mcp-sqlite-memory-bank 1.2.4__py3-none-any.whl → 1.3.0__py3-none-any.whl

mcp_sqlite_memory_bank/semantic.py

@@ -0,0 +1,386 @@
+"""
+Semantic search functionality for SQLite Memory Bank using sentence-transformers.
+
+This module provides vector embeddings and semantic similarity search capabilities
+to enhance the memory bank's knowledge discovery features.
+
+Author: Robert Meisner
+"""
+
+import json
+import logging
+from typing import List, Dict, Any, Optional, Tuple
+import numpy as np
+from functools import lru_cache
+
+# Optional imports with graceful fallback
+try:
+    from sentence_transformers import SentenceTransformer, util
+    SENTENCE_TRANSFORMERS_AVAILABLE = True
+except ImportError:
+    SENTENCE_TRANSFORMERS_AVAILABLE = False
+    SentenceTransformer = None
+    util = None
+    logging.warning("sentence-transformers not available. Install with: pip install sentence-transformers")
+
+try:
+    import torch
+    TORCH_AVAILABLE = True
+except ImportError:
+    TORCH_AVAILABLE = False
+    torch = None
+    logging.warning("torch not available. Install with: pip install torch")
+
+from .types import ToolResponse, ValidationError, DatabaseError
+
+
+class SemanticSearchEngine:
+    """
+    Handles semantic search using sentence-transformers.
+    
+    Features:
+    - Vector embeddings for text content
+    - Semantic similarity search
+    - Hybrid search combining semantic + keyword matching
+    - Caching for performance
+    """
+    
+    def __init__(self, model_name: str = "all-MiniLM-L6-v2"):
+        """Initialize the semantic search engine."""
+        self.model_name = model_name
+        self._model = None
+        self._embedding_cache = {}
+        
+        if not SENTENCE_TRANSFORMERS_AVAILABLE:
+            raise ValueError("sentence-transformers is not available. Please install with: pip install sentence-transformers")
+    
+    @property 
+    def model(self):
+        """Lazy load the sentence transformer model."""
+        if self._model is None:
+            if not SENTENCE_TRANSFORMERS_AVAILABLE or SentenceTransformer is None:
+                raise ValueError("sentence-transformers is not available")
+            try:
+                self._model = SentenceTransformer(self.model_name)
+                logging.info(f"Loaded semantic search model: {self.model_name}")
+            except Exception as e:
+                raise DatabaseError(f"Failed to load semantic search model {self.model_name}: {e}")
+        return self._model
+    
+    def get_embedding_dimensions(self) -> Optional[int]:
+        """Get the embedding dimension size for the current model."""
+        return self.model.get_sentence_embedding_dimension()
+    
+    def generate_embedding(self, text: str) -> List[float]:
+        """
+        Generate embedding for a single text.
+        
+        Args:
+            text: Text to embed
+            
+        Returns:
+            List of floats representing the embedding vector
+        """
+        if not text or not text.strip():
+            raise ValidationError("Text cannot be empty for embedding generation")
+        
+        # Check cache first
+        cache_key = f"{self.model_name}:{hash(text)}"
+        if cache_key in self._embedding_cache:
+            return self._embedding_cache[cache_key]
+        
+        try:
+            # Generate embedding
+            embedding = self.model.encode([text], convert_to_tensor=False)[0]
+            embedding_list = embedding.tolist()
+            
+            # Cache for future use
+            self._embedding_cache[cache_key] = embedding_list
+            
+            return embedding_list
+        except Exception as e:
+            raise DatabaseError(f"Failed to generate embedding: {e}")
+    
+    def generate_embeddings_batch(self, texts: List[str]) -> List[List[float]]:
+        """
+        Generate embeddings for multiple texts efficiently.
+        
+        Args:
+            texts: List of texts to embed
+            
+        Returns:
+            List of embedding vectors
+        """
+        if not texts:
+            return []
+        
+        # Filter out empty texts
+        valid_texts = [text for text in texts if text and text.strip()]
+        if not valid_texts:
+            raise ValidationError("No valid texts provided for embedding generation")
+        
+        try:
+            embeddings = self.model.encode(valid_texts, convert_to_tensor=False, show_progress_bar=len(valid_texts) > 10)
+            return [emb.tolist() for emb in embeddings]
+        except Exception as e:
+            raise DatabaseError(f"Failed to generate batch embeddings: {e}")
+    
+    def calculate_similarity(self, embedding1: List[float], embedding2: List[float]) -> float:
+        """
+        Calculate cosine similarity between two embeddings.
