megadetector 5.0.10__py3-none-any.whl → 5.0.12__py3-none-any.whl

{md_utils → megadetector/utils}/azure_utils.py

@@ -8,14 +8,18 @@ Requires azure-storage-blob>=12.4.0
 
 """
 
+#%% Imports
+
 import json
-from md_utils import path_utils
-from typing import Any, Iterable, List, Optional, Tuple, Union
 
+from typing import Any, Iterable, List, Optional, Tuple, Union
 from azure.storage.blob import BlobPrefix, ContainerClient
 
-from md_utils import sas_blob_utils
+from megadetector.utils import path_utils
+from megadetector.utils import sas_blob_utils
+
 
+#%% Functions
 
 def walk_container(container_client: ContainerClient,
                    max_depth: int = -1,

{md_utils → megadetector/utils}/directory_listing.py

@@ -20,7 +20,7 @@ import re
 import azure.common
 from azure.storage.blob import BlobServiceClient, ContentSettings
 
-from md_utils.path_utils import is_image_file
+from megadetector.utils.path_utils import is_image_file
 
 
 #%% Directory enumeration functions

{md_utils → megadetector/utils}/md_tests.py

@@ -337,8 +337,8 @@ def run_python_tests(options):
     
     ## Run inference on an image
     
-    from detection import run_detector
-    from md_visualization import visualization_utils as vis_utils
+    from megadetector.detection import run_detector
+    from megadetector.visualization import visualization_utils as vis_utils
     model_file = 'MDV5A'
     image_fn = os.path.join(options.scratch_dir,options.test_images[0])
     model = run_detector.load_detector(model_file)
@@ -348,8 +348,8 @@ def run_python_tests(options):
     
     ## Run inference on a folder
     
-    from detection.run_detector_batch import load_and_run_detector_batch,write_results_to_file
-    from md_utils import path_utils
+    from megadetector.detection.run_detector_batch import load_and_run_detector_batch,write_results_to_file
+    from megadetector.utils import path_utils
 
     image_folder = os.path.join(options.scratch_dir,'md-test-images')
     assert os.path.isdir(image_folder), 'Test image folder {} is not available'.format(image_folder)
@@ -447,11 +447,11 @@ def run_python_tests(options):
 
     ## Postprocess results
     
-    from api.batch_processing.postprocessing.postprocess_batch_results import \
+    from megadetector.postprocessing.postprocess_batch_results import \
         PostProcessingOptions,process_batch_results
     postprocessing_options = PostProcessingOptions()
     
-    postprocessing_options.api_output_file = inference_output_file
+    postprocessing_options.md_results_file = inference_output_file
     postprocessing_options.output_dir = os.path.join(options.scratch_dir,'postprocessing_output')
     postprocessing_options.image_base_dir = image_folder
     
@@ -462,7 +462,7 @@ def run_python_tests(options):
     
     ## Partial RDE test
     
-    from api.batch_processing.postprocessing.repeat_detection_elimination.repeat_detections_core import \
+    from megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core import \
         RepeatDetectionOptions,find_repeat_detections
     
     rde_options = RepeatDetectionOptions()
@@ -485,7 +485,7 @@ def run_python_tests(options):
         
         ## Video test (single video)
        
-        from detection.process_video import ProcessVideoOptions, process_video
+        from megadetector.detection.process_video import ProcessVideoOptions, process_video
         
         video_options = ProcessVideoOptions()
         video_options.model_file = 'MDV5A'
@@ -521,7 +521,7 @@ def run_python_tests(options):
         
