metaflow 2.12.39__py2.py3-none-any.whl → 2.13.1__py2.py3-none-any.whl

metaflow/plugins/kubernetes/kubernetes_cli.py

@@ -3,14 +3,17 @@ import sys
 import time
 import traceback
 
-from metaflow.plugins.kubernetes.kube_utils import parse_cli_options
+from metaflow.plugins.kubernetes.kube_utils import (
+    parse_cli_options,
+    parse_kube_keyvalue_list,
+)
 from metaflow.plugins.kubernetes.kubernetes_client import KubernetesClient
 import metaflow.tracing as tracing
 from metaflow import JSONTypeClass, util
 from metaflow._vendor import click
 from metaflow.exception import METAFLOW_EXIT_DISALLOW_RETRY, MetaflowException
 from metaflow.metadata_provider.util import sync_local_metadata_from_datastore
-from metaflow.metaflow_config import DATASTORE_LOCAL_DIR, KUBERNETES_LABELS
+from metaflow.metaflow_config import DATASTORE_LOCAL_DIR
 from metaflow.mflog import TASK_LOG_SOURCE
 from metaflow.unbounded_foreach import UBF_CONTROL, UBF_TASK
 
@@ -18,9 +21,7 @@ from .kubernetes import (
     Kubernetes,
     KubernetesException,
     KubernetesKilledException,
-    parse_kube_keyvalue_list,
 )
-from .kubernetes_decorator import KubernetesDecorator
 
 
 @click.group()
@@ -132,6 +133,18 @@ def kubernetes():
     type=str,
     help="Quality of Service class for the Kubernetes pod",
 )
+@click.option(
+    "--labels",
+    default=None,
+    type=JSONTypeClass(),
+    multiple=False,
+)
+@click.option(
+    "--annotations",
+    default=None,
+    type=JSONTypeClass(),
+    multiple=False,
+)
 @click.pass_context
 def step(
     ctx,
@@ -161,6 +174,8 @@ def step(
     port=None,
     num_parallel=None,
     qos=None,
+    labels=None,
+    annotations=None,
     **kwargs
 ):
     def echo(msg, stream="stderr", job_id=None, **kwargs):
@@ -302,8 +317,10 @@ def step(
                 port=port,
                 num_parallel=num_parallel,
                 qos=qos,
+                labels=labels,
+                annotations=annotations,
             )
-    except Exception as e:
+    except Exception:
         traceback.print_exc(chain=False)
         _sync_metadata()
         sys.exit(METAFLOW_EXIT_DISALLOW_RETRY)

metaflow/plugins/kubernetes/kubernetes_decorator.py

@@ -19,6 +19,8 @@ from metaflow.metaflow_config import (
     KUBERNETES_GPU_VENDOR,
     KUBERNETES_IMAGE_PULL_POLICY,
     KUBERNETES_MEMORY,
+    KUBERNETES_LABELS,
+    KUBERNETES_ANNOTATIONS,
     KUBERNETES_NAMESPACE,
     KUBERNETES_NODE_SELECTOR,
     KUBERNETES_PERSISTENT_VOLUME_CLAIMS,
@@ -34,7 +36,8 @@ from metaflow.sidecar import Sidecar
 from metaflow.unbounded_foreach import UBF_CONTROL
 
 from ..aws.aws_utils import get_docker_registry, get_ec2_instance_metadata
-from .kubernetes import KubernetesException, parse_kube_keyvalue_list
+from .kubernetes import KubernetesException
+from .kube_utils import validate_kube_labels, parse_kube_keyvalue_list
 