+        
+        Args:
+            embedding1: First embedding vector
+            embedding2: Second embedding vector
+            
+        Returns:
+            Similarity score between 0 and 1
+        """
+        if not TORCH_AVAILABLE or torch is None:
+            # Fallback to numpy implementation
+            norm1 = np.linalg.norm(embedding1)
+            norm2 = np.linalg.norm(embedding2)
+            if norm1 == 0 or norm2 == 0:
+                return 0.0
+            similarity = float(np.dot(embedding1, embedding2) / (norm1 * norm2))
+            return max(0.0, min(1.0, similarity))  # Clamp to [0, 1]
+            
+        if not SENTENCE_TRANSFORMERS_AVAILABLE or util is None:
+            # Fallback to numpy implementation
+            norm1 = np.linalg.norm(embedding1)
+            norm2 = np.linalg.norm(embedding2)
+            if norm1 == 0 or norm2 == 0:
+                return 0.0
+            similarity = float(np.dot(embedding1, embedding2) / (norm1 * norm2))
+            return max(0.0, min(1.0, similarity))  # Clamp to [0, 1]
+            
+        try:
+            # Convert to tensors for efficient computation
+            emb1_tensor = torch.tensor(embedding1)
+            emb2_tensor = torch.tensor(embedding2)
+            
+            # Calculate cosine similarity
+            similarity = util.cos_sim(emb1_tensor, emb2_tensor).item()
+            return max(0.0, min(1.0, similarity))  # Clamp to [0, 1]
+        except Exception as e:
+            raise DatabaseError(f"Failed to calculate similarity: {e}")
+    
+    def find_similar_embeddings(self, query_embedding: List[float], 
+                               candidate_embeddings: List[List[float]], 
+                               similarity_threshold: float = 0.5,
+                               top_k: int = 10) -> List[Tuple[int, float]]:
+        """
+        Find the most similar embeddings to a query embedding.
+        
+        Args:
+            query_embedding: Query vector
+            candidate_embeddings: List of candidate vectors
+            similarity_threshold: Minimum similarity score
+            top_k: Maximum number of results
+            
+        Returns:
+            List of (index, similarity_score) tuples, sorted by similarity descending
+        """
+        if not candidate_embeddings:
+            return []
+        
+        # Use efficient torch/sentence-transformers if available
+        if TORCH_AVAILABLE and torch is not None and SENTENCE_TRANSFORMERS_AVAILABLE and util is not None:
+            try:
+                # Convert to tensors
+                query_tensor = torch.tensor(query_embedding).unsqueeze(0)
+                candidate_tensor = torch.tensor(candidate_embeddings)
+                
+                # Calculate similarities
+                similarities = util.cos_sim(query_tensor, candidate_tensor)[0]
+                
+                # Find matches above threshold
+                results = []
+                for idx, sim in enumerate(similarities):
+                    sim_score = sim.item()
+                    if sim_score >= similarity_threshold:
+                        results.append((idx, sim_score))
+                
+                # Sort by similarity descending and limit to top_k
+                results.sort(key=lambda x: x[1], reverse=True)
+                return results[:top_k]
+            except Exception as e:                logging.warning(f"Torch similarity search failed, using numpy fallback: {e}")
+        
+        # Fallback to numpy implementation
+        results = []
+        for idx, candidate_emb in enumerate(candidate_embeddings):
+            similarity = self.calculate_similarity(query_embedding, candidate_emb)
+            if similarity >= similarity_threshold:
+                results.append((idx, similarity))
+        
+        # Sort by similarity descending and limit to top_k
+        results.sort(key=lambda x: x[1], reverse=True)
+        return results[:top_k]
+    
+    def semantic_search(self, query: str, content_data: List[Dict[str, Any]], 
+                       embedding_column: str = "embedding",
+                       content_columns: Optional[List[str]] = None,
+                       similarity_threshold: float = 0.5,
+                       top_k: int = 10) -> List[Dict[str, Any]]:
+        """
+        Perform semantic search on content data.