         ## Video test (folder)
         
-        from detection.process_video import ProcessVideoOptions, process_video_folder
+        from megadetector.detection.process_video import ProcessVideoOptions, process_video_folder
         
         video_options = ProcessVideoOptions()
         video_options.model_file = 'MDV5A'
@@ -589,9 +589,9 @@ def run_cli_tests(options):
     image_fn = os.path.join(options.scratch_dir,options.test_images[0])
     output_dir = os.path.join(options.scratch_dir,'single_image_test')
     if options.cli_working_dir is None:
-        cmd = 'python -m detection.run_detector'
+        cmd = 'python -m megadetector.detection.run_detector'
     else:
-        cmd = 'python detection/run_detector.py'
+        cmd = 'python megadetector/detection/run_detector.py'
     cmd += ' {} --image_file {} --output_dir {}'.format(
         model_file,image_fn,output_dir)
     print('Running: {}'.format(cmd))
@@ -613,9 +613,9 @@ def run_cli_tests(options):
     assert os.path.isdir(image_folder), 'Test image folder {} is not available'.format(image_folder)
     inference_output_file = os.path.join(options.scratch_dir,'folder_inference_output.json')
     if options.cli_working_dir is None:
-        cmd = 'python -m detection.run_detector_batch'
+        cmd = 'python -m megadetector.detection.run_detector_batch'
     else:
-        cmd = 'python detection/run_detector_batch.py'
+        cmd = 'python megadetector/detection/run_detector_batch.py'
     cmd += ' {} {} {} --recursive'.format(
         model_file,image_folder,inference_output_file)
     cmd += ' --output_relative_filenames --quiet --include_image_size'
@@ -634,9 +634,9 @@ def run_cli_tests(options):
     postprocessing_output_dir = os.path.join(options.scratch_dir,'postprocessing_output_cli')
     
     if options.cli_working_dir is None:
-        cmd = 'python -m api.batch_processing.postprocessing.postprocess_batch_results'
+        cmd = 'python -m megadetector.postprocessing.postprocess_batch_results'
     else:
-        cmd = 'python api/batch_processing/postprocessing/postprocess_batch_results.py'
+        cmd = 'python megadetector/postprocessing/postprocess_batch_results.py'
     cmd += ' {} {}'.format(
         inference_output_file,postprocessing_output_dir)
     cmd += ' --image_base_dir {}'.format(image_folder)
@@ -649,9 +649,9 @@ def run_cli_tests(options):
     rde_output_dir = os.path.join(options.scratch_dir,'rde_output_cli')
     
     if options.cli_working_dir is None:
-        cmd = 'python -m api.batch_processing.postprocessing.repeat_detection_elimination.find_repeat_detections'
+        cmd = 'python -m megadetector.postprocessing.repeat_detection_elimination.find_repeat_detections'
     else:
-        cmd = 'python  api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py'
+        cmd = 'python  megadetector/postprocessing/repeat_detection_elimination/find_repeat_detections.py'
     cmd += ' {}'.format(inference_output_file)
     cmd += ' --imageBase {}'.format(image_folder)
     cmd += ' --outputBase {}'.format(rde_output_dir)
@@ -671,9 +671,9 @@ def run_cli_tests(options):
     filtered_output_file = inference_output_file.replace('.json','_filtered.json')
     