 try:
     unicode
@@ -89,6 +92,10 @@ class KubernetesDecorator(StepDecorator):
     tolerations : List[str], default []
         The default is extracted from METAFLOW_KUBERNETES_TOLERATIONS.
         Kubernetes tolerations to use when launching pod in Kubernetes.
+    labels: Dict[str, str], default: METAFLOW_KUBERNETES_LABELS
+        Kubernetes labels to use when launching pod in Kubernetes.
+    annotations: Dict[str, str], default: METAFLOW_KUBERNETES_ANNOTATIONS
+        Kubernetes annotations to use when launching pod in Kubernetes.
     use_tmpfs : bool, default False
         This enables an explicit tmpfs mount for this step.
     tmpfs_tempdir : bool, default True
@@ -131,6 +138,8 @@ class KubernetesDecorator(StepDecorator):
         "gpu_vendor": None,
         "tolerations": None,  # e.g., [{"key": "arch", "operator": "Equal", "value": "amd"},
         #                              {"key": "foo", "operator": "Equal", "value": "bar"}]
+        "labels": None,  # e.g. {"test-label": "value", "another-label":"value2"}
+        "annotations": None,  # e.g. {"note": "value", "another-note": "value2"}
         "use_tmpfs": None,
         "tmpfs_tempdir": True,
         "tmpfs_size": None,
@@ -217,6 +226,36 @@ class KubernetesDecorator(StepDecorator):
             self.attributes["memory"] = KUBERNETES_MEMORY
         if self.attributes["disk"] == self.defaults["disk"] and KUBERNETES_DISK:
             self.attributes["disk"] = KUBERNETES_DISK
+        # Label source precedence (decreasing):
+        # - System labels (set outside of decorator)
+        # - Decorator labels: @kubernetes(labels={})
+        # - Environment variable labels: METAFLOW_KUBERNETES_LABELS=
+        deco_labels = {}
+        if self.attributes["labels"] is not None:
+            deco_labels = self.attributes["labels"]
+
+        env_labels = {}
+        if KUBERNETES_LABELS:
+            env_labels = parse_kube_keyvalue_list(KUBERNETES_LABELS.split(","), False)
+
+        self.attributes["labels"] = {**env_labels, **deco_labels}
+
+        # Annotations
+        # annotation precedence (decreasing):
+        # - System annotations (set outside of decorator)
+        # - Decorator annotations: @kubernetes(annotations={})
+        # - Environment annotations: METAFLOW_KUBERNETES_ANNOTATIONS=
+        deco_annotations = {}
+        if self.attributes["annotations"] is not None:
+            deco_annotations = self.attributes["annotations"]
+
+        env_annotations = {}
+        if KUBERNETES_ANNOTATIONS:
+            env_annotations = parse_kube_keyvalue_list(
+                KUBERNETES_ANNOTATIONS.split(","), False
+            )
+
+        self.attributes["annotations"] = {**env_annotations, **deco_annotations}
 
         # If no docker image is explicitly specified, impute a default image.
         if not self.attributes["image"]:
@@ -371,6 +410,9 @@ class KubernetesDecorator(StepDecorator):
                     )
                 )
 
+        validate_kube_labels(self.attributes["labels"])
+        # TODO: add validation to annotations as well?
+
     def package_init(self, flow, step_name, environment):
         try:
             # Kubernetes is a soft dependency.
@@ -426,7 +468,12 @@ class KubernetesDecorator(StepDecorator):
                         "=".join([key, str(val)]) if val else key
                         for key, val in v.items()
                     ]
-                elif k in ["tolerations", "persistent_volume_claims"]:
+                elif k in [
+                    "tolerations",
+                    "persistent_volume_claims",
+                    "labels",
+                    "annotations",
+                ]:
                     cli_args.command_options[k] = json.dumps(v)
                 else:
                     cli_args.command_options[k] = v

metaflow/plugins/kubernetes/kubernetes_job.py

@@ -1,22 +1,19 @@
-import copy
 import json
 import math
 import random
-import sys
 import time
 
 from metaflow.exception import MetaflowException
 from metaflow.metaflow_config import KUBERNETES_SECRETS
 from metaflow.tracing import inject_tracing_vars
-from metaflow.unbounded_foreach import UBF_CONTROL, UBF_TASK
 
 CLIENT_REFRESH_INTERVAL_SECONDS = 300
+
+from .kube_utils import qos_requests_and_limits
 from .kubernetes_jobsets import (
     KubernetesJobSet,
 )  # We need this import for Kubernetes Client.
 
-from .kube_utils import qos_requests_and_limits
-
 
 class KubernetesJobException(MetaflowException):
     headline = "Kubernetes job error"
@@ -430,7 +427,7 @@ class RunningJob(object):
         def best_effort_kill():
             try:
                 self.kill()
-            except Exception as ex:
+            except Exception:
                 pass
 
         atexit.register(best_effort_kill)

metaflow/plugins/kubernetes/kubernetes_jobsets.py

@@ -1,4 +1,3 @@
-import copy
 import json
 import math
 import random
@@ -7,7 +6,6 @@ from collections import namedtuple
 from metaflow.exception import MetaflowException
 from metaflow.metaflow_config import KUBERNETES_JOBSET_GROUP, KUBERNETES_JOBSET_VERSION
 from metaflow.tracing import inject_tracing_vars
-from metaflow.metaflow_config import KUBERNETES_SECRETS
 
