8Ep_bYyySU,238
-modularitypruning/champ_utilities.py,sha256=VveP8N9CvMODk3dPtVMRfNLji1pktaolA6iNoW6Fy-A,16348
-modularitypruning/leiden_utilities.py,sha256=sV3BkYONzVmKlpy-gUUUoL8XfKhwpytMRmCcijbsAiA,10395
-modularitypruning/louvain_utilities.py,sha256=Zt58Wl4hgu6-zejdl-N_NW04UC4rbYmSHgpfoGDC2Ws,8231
-modularitypruning/parameter_estimation.py,sha256=EPU5BDDauToPbAdG1lZc9p5Rl_oDqiC7bltfnjs5tg8,10479
-modularitypruning/parameter_estimation_utilities.py,sha256=OzgJT4jOo2ovoHzUbS0m40l2cqqOk9tBU9cF35Tmm_M,28150
-modularitypruning/partition_utilities.py,sha256=Fizqd0JuODL8W4BP2h8iV0WhZMK6HoKjH_QFNVDZkaI,956
-modularitypruning/plotting.py,sha256=3JqJOpfoq_Vj_6y8nqrYHhkSqDdI56iAb4pSAMcgEmI,10568
-modularitypruning/progress.py,sha256=XxkEVx8L9BoFnWtvUPg-kWtxUmE1RHqs5p5HPiTExUQ,971
-modularitypruning-1.4.0.dist-info/LICENSE,sha256=eWz3HIQQxg7p1iSpUOUDKdDhGcuMPuVDDlcXf9F12D8,1068
-modularitypruning-1.4.0.dist-info/METADATA,sha256=ZtLw4-g6NiP2r4G3Wcfk_ND_5wTjrNCn8etyjOkx5QM,3420
-modularitypruning-1.4.0.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-modularitypruning-1.4.0.dist-info/top_level.txt,sha256=ZPOx3a-ek0Ge0ZMq-uvbySSaAL9MZ-t23-JkuHZXo9E,18
-modularitypruning-1.4.0.dist-info/RECORD,,