     if options.cli_working_dir is None:
-        cmd = 'python -m api.batch_processing.postprocessing.repeat_detection_elimination.remove_repeat_detections'
+        cmd = 'python -m megadetector.postprocessing.repeat_detection_elimination.remove_repeat_detections'
     else:
-        cmd = 'python  api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py'
+        cmd = 'python  megadetector/postprocessing/repeat_detection_elimination/remove_repeat_detections.py'
     cmd += ' {} {} {}'.format(inference_output_file,filtered_output_file,filtering_output_dir)
     print('Running: {}'.format(cmd))
     cmd_results = execute_and_print(cmd)
@@ -688,9 +688,9 @@ def run_cli_tests(options):
     tiling_folder = os.path.join(options.scratch_dir,'tiling-folder')
     inference_output_file_tiled = os.path.join(options.scratch_dir,'folder_inference_output_tiled.json')
     if options.cli_working_dir is None:
-        cmd = 'python -m detection.run_tiled_inference'
+        cmd = 'python -m megadetector.detection.run_tiled_inference'
     else:
-        cmd = 'python detection/run_tiled_inference.py'
+        cmd = 'python megadetector/detection/run_tiled_inference.py'
     cmd += ' {} {} {} {}'.format(
         model_file,image_folder,tiling_folder,inference_output_file_tiled)
     cmd += ' --overwrite_handling overwrite'
@@ -714,9 +714,9 @@ def run_cli_tests(options):
         yolo_symlink_folder = os.path.join(options.scratch_dir,'yolo-symlink_folder')
         inference_output_file_yolo_val = os.path.join(options.scratch_dir,'folder_inference_output_yolo_val.json')
         if options.cli_working_dir is None:
-            cmd = 'python -m detection.run_inference_with_yolov5_val'
+            cmd = 'python -m megadetector.detection.run_inference_with_yolov5_val'
         else:
-            cmd = 'python detection/run_inference_with_yolov5_val.py'
+            cmd = 'python megadetector/detection/run_inference_with_yolov5_val.py'
         cmd += ' {} {} {}'.format(
             model_file,image_folder,inference_output_file_yolo_val)
         cmd += ' --yolo_working_folder {}'.format(options.yolo_working_folder)
@@ -745,9 +745,9 @@ def run_cli_tests(options):
         video_fn = os.path.join(options.scratch_dir,options.test_videos[-1])
         output_dir = os.path.join(options.scratch_dir,'single_video_test_cli')
         if options.cli_working_dir is None:
-            cmd = 'python -m detection.process_video'
+            cmd = 'python -m megadetector.detection.process_video'
         else:
-            cmd = 'python detection/process_video.py'
+            cmd = 'python megadetector/detection/process_video.py'
         cmd += ' {} {}'.format(model_file,video_fn)
         cmd += ' --frame_folder {} --frame_rendering_folder {} --output_json_file {} --output_video_file {}'.format(
             frame_folder,frame_rendering_folder,video_inference_output_file,output_video_file)
@@ -765,9 +765,9 @@ def run_cli_tests(options):
     model_file = 'MDV5B'
     inference_output_file_alt = os.path.join(options.scratch_dir,'folder_inference_output_alt.json')
     if options.cli_working_dir is None:
-        cmd = 'python -m detection.run_detector_batch'
+        cmd = 'python -m megadetector.detection.run_detector_batch'
     else:
-        cmd = 'python detection/run_detector_batch.py'
+        cmd = 'python megadetector/detection/run_detector_batch.py'
     cmd += ' {} {} {} --recursive'.format(
         model_file,image_folder,inference_output_file_alt)
     cmd += ' --output_relative_filenames --quiet --include_image_size'
@@ -786,9 +786,9 @@ def run_cli_tests(options):
     results_files_string = '"{}" "{}"'.format(
         inference_output_file,inference_output_file_alt)
     if options.cli_working_dir is None:
-        cmd = 'python -m api.batch_processing.postprocessing.compare_batch_results'
+        cmd = 'python -m megadetector.postprocessing.compare_batch_results'
     else:
-        cmd = 'python api/batch_processing/postprocessing/compare_batch_results.py'
+        cmd = 'python megadetector/postprocessing/compare_batch_results.py'
     cmd += ' {} {} {}'.format(comparison_output_folder,image_folder,results_files_string)
     print('Running: {}'.format(cmd))
     cmd_results = execute_and_print(cmd)

{md_utils → megadetector/utils}/split_locations_into_train_val.py

@@ -17,7 +17,7 @@ import random
 import numpy as np
 
 from collections import defaultdict
-from md_utils.ct_utils import sort_dictionary_by_value
+from megadetector.utils.ct_utils import sort_dictionary_by_value
 from tqdm import tqdm
 
 