 from .kube_utils import qos_requests_and_limits
 
@@ -257,7 +255,7 @@ class RunningJobSet(object):
         def best_effort_kill():
             try:
                 self.kill()
-            except Exception as ex:
+            except Exception:
                 pass
 
         atexit.register(best_effort_kill)
@@ -342,7 +340,7 @@ class RunningJobSet(object):
                 stdout=True,
                 tty=False,
             )
-        except Exception as e:
+        except Exception:
             with client.ApiClient() as api_client:
                 # If we are unable to kill the control pod then
                 # Delete the jobset to kill the subsequent pods.
@@ -862,6 +860,16 @@ class KubernetesJobSet(object):
         self._annotations = dict(self._annotations, **{name: value})
         return self
 
+    def labels(self, labels):
+        for k, v in labels.items():
+            self.label(k, v)
+        return self
+
+    def annotations(self, annotations):
+        for k, v in annotations.items():
+            self.annotation(k, v)
+        return self
+
     def secret(self, name):
         self.worker.secret(name)
         self.control.secret(name)
@@ -987,15 +995,24 @@ class KubernetesArgoJobSet(object):
         self._labels = dict(self._labels, **{name: value})
         return self
 
+    def labels(self, labels):
+        for k, v in labels.items():
+            self.label(k, v)
+        return self
+
     def annotation(self, name, value):
         self.worker.annotation(name, value)
         self.control.annotation(name, value)
         self._annotations = dict(self._annotations, **{name: value})
         return self
 
+    def annotations(self, annotations):
+        for k, v in annotations.items():
+            self.annotation(k, v)
+        return self
+
     def dump(self):
         client = self._kubernetes_sdk
-        import json
 
         data = json.dumps(
             client.ApiClient().sanitize_for_serialization(

metaflow/plugins/pypi/bootstrap.py

@@ -1,4 +1,5 @@
 import bz2
+import concurrent.futures
 import io
 import json
 import os
@@ -6,21 +7,33 @@ import shutil
 import subprocess
 import sys
 import tarfile
-
+import time
+from urllib.error import URLError
+from urllib.request import urlopen
 from metaflow.metaflow_config import DATASTORE_LOCAL_DIR
 from metaflow.plugins import DATASTORES
+from metaflow.plugins.pypi.utils import MICROMAMBA_MIRROR_URL, MICROMAMBA_URL
 from metaflow.util import which
+from urllib.request import Request
+import warnings
 
 from . import MAGIC_FILE, _datastore_packageroot
 
 # Bootstraps a valid conda virtual environment composed of conda and pypi packages
 
-if __name__ == "__main__":
-    if len(sys.argv) != 5:
-        print("Usage: bootstrap.py <flow_name> <id> <datastore_type> <architecture>")
-        sys.exit(1)
-    _, flow_name, id_, datastore_type, architecture = sys.argv
 
+def timer(func):
+    def wrapper(*args, **kwargs):
+        start_time = time.time()
+        result = func(*args, **kwargs)
+        duration = time.time() - start_time
+        # print(f"Time taken for {func.__name__}: {duration:.2f} seconds")
+        return result
+
+    return wrapper
+
+
+if __name__ == "__main__":
     # TODO: Detect architecture on the fly when dealing with arm architectures.
     # ARCH=$(uname -m)
     # OS=$(uname)
@@ -45,96 +58,251 @@ if __name__ == "__main__":
     #     fi
     # fi
 
-    prefix = os.path.join(os.getcwd(), architecture, id_)
-    pkgs_dir = os.path.join(os.getcwd(), ".pkgs")
-    manifest_dir = os.path.join(os.getcwd(), DATASTORE_LOCAL_DIR, flow_name)
+    def run_cmd(cmd):
+        result = subprocess.run(
+            cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True
+        )
+        if result.returncode != 0:
+            print(f"Bootstrap failed while executing: {cmd}")
+            print("Stdout:", result.stdout)
+            print("Stderr:", result.stderr)
+            sys.exit(1)
 
