meta-edc 0.3.7__py3-none-any.whl → 0.3.15__py3-none-any.whl

meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py

@@ -0,0 +1,44 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:20
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more"),
+    ]
+
+    operations = [
+        migrations.RenameField(
+            model_name="glucosefbg",
+            old_name="glucose_quantifier",
+            new_name="fbg_quantifier",
+        ),
+        migrations.RenameField(
+            model_name="glucosefbg",
+            old_name="glucose_units",
+            new_name="fbg_units",
+        ),
+        migrations.RenameField(
+            model_name="historicalglucosefbg",
+            old_name="glucose_quantifier",
+            new_name="fbg_quantifier",
+        ),
+        migrations.RenameField(
+            model_name="historicalglucosefbg",
+            old_name="glucose_units",
+            new_name="fbg_units",
+        ),
+        migrations.RenameField(
+            model_name="glucosefbg",
+            old_name="glucose_value",
+            new_name="fbg_value",
+        ),
+        migrations.RenameField(
+            model_name="historicalglucosefbg",
+            old_name="glucose_value",
+            new_name="fbg_value",
+        ),
+    ]

meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py

@@ -0,0 +1,44 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:22
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fbg_value",
+            field=models.DecimalField(
+                blank=True,
+                decimal_places=2,
+                max_digits=8,
+                null=True,
+                validators=[
+                    django.core.validators.MinValueValidator(1.0),
+                    django.core.validators.MaxValueValidator(9999.99),
+                ],
+                verbose_name="Glucose (FBG)",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fbg_value",
+            field=models.DecimalField(
+                blank=True,
+                decimal_places=2,
+                max_digits=8,
+                null=True,
+                validators=[
+                    django.core.validators.MinValueValidator(1.0),
+                    django.core.validators.MaxValueValidator(9999.99),
+                ],
+                verbose_name="Glucose (FBG)",
+            ),
+        ),
+    ]

meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py

@@ -0,0 +1,166 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:32
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0193_alter_glucosefbg_fbg_value_and_more"),
+    ]
+
+    operations = [
+        migrations.RenameField(
+            model_name="glucosefbg",
+            old_name="assay_datetime",
+            new_name="fbg_datetime",
+        ),
+        migrations.RenameField(
+            model_name="historicalglucosefbg",
+            old_name="assay_datetime",
+            new_name="fbg_datetime",
+        ),
+        migrations.AddField(
+            model_name="glucosefbg",
+            name="fasting_duration_minutes",
+            field=models.IntegerField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+        migrations.AddField(
+            model_name="glucosefbg",
+            name="fasting_duration_str",
+            field=models.CharField(
+                blank=True,
+                help_text="As reported by patient. Duration of fast. Format is `HHhMMm`. For example 1h23m, 12h7m, etc",
+                max_length=8,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        "^([0-9]{1,3}h([0-5]?[0-9]m)?)$",
+                        message="Invalid format. Expected something like 1h20m, 11h5m, etc. No spaces allowed.",
+                    )
+                ],
+                verbose_name="How long have they fasted in hours and/or minutes?",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalglucosefbg",
+            name="fasting_duration_minutes",
+            field=models.IntegerField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalglucosefbg",
+            name="fasting_duration_str",
+            field=models.CharField(
+                blank=True,
+                help_text="As reported by patient. Duration of fast. Format is `HHhMMm`. For example 1h23m, 12h7m, etc",
+                max_length=8,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        "^([0-9]{1,3}h([0-5]?[0-9]m)?)$",
+                        message="Invalid format. Expected something like 1h20m, 11h5m, etc. No spaces allowed.",
+                    )
+                ],
+                verbose_name="How long have they fasted in hours and/or minutes?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fasting",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                help_text="As reported by patient",
+                max_length=15,
+                null=True,
+                verbose_name="Has the participant fasted?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fbg_quantifier",
+            field=models.CharField(
+                choices=[("=", "="), (">", ">"), (">=", ">="), ("<", "<"), ("<=", "<=")],
+                default="=",
+                max_length=10,
+                verbose_name="FBG quantifier",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fbg_units",
+            field=models.CharField(
+                choices=[
+                    ("mg/dL", "mg/dL"),
+                    ("mmol/L", "mmol/L (millimoles/L)"),
+                    ("N/A", "Not applicable"),
+                ],
+                default="N/A",
+                max_length=15,
+                verbose_name="FBG units",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fbg_value",
+            field=models.DecimalField(
+                blank=True,
+                decimal_places=2,
+                help_text="A `HIGH` reading may be entered as 9999.99",
+                max_digits=8,
+                null=True,
+                verbose_name="FBG level",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fasting",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                help_text="As reported by patient",
+                max_length=15,
+                null=True,
+                verbose_name="Has the participant fasted?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fbg_quantifier",
+            field=models.CharField(
+                choices=[("=", "="), (">", ">"), (">=", ">="), ("<", "<"), ("<=", "<=")],
+                default="=",
+                max_length=10,
+                verbose_name="FBG quantifier",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fbg_units",
+            field=models.CharField(
+                choices=[
+                    ("mg/dL", "mg/dL"),
+                    ("mmol/L", "mmol/L (millimoles/L)"),
+                    ("N/A", "Not applicable"),
+                ],
+                default="N/A",
+                max_length=15,
+                verbose_name="FBG units",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fbg_value",
+            field=models.DecimalField(
+                blank=True,
+                decimal_places=2,
+                help_text="A `HIGH` reading may be entered as 9999.99",
+                max_digits=8,
+                null=True,
+                verbose_name="FBG level",
+            ),
+        ),
+    ]

meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py

@@ -0,0 +1,27 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:34
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0194_remove_glucosefbg_assay_datetime_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fbg_datetime",
+            field=models.DateTimeField(
+                blank=True, null=True, verbose_name="FBG date/time measured"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fbg_datetime",
+            field=models.DateTimeField(
+                blank=True, null=True, verbose_name="FBG date/time measured"
+            ),
+        ),
+    ]

meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py

@@ -0,0 +1,49 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:36
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0195_alter_glucosefbg_fbg_datetime_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="glucosefbg",
+            name="fbg_not_performed_reason",
+            field=models.CharField(
+                blank=True, max_length=150, null=True, verbose_name="If NO, provide reason"
+            ),
+        ),
+        migrations.AddField(
+            model_name="glucosefbg",
+            name="fbg_performed",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                default="Yes",
+                max_length=15,
+                verbose_name="Was the FBG test performed?",
+            ),
+            preserve_default=False,
+        ),
+        migrations.AddField(
+            model_name="historicalglucosefbg",
+            name="fbg_not_performed_reason",
+            field=models.CharField(
+                blank=True, max_length=150, null=True, verbose_name="If NO, provide reason"
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalglucosefbg",
+            name="fbg_performed",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                default="Yes",
+                max_length=15,
+                verbose_name="Was the FBG test performed?",
+            ),
+            preserve_default=False,
+        ),
+    ]

meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py

@@ -0,0 +1,33 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:42
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0196_glucosefbg_fbg_not_performed_reason_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="glucosefbg",
+            name="fasting_duration_estimated",
+            field=models.CharField(
+                default="Yes",
+                editable=False,
+                help_text="Set to YES for existing values before duration question was added to the form, otherwise NO",
+                max_length=15,
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalglucosefbg",
+            name="fasting_duration_estimated",
+            field=models.CharField(
+                default="Yes",
+                editable=False,
+                help_text="Set to YES for existing values before duration question was added to the form, otherwise NO",
+                max_length=15,
+            ),
+        ),
+    ]

meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py

@@ -0,0 +1,33 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:46
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0197_glucosefbg_fasting_duration_estimated_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fasting_duration_estimated",
+            field=models.CharField(
+                default="No",
+                editable=False,
+                help_text="Set to YES for existing values before duration question was added to the form, otherwise NO",
+                max_length=15,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fasting_duration_estimated",
+            field=models.CharField(
+                default="No",
+                editable=False,
+                help_text="Set to YES for existing values before duration question was added to the form, otherwise NO",
+                max_length=15,
+            ),
+        ),
+    ]

meta_subject/migrations/0199_auto_20240516_0247.py

@@ -0,0 +1,18 @@
+# Generated by Django 4.2.11 on 2024-05-15 23:47
+
+from django.db import migrations
+from edc_constants.constants import YES
+
+
+def update_fasting_duration(apps, schema_editor):
+    model_cls = apps.get_model("meta_subject.glucosefbg")
+    model_cls.objects.filter(fasting_duration_estimated=YES).update(fasting_duration_str="8h")
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0198_alter_glucosefbg_fasting_duration_estimated_and_more"),
+    ]
+
+    operations = [migrations.RunPython(update_fasting_duration)]

meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py

@@ -0,0 +1,43 @@
+# Generated by Django 4.2.11 on 2024-05-16 00:07
+
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0199_auto_20240516_0247"),
+    ]
+
+    operations = [
+        migrations.RenameField(
+            model_name="bloodresultsins",
+            old_name="fasting_duration_minutes",
+            new_name="fasting_duration_delta",
+        ),
+        migrations.RenameField(
+            model_name="glucose",
+            old_name="fasting_duration_minutes",
+            new_name="fasting_duration_delta",
+        ),
+        migrations.RenameField(
+            model_name="glucosefbg",
+            old_name="fasting_duration_minutes",
+            new_name="fasting_duration_delta",
+        ),
+        migrations.RenameField(
+            model_name="historicalbloodresultsins",
+            old_name="fasting_duration_minutes",
+            new_name="fasting_duration_delta",
+        ),
+        migrations.RenameField(
+            model_name="historicalglucose",
+            old_name="fasting_duration_minutes",
+            new_name="fasting_duration_delta",
+        ),
+        migrations.RenameField(
+            model_name="historicalglucosefbg",
+            old_name="fasting_duration_minutes",
+            new_name="fasting_duration_delta",
+        ),
+    ]

meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py

@@ -0,0 +1,58 @@
+# Generated by Django 4.2.11 on 2024-05-16 00:43
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        (
+            "meta_subject",
+            "0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more",
+        ),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="bloodresultsins",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucose",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalbloodresultsins",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucose",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True, help_text="system calculated value", null=True
+            ),
+        ),
+    ]

meta_subject/migrations/0202_auto_20240516_0315.py

@@ -0,0 +1,32 @@
+# Generated by Django 4.2.11 on 2024-05-16 00:15
+from django.db import migrations
+from edc_model.utils import duration_hm_to_timedelta
+from tqdm import tqdm
+
+
+def update_duration(apps, schema_editor):
+    for model in [
+        "meta_subject.glucosefbg",
+        "meta_subject.glucose",
+        "meta_subject.bloodresultsins",
+    ]:
+        model_cls = apps.get_model(model)
+        qs = model_cls.objects.all()
+        total = qs.count()
+        for obj in tqdm(qs, total=total):
+            if obj.fasting_duration_str:
+                tdelta = duration_hm_to_timedelta(obj.fasting_duration_str)
+                obj.fasting_duration_delta = tdelta
+                obj.save()
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        (
+            "meta_subject",
+            "0201_alter_bloodresultsins_fasting_duration_delta_and_more",
+        ),
+    ]
+
+    operations = [migrations.RunPython(update_duration)]

meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py

@@ -0,0 +1,67 @@
+# Generated by Django 4.2.11 on 2024-05-16 01:21
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0202_auto_20240516_0315"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="bloodresultsins",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True,
+                help_text="system calculated to microseconds. (hours=microseconds/3.6e+9)",
+                null=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucose",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True,
+                help_text="system calculated to microseconds. (hours=microseconds/3.6e+9)",
+                null=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucosefbg",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True,
+                help_text="system calculated to microseconds. (hours=microseconds/3.6e+9)",
+                null=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalbloodresultsins",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True,
+                help_text="system calculated to microseconds. (hours=microseconds/3.6e+9)",
+                null=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucose",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True,
+                help_text="system calculated to microseconds. (hours=microseconds/3.6e+9)",
+                null=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucosefbg",
+            name="fasting_duration_delta",
+            field=models.DurationField(
+                blank=True,
+                help_text="system calculated to microseconds. (hours=microseconds/3.6e+9)",
+                null=True,
+            ),
+        ),
+    ]

meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py

@@ -0,0 +1,27 @@
+# Generated by Django 4.2.11 on 2024-05-16 01:55
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0203_alter_bloodresultsins_fasting_duration_delta_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="glucosefbg",
+            name="repeat_fbg_date",
+            field=models.DateField(
+                blank=True, help_text="Date should be within 1 week of report date", null=True
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalglucosefbg",
+            name="repeat_fbg_date",
+            field=models.DateField(
+                blank=True, help_text="Date should be within 1 week of report date", null=True
+            ),
+        ),
+    ]