{md_utils → megadetector/utils}/write_html_image_list.py

@@ -16,7 +16,7 @@ import os
 import math
 import urllib
 
-from md_utils import path_utils
+from megadetector.utils import path_utils
 
 
 #%% write_html_image_list

{md_visualization → megadetector/visualization}/render_images_with_thumbnails.py

@@ -15,8 +15,8 @@ import random
 
 from PIL import Image
 
-from md_visualization import visualization_utils as vis_utils
-from md_utils import path_utils
+from megadetector.visualization import visualization_utils as vis_utils
+from megadetector.utils import path_utils
 
 
 #%% Support functions
@@ -268,7 +268,7 @@ def main():
         cropped_grid_width,
         output_image_filename, 'right')
     
-    from md_utils import path_utils
+    from megadetector.utils import path_utils
     path_utils.open_file(output_image_filename)
         
 if __name__ == '__main__':

{md_visualization → megadetector/visualization}/visualization_utils.py

@@ -21,11 +21,10 @@ from multiprocessing.pool import Pool
 from tqdm import tqdm
 from functools import partial
 
-from md_utils.path_utils import find_images
-
-from data_management.annotations import annotation_constants
-from data_management.annotations.annotation_constants import (
-    detector_bbox_category_id_to_name)
+from megadetector.utils.path_utils import find_images
+from megadetector.data_management.annotations import annotation_constants
+from megadetector.data_management.annotations.annotation_constants import \
+    detector_bbox_category_id_to_name
 
 ImageFile.LOAD_TRUNCATED_IMAGES = True
 
@@ -1510,7 +1509,7 @@ if False:
     
     #%% Recursive resize test
     
-    from md_visualization.visualization_utils import resize_image_folder # noqa
+    from megadetector.visualization.visualization_utils import resize_image_folder # noqa
     
     input_folder = r"C:\temp\resize-test\in"
     output_folder = r"C:\temp\resize-test\out"
@@ -1522,7 +1521,7 @@ if False:
     
     #%% Integrity checking test
     
-    from md_utils import md_tests
+    from megadetector.utils import md_tests
     options = md_tests.download_test_data()
     folder = options.scratch_dir
     

{md_visualization → megadetector/visualization}/visualize_db.py

@@ -28,10 +28,9 @@ from multiprocessing.pool import ThreadPool
 from multiprocessing.pool import Pool
 from tqdm import tqdm
 
-from md_utils.write_html_image_list import write_html_image_list
-from data_management.cct_json_utils import IndexedJsonDb
-
-import md_visualization.visualization_utils as vis_utils
+from megadetector.utils.write_html_image_list import write_html_image_list
+from megadetector.data_management.cct_json_utils import IndexedJsonDb
+from megadetector.visualization import visualization_utils as vis_utils
 
 
 #%% Settings

{md_visualization → megadetector/visualization}/visualize_detector_output.py

@@ -14,18 +14,17 @@ import json
 import os
 import random
 import sys
+
 from multiprocessing.pool import ThreadPool
 from multiprocessing.pool import Pool
-from typing import List
 from functools import partial
-
 from tqdm import tqdm
 
-from data_management.annotations.annotation_constants import detector_bbox_category_id_to_name
-from md_visualization import visualization_utils as vis_utils
-from md_utils.ct_utils import get_max_conf
-from md_utils import write_html_image_list
-from detection.run_detector import get_typical_confidence_threshold_from_results
+from megadetector.data_management.annotations.annotation_constants import detector_bbox_category_id_to_name
+from megadetector.visualization import visualization_utils as vis_utils
+from megadetector.utils.ct_utils import get_max_conf
+from megadetector.utils import write_html_image_list
+from megadetector.detection.run_detector import get_typical_confidence_threshold_from_results
 
 
 #%% Constants
@@ -355,7 +354,7 @@ def main():
         html_output_file=args.html_output_file)
 
     if args.html_output_file is not None and args.open_html_output_file:
-        from md_utils.path_utils import open_file
+        from megadetector.utils.path_utils import open_file
         open_file(args.html_output_file)
 
 if __name__ == '__main__':
@@ -402,5 +401,5 @@ if False:
                               parallelize_rendering_n_cores,
                               parallelize_rendering_with_threads)
     