-    datastores = [d for d in DATASTORES if d.TYPE == datastore_type]
-    if not datastores:
-        print(f"No datastore found for type: {datastore_type}")
-        sys.exit(1)
+    @timer
+    def install_micromamba(architecture):
+        micromamba_dir = os.path.join(os.getcwd(), "micromamba")
+        micromamba_path = os.path.join(micromamba_dir, "bin", "micromamba")
+
+        if which("micromamba"):
+            return which("micromamba")
+        if os.path.exists(micromamba_path):
+            os.environ["PATH"] += os.pathsep + os.path.dirname(micromamba_path)
+            return micromamba_path
+
+        # Download and extract in one go
+        url = MICROMAMBA_URL.format(platform=architecture, version="2.0.4")
+        mirror_url = MICROMAMBA_MIRROR_URL.format(
+            platform=architecture, version="2.0.4"
+        )
+
+        # Prepare directory once
+        os.makedirs(os.path.dirname(micromamba_path), exist_ok=True)
+
+        # Download and decompress in one go
+        def _download_and_extract(url):
+            headers = {
+                "Accept-Encoding": "gzip, deflate, br",
+                "Connection": "keep-alive",
+                "User-Agent": "python-urllib",
+            }
+
+            max_retries = 3
+            for attempt in range(max_retries):
+                try:
+                    req = Request(url, headers=headers)
 
-    storage = datastores[0](
-        _datastore_packageroot(datastores[0], lambda *args, **kwargs: None)
-    )
+                    with urlopen(req) as response:
+                        decompressor = bz2.BZ2Decompressor()
+                        with warnings.catch_warnings():
+                            warnings.filterwarnings(
+                                "ignore", category=DeprecationWarning
+                            )
+                            with tarfile.open(
+                                fileobj=io.BytesIO(
+                                    decompressor.decompress(response.read())
+                                ),
+                                mode="r:",
+                            ) as tar:
+                                member = tar.getmember("bin/micromamba")
+                                tar.extract(member, micromamba_dir)
+                    break
+                except (URLError, IOError) as e:
+                    if attempt == max_retries - 1:
+                        raise Exception(
+                            f"Failed to download micromamba after {max_retries} attempts: {e}"
+                        )
+                    time.sleep(2**attempt)
 
-    # Move MAGIC_FILE inside local datastore.
-    os.makedirs(manifest_dir, exist_ok=True)
-    shutil.move(
-        os.path.join(os.getcwd(), MAGIC_FILE),
-        os.path.join(manifest_dir, MAGIC_FILE),
-    )
+        try:
+            # first try from mirror
+            _download_and_extract(mirror_url)
+        except Exception:
+            # download from mirror failed, try official source before failing.
+            _download_and_extract(url)
 
-    with open(os.path.join(manifest_dir, MAGIC_FILE)) as f:
-        env = json.load(f)[id_][architecture]
+        # Set executable permission
+        os.chmod(micromamba_path, 0o755)
 
-    # Download Conda packages.
-    conda_pkgs_dir = os.path.join(pkgs_dir, "conda")
-    with storage.load_bytes([package["path"] for package in env["conda"]]) as results:
-        for key, tmpfile, _ in results:
+        # Update PATH only once at the end
+        os.environ["PATH"] += os.pathsep + os.path.dirname(micromamba_path)
+        return micromamba_path
+
+    @timer
+    def download_conda_packages(storage, packages, dest_dir):
+        def process_conda_package(args):
             # Ensure that conda packages go into architecture specific folders.
             # The path looks like REPO/CHANNEL/CONDA_SUBDIR/PACKAGE. We trick
             # Micromamba into believing that all packages are coming from a local
             # channel - the only hurdle is ensuring that packages are organised
             # properly.
-
-            # TODO: consider RAM disk
-            dest = os.path.join(conda_pkgs_dir, "/".join(key.split("/")[-2:]))
+            key, tmpfile, dest_dir = args
+            dest = os.path.join(dest_dir, "/".join(key.split("/")[-2:]))
             os.makedirs(os.path.dirname(dest), exist_ok=True)
             shutil.move(tmpfile, dest)
 