+        
+        Args:
+            query: Natural language search query
+            content_data: List of rows with embeddings and content
+            embedding_column: Column name containing embeddings
+            content_columns: Columns to search in (for highlighting)
+            similarity_threshold: Minimum similarity score
+            top_k: Maximum number of results
+            
+        Returns:
+            List of search results with similarity scores
+        """
+        if not query.strip():
+            raise ValidationError("Search query cannot be empty")
+        
+        if not content_data:
+            return []
+        
+        try:
+            # Generate query embedding
+            query_embedding = self.generate_embedding(query)
+            
+            # Extract embeddings from content data
+            candidate_embeddings = []
+            valid_indices = []
+            
+            for idx, row in enumerate(content_data):
+                if embedding_column in row and row[embedding_column]:
+                    try:
+                        # Parse embedding from JSON string or use directly if already a list
+                        embedding = row[embedding_column]
+                        if isinstance(embedding, str):
+                            embedding = json.loads(embedding)
+                        
+                        candidate_embeddings.append(embedding)
+                        valid_indices.append(idx)
+                    except (json.JSONDecodeError, TypeError) as e:
+                        logging.warning(f"Invalid embedding data in row {idx}: {e}")
+                        continue
+            
+            if not candidate_embeddings:
+                return []
+            
+            # Find similar embeddings
+            similar_indices = self.find_similar_embeddings(
+                query_embedding, candidate_embeddings, 
+                similarity_threshold, top_k
+            )
+            
+            # Build results
+            results = []
+            for candidate_idx, similarity_score in similar_indices:
+                original_idx = valid_indices[candidate_idx]
+                row = content_data[original_idx].copy()
+                
+                # Add similarity score
+                row['similarity_score'] = round(similarity_score, 3)
+                
+                # Add matched content highlighting if specified
+                if content_columns:
+                    matched_content = []
+                    for col in content_columns:
+                        if col in row and row[col] and query.lower() in str(row[col]).lower():
+                            matched_content.append(f"{col}: {row[col]}")
+                    if matched_content:
+                        row['matched_content'] = matched_content
+                
+                results.append(row)
+            
+            return results
+            
+        except Exception as e:
+            raise DatabaseError(f"Semantic search failed: {e}")
+    
+    def hybrid_search(self, query: str, content_data: List[Dict[str, Any]],
+                     text_columns: Optional[List[str]] = None,
+                     embedding_column: str = "embedding",
+                     semantic_weight: float = 0.7,
+                     text_weight: float = 0.3,
+                     top_k: int = 10) -> List[Dict[str, Any]]:
+        """
+        Combine semantic search with keyword matching for better results.
+        
+        Args:
+            query: Search query
+            content_data: Content to search
+            text_columns: Columns to perform text search on
+            embedding_column: Column containing embeddings
+            semantic_weight: Weight for semantic similarity (0-1)
+            text_weight: Weight for text matching (0-1)
+            top_k: Maximum results
+            
+        Returns:
+            Ranked search results
+        """
+        if not content_data:
+            return []
+        
+        # Normalize weights
+        total_weight = semantic_weight + text_weight
+        if total_weight > 0:
+            semantic_weight /= total_weight
+            text_weight /= total_weight
+        
+        # Get semantic search results
+        semantic_results = self.semantic_search(
+            query, content_data, embedding_column, 
+            similarity_threshold=0.3, top_k=top_k * 2  # Get more for reranking
+        )
+        
+        # Create result map for reranking
+        result_map = {id(result): result for result in semantic_results}
+        
+        # Add text matching scores
+        query_lower = query.lower()
+        for result in semantic_results:
+            text_score = 0.0
+            
+            if text_columns:
+                for col in text_columns:
+                    if col in result and result[col]:
+                        content = str(result[col]).lower()
+                        if query_lower in content:
+                            # Simple frequency-based text scoring
+                            text_score += content.count(query_lower) / len(content.split())
+            
+            # Combine scores
+            semantic_score = result.get('similarity_score', 0.0)
+            combined_score = (semantic_score * semantic_weight) + (text_score * text_weight)
+            result['combined_score'] = round(combined_score, 3)
+            result['text_score'] = round(text_score, 3)
+        
+        # Sort by combined score
+        semantic_results.sort(key=lambda x: x.get('combined_score', 0), reverse=True)
+        
+        return semantic_results[:top_k]
+    
+    def clear_cache(self):
+        """Clear the embedding cache."""
+        self._embedding_cache.clear()
+        logging.info("Semantic search cache cleared")
+
+
+# Global instance
+_semantic_engine: Optional[SemanticSearchEngine] = None
+
+
+def get_semantic_engine(model_name: str = "all-MiniLM-L6-v2") -> SemanticSearchEngine:
+    """Get or create the global semantic search engine."""
+    global _semantic_engine
+    
+    if _semantic_engine is None or _semantic_engine.model_name != model_name:
+        _semantic_engine = SemanticSearchEngine(model_name)
+    
+    return _semantic_engine
+
+
+def is_semantic_search_available() -> bool:
+    """Check if semantic search is available."""
+    return SENTENCE_TRANSFORMERS_AVAILABLE