-    from md_utils.path_utils import open_file
-    open_file(html_output_file)
+    from megadetector.utils.path_utils import open_file
+    open_file(html_output_file)

{megadetector-5.0.10.dist-info → megadetector-5.0.12.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: megadetector
-Version: 5.0.10
+Version: 5.0.12
 Summary: MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.
 Author-email: Your friendly neighborhood MegaDetector team <cameratraps@lila.science>
 Maintainer-email: Your friendly neighborhood MegaDetector team <cameratraps@lila.science>
@@ -28,7 +28,7 @@ Project-URL: Homepage, https://github.com/agentmorris/MegaDetector
 Project-URL: Documentation, https://megadetector.readthedocs.io
 Project-URL: Bug Reports, https://github.com/agentmorris/MegaDetector/issues
 Project-URL: Source, https://github.com/agentmorris/MegaDetector
-Keywords: camera traps,conservation,wildlife,ai
+Keywords: camera traps,conservation,wildlife,ai,megadetector
 Classifier: Development Status :: 3 - Alpha
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python :: 3
@@ -52,9 +52,9 @@ Requires-Dist: ultralytics-yolov5 ==0.1.1
 
 # MegaDetector
 
-This package is a pip-installable version of the support/inference code for [MegaDetector](https://github.com/agentmorris/MegaDetector), an object detection model that helps conservation biologists spend less time doing boring things with camera trap images.  Complete documentation for this Python package is available at [megadetector.readthedocs.io](https://megadetector.readthedocs.io).
+This package is a pip-installable version of the support/inference code for [MegaDetector](https://github.com/agentmorris/MegaDetector/?tab=readme-ov-file#megadetector), an object detection model that helps conservation biologists spend less time doing boring things with camera trap images.  Complete documentation for this Python package is available at [megadetector.readthedocs.io](https://megadetector.readthedocs.io).
 
-If you aren't looking for the Python package specificaly, and you just want to learn more about what MegaDetector is all about, head over to the [MegaDetector repo](https://github.com/agentmorris/MegaDetector).
+If you aren't looking for the Python package specificaly, and you just want to learn more about what MegaDetector is all about, head over to the [MegaDetector repo](https://github.com/agentmorris/MegaDetector/?tab=readme-ov-file#megadetector).
 
 
 ## Reasons you probably aren't looking for this package
@@ -69,7 +69,7 @@ If you are a computer-vision-y person looking to run or fine-tune MegaDetector p
 
 ## Reasons you might want to use this package
 
-If you want to programmatically interact with the postprocessing tools from the MegaDetector repo, or programmatically run MegaDetector in a way that produces [Timelapse](https://saul.cpsc.ucalgary.ca/timelapse)-friendly output (i.e., output in the standard [MegaDetector output format](https://github.com/agentmorris/MegaDetector/tree/main/api/batch_processing#megadetector-batch-output-format)), this package might be for you.
+If you want to programmatically interact with the postprocessing tools from the MegaDetector repo, or programmatically run MegaDetector in a way that produces [Timelapse](https://saul.cpsc.ucalgary.ca/timelapse)-friendly output (i.e., output in the standard [MegaDetector output format](https://github.com/agentmorris/MegaDetector/tree/main/megadetector/api/batch_processing#megadetector-batch-output-format)), this package might be for you.
 
 Although even if that describes you, you <i>still</i> might be better off cloning the MegaDetector repo.  Pip-installability requires that some dependencies be newer than what was available at the time MDv5 was trained, so results are <i>very slightly</i> different than results produced in the "official" environment.  These differences <i>probably</i> don't matter much, but they have not been formally characterized.
 