-    # Create Conda environment.
-    cmds = [
-        # TODO: check if mamba or conda are already available on the image
-        # TODO: micromamba installation can be pawned off to micromamba.py
-        f"""set -e;
-        if ! command -v micromamba >/dev/null 2>&1; then
-            mkdir -p micromamba;
-            python -c "import requests, bz2, sys; data = requests.get('https://micro.mamba.pm/api/micromamba/{architecture}/1.5.7').content; sys.stdout.buffer.write(bz2.decompress(data))" | tar -xv -C $(pwd)/micromamba bin/micromamba --strip-components 1;
+        os.makedirs(dest_dir, exist_ok=True)
+        with storage.load_bytes([package["path"] for package in packages]) as results:
+            with concurrent.futures.ThreadPoolExecutor() as executor:
+                executor.map(
+                    process_conda_package,
+                    [(key, tmpfile, dest_dir) for key, tmpfile, _ in results],
+                )
+            # for key, tmpfile, _ in results:
+
+            #     # TODO: consider RAM disk
+            #     dest = os.path.join(dest_dir, "/".join(key.split("/")[-2:]))
+            #     os.makedirs(os.path.dirname(dest), exist_ok=True)
+            #     shutil.move(tmpfile, dest)
+        return dest_dir
+
+    @timer
+    def download_pypi_packages(storage, packages, dest_dir):
+        def process_pypi_package(args):
+            key, tmpfile, dest_dir = args
+            dest = os.path.join(dest_dir, os.path.basename(key))
+            shutil.move(tmpfile, dest)
+
+        os.makedirs(dest_dir, exist_ok=True)
+        with storage.load_bytes([package["path"] for package in packages]) as results:
+            with concurrent.futures.ThreadPoolExecutor() as executor:
+                executor.map(
+                    process_pypi_package,
+                    [(key, tmpfile, dest_dir) for key, tmpfile, _ in results],
+                )
+            # for key, tmpfile, _ in results:
+            #     dest = os.path.join(dest_dir, os.path.basename(key))
+            #     shutil.move(tmpfile, dest)
+        return dest_dir
+
+    @timer
+    def create_conda_environment(prefix, conda_pkgs_dir):
+        cmd = f'''set -e;
+            tmpfile=$(mktemp);
+            echo "@EXPLICIT" > "$tmpfile";
+            ls -d {conda_pkgs_dir}/*/* >> "$tmpfile";
+            export PATH=$PATH:$(pwd)/micromamba;
+            export CONDA_PKGS_DIRS=$(pwd)/micromamba/pkgs;
+            export MAMBA_NO_LOW_SPEED_LIMIT=1;
+            export MAMBA_USE_INDEX_CACHE=1;
+            export MAMBA_NO_PROGRESS_BARS=1;
+            export CONDA_FETCH_THREADS=1;
+            micromamba create --yes --offline --no-deps \
+                --safety-checks=disabled --no-extra-safety-checks \
+                --prefix {prefix} --file "$tmpfile" \
+                --no-pyc --no-rc --always-copy;
+            rm "$tmpfile"'''
+        run_cmd(cmd)
+
+    @timer
+    def install_pypi_packages(prefix, pypi_pkgs_dir):
+        cmd = f"""set -e;
             export PATH=$PATH:$(pwd)/micromamba;
-            if ! command -v micromamba >/dev/null 2>&1; then
-                echo "Failed to install Micromamba!";
-                exit 1;
-            fi;
-        fi""",
-        # Create a conda environment through Micromamba.
-        f'''set -e;
-        tmpfile=$(mktemp);
-        echo "@EXPLICIT" > "$tmpfile";
-        ls -d {conda_pkgs_dir}/*/* >> "$tmpfile";
-        export PATH=$PATH:$(pwd)/micromamba;
-        export CONDA_PKGS_DIRS=$(pwd)/micromamba/pkgs;
-        micromamba create --yes --offline --no-deps --safety-checks=disabled --no-extra-safety-checks --prefix {prefix} --file "$tmpfile";
-        rm "$tmpfile"''',
-    ]
-
-    # Download PyPI packages.
-    if "pypi" in env:
+            export CONDA_PKGS_DIRS=$(pwd)/micromamba/pkgs;
+            micromamba run --prefix {prefix} python -m pip --disable-pip-version-check \
+                install --root-user-action=ignore --no-compile --no-index \
+                --no-cache-dir --no-deps --prefer-binary \
+                --find-links={pypi_pkgs_dir}  --no-user \
+                --no-warn-script-location --no-input \
+                {pypi_pkgs_dir}/*.whl
+            """
+        run_cmd(cmd)
+
+    @timer
+    def setup_environment(
+        architecture, storage, env, prefix, conda_pkgs_dir, pypi_pkgs_dir
+    ):
+        with concurrent.futures.ThreadPoolExecutor(max_workers=10) as executor:
+            # install micromamba, download conda and pypi packages in parallel
+            futures = {
+                "micromamba": executor.submit(install_micromamba, architecture),
+                "conda_pkgs": executor.submit(
+                    download_conda_packages, storage, env["conda"], conda_pkgs_dir
+                ),
+            }
+            if "pypi" in env:
+                futures["pypi_pkgs"] = executor.submit(
+                    download_pypi_packages, storage, env["pypi"], pypi_pkgs_dir
+                )
+
+            # create conda environment after micromamba is installed and conda packages are downloaded
+            done, _ = concurrent.futures.wait(
+                [futures["micromamba"], futures["conda_pkgs"]],
+                return_when=concurrent.futures.ALL_COMPLETED,
+            )
+
+            for future in done:
+                future.result()
+
+            # start conda environment creation
+            futures["conda_env"] = executor.submit(
+                create_conda_environment, prefix, conda_pkgs_dir
+            )
+
+            if "pypi" in env:
+                # install pypi packages after conda environment is created and pypi packages are downloaded
+                done, _ = concurrent.futures.wait(
+                    [futures["conda_env"], futures["pypi_pkgs"]],
+                    return_when=concurrent.futures.ALL_COMPLETED,
+                )
+
+                for future in done:
+                    future.result()
+
+                # install pypi packages
+                futures["pypi_install"] = executor.submit(
+                    install_pypi_packages, prefix, pypi_pkgs_dir
+                )
+                # wait for pypi packages to be installed
+                futures["pypi_install"].result()
+            else:
+                # wait for conda environment to be created
+                futures["conda_env"].result()
+
+    if len(sys.argv) != 5:
+        print("Usage: bootstrap.py <flow_name> <id> <datastore_type> <architecture>")
+        sys.exit(1)
+
+    try:
+        _, flow_name, id_, datastore_type, architecture = sys.argv
+
+        prefix = os.path.join(os.getcwd(), architecture, id_)
+        pkgs_dir = os.path.join(os.getcwd(), ".pkgs")
+        conda_pkgs_dir = os.path.join(pkgs_dir, "conda")
         pypi_pkgs_dir = os.path.join(pkgs_dir, "pypi")
-        with storage.load_bytes(
-            [package["path"] for package in env["pypi"]]
-        ) as results:
-            for key, tmpfile, _ in results:
-                dest = os.path.join(pypi_pkgs_dir, os.path.basename(key))
-                os.makedirs(os.path.dirname(dest), exist_ok=True)
-                shutil.move(tmpfile, dest)
-
-        # Install PyPI packages.
-        cmds.extend(
-            [
-                f"""set -e;
-                export PATH=$PATH:$(pwd)/micromamba;
-                export CONDA_PKGS_DIRS=$(pwd)/micromamba/pkgs;
-                micromamba run --prefix {prefix} python -m pip --disable-pip-version-check install --root-user-action=ignore --no-compile {pypi_pkgs_dir}/*.whl --no-user"""
-            ]
+        manifest_dir = os.path.join(os.getcwd(), DATASTORE_LOCAL_DIR, flow_name)
+
+        datastores = [d for d in DATASTORES if d.TYPE == datastore_type]
+        if not datastores:
+            print(f"No datastore found for type: {datastore_type}")
+            sys.exit(1)
+
+        storage = datastores[0](
+            _datastore_packageroot(datastores[0], lambda *args, **kwargs: None)
         )
 
-    for cmd in cmds:
-        result = subprocess.run(
-            cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE
+        # Move MAGIC_FILE inside local datastore.
+        os.makedirs(manifest_dir, exist_ok=True)
+        shutil.move(
+            os.path.join(os.getcwd(), MAGIC_FILE),
+            os.path.join(manifest_dir, MAGIC_FILE),
         )
-        if result.returncode != 0:
-            print(f"Bootstrap failed while executing: {cmd}")
-            print("Stdout:", result.stdout.decode())
-            print("Stderr:", result.stderr.decode())
-            sys.exit(1)
+        with open(os.path.join(manifest_dir, MAGIC_FILE)) as f:
+            env = json.load(f)[id_][architecture]
+
+        setup_environment(
+            architecture, storage, env, prefix, conda_pkgs_dir, pypi_pkgs_dir
+        )
+
+    except Exception as e:
+        print(f"Error: {str(e)}", file=sys.stderr)
+        sys.exit(1)