@@ -83,7 +83,7 @@ MegaDetector model weights aren't downloaded at pip-install time, but they will
 
 ## Package reference
 
-See <megadetector.readthedocs.io>.
+See [megadetector.readthedocs.io](https://megadetector.readthedocs.io).
 
 
 ## Examples of things you can do with this package
@@ -91,9 +91,9 @@ See <megadetector.readthedocs.io>.
 ### Run MegaDetector on one image and count the number of detections
 
 ```
-from md_utils import url_utils
-from md_visualization import visualization_utils as vis_utils
-from detection import run_detector
+from megadetector.utils import url_utils
+from megadetector.visualization import visualization_utils as vis_utils
+from megadetector.detection import run_detector
 
 # This is the image at the bottom of this page, it has one animal in it
 image_url = 'https://github.com/agentmorris/MegaDetector/raw/main/images/orinoquia-thumb-web.jpg'
@@ -113,8 +113,9 @@ print('Found {} detections above threshold'.format(len(detections_above_threshol
 ### Run MegaDetector on a folder of images
 
 ```
-from detection.run_detector_batch import load_and_run_detector_batch,write_results_to_file
-from md_utils import path_utils
+from megadetector.detection.run_detector_batch import \
+    load_and_run_detector_batch,write_results_to_file
+from megadetector.utils import path_utils
 import os
 
 # Pick a folder to run MD on recursively, and an output file

megadetector-5.0.12.dist-info/RECORD

@@ -0,0 +1,199 @@
+megadetector/api/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+megadetector/api/batch_processing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+megadetector/api/batch_processing/api_core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+megadetector/api/batch_processing/api_core/server.py,sha256=BNqM5EK29B0haCW7rdeOzVqcCJDziZiD0Etc1mPs56c,11668
+megadetector/api/batch_processing/api_core/server_api_config.py,sha256=G8X5wgqEXPrWWQpgDI9ua-JktiUgy9mOpEltXSIazLQ,3318
+megadetector/api/batch_processing/api_core/server_app_config.py,sha256=tQCFsFv0wJCegHfnu-Za3okdXwEd4U522hiM0YGNkMY,1860
+megadetector/api/batch_processing/api_core/server_batch_job_manager.py,sha256=K7fMFBJA8Z1SkA4eBM-nymcq7VQjwZ6ZRaNnNKFlat8,10324
+megadetector/api/batch_processing/api_core/server_job_status_table.py,sha256=3fJrdyeoVLGbbbdKy7cAVL_ZHbCmCQ2o5D26jBBQRJo,6239
+megadetector/api/batch_processing/api_core/server_orchestration.py,sha256=LYHABzhOvP0NrM1VIjI6Vwb95YZ5xjQ52mUJW8oIOQ0,17003
+megadetector/api/batch_processing/api_core/server_utils.py,sha256=oFusP1E29op5DN1nEaR-jQZgRExqMDdzmRL6BHj8EDk,3314
+megadetector/api/batch_processing/api_core/batch_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+megadetector/api/batch_processing/api_core/batch_service/score.py,sha256=_hjUBIe0s9wmpmQwwDg-fd7tJMCn8735zJcgF15mTFo,17354
+megadetector/api/batch_processing/api_core_support/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+megadetector/api/batch_processing/api_core_support/aggregate_results_manually.py,sha256=pPLRVb54kMzcndiRQx0JGna3v9cSX__hBc_7PZ8NFEU,2274
+megadetector/api/batch_processing/api_support/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+megadetector/api/batch_processing/api_support/summarize_daily_activity.py,sha256=5H3DyXtdIW5uCp09Fbu9Tdf0hgfNKYnzv7v8Q7CPsDc,5382
+megadetector/api/batch_processing/data_preparation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+megadetector/api/batch_processing/integration/digiKam/setup.py,sha256=7P1X3JYrBDXmLUeLRrzxNfDkL5lo-pY8nXsp9Cz8rOI,203
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