mat3ra-esse 2025.5.17.post2__py3-none-any.whl → 2025.6.14.post0__py3-none-any.whl
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- mat3ra/esse/data/examples.py +1 -1
- mat3ra/esse/data/schemas.py +1 -1
- mat3ra/esse/models/apse/file/applications/espresso/7.2/pw_x.py +6 -6
- mat3ra/esse/models/apse/materials/builders/slab/pymatgen/parameters.py +3 -3
- mat3ra/esse/models/core/primitive/array_of_3_integers.py +13 -0
- mat3ra/esse/models/core/reusable/coordinate_conditions/__init__.py +29 -1
- mat3ra/esse/models/core/reusable/energy.py +2 -2
- mat3ra/esse/models/element.py +6 -6
- mat3ra/esse/models/material/__init__.py +14 -14
- mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/selector_parameters.py +1 -1
- mat3ra/esse/models/material/reusable/slab/termination.py +1 -1
- mat3ra/esse/models/material/reusable/slab_configuration_with_termination.py +1 -1
- mat3ra/esse/models/material/reusable/stack/slab_in_stack.py +1 -1
- mat3ra/esse/models/materials_category/defects/two_dimensional/grain_boundary_plane/configuration.py +2 -2
- mat3ra/esse/models/materials_category/multi_material/interfaces/configuration.py +1 -1
- mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/ideal_crystal.py +530 -0
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +1143 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/three_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/three_dimensional/supercell_matrix_3d.py +27 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/miller_indices.py +16 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/supercell_matrix_2d.py +25 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/termination.py +144 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.py +13 -0
- mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/crystal.py +530 -0
- mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/void.py +32 -0
- mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +551 -0
- mat3ra/esse/models/materials_category_components/entities/core/zero_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/core/zero_dimensional/atom.py +134 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/repetitions.py +25 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +544 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +541 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +542 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers.py +683 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.py +683 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.py +687 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.py +545 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_unit_cell.py +1130 -0
- mat3ra/esse/models/materials_category_components/operations/core/combinations/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/operations/core/combinations/merge.py +996 -0
- mat3ra/esse/models/materials_category_components/operations/core/combinations/stack.py +968 -0
- mat3ra/esse/models/materials_category_components/operations/core/combinations/stack_component.py +967 -0
- mat3ra/esse/models/materials_category_components/operations/core/modifications/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/operations/core/modifications/repeat.py +27 -0
- mat3ra/esse/models/materials_category_components/operations/core/modifications/strain.py +19 -0
- mat3ra/esse/models/properties_directory/derived_properties.py +11 -11
- mat3ra/esse/models/properties_directory/non_scalar/average_potential_profile.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/band_structure.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/density_of_states.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +50 -50
- mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/electron_affinity.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/fermi_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/formation_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/ionization_potential.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/surface_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/total_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +2 -2
- mat3ra/esse/models/properties_directory/structural/basis/__init__.py +2 -2
- mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
- mat3ra/esse/models/properties_directory/workflow/convergence/ionic.py +2 -2
- {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/METADATA +1 -1
- {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/RECORD +78 -39
- {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/WHEEL +1 -1
- {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/licenses/LICENSE.md +0 -0
- {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/top_level.txt +0 -0
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# generated by datamodel-codegen:
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# filename: materials_category_components/operations/core/modifications/repeat.json
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# version: 0.28.5
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from __future__ import annotations
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from typing import List, Optional
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from pydantic import BaseModel, Field, RootModel
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class ArrayOf3IntegerElementsSchema(RootModel[List[int]]):
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root: List[int] = Field(..., title="array of 3 integer elements schema")
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class RepeatSchema(BaseModel):
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matrix: Optional[List[ArrayOf3IntegerElementsSchema]] = Field(
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default_factory=lambda: [
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ArrayOf3IntegerElementsSchema.model_validate(v) for v in [[1, 0, 0], [0, 1, 0], [0, 0, 1]]
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],
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max_length=3,
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min_length=3,
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title="Supercell Matrix 3D Schema",
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)
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"""
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3x3 matrix of integers for transforming a unit cell into a supercell
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"""
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# generated by datamodel-codegen:
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# filename: materials_category_components/operations/core/modifications/strain.json
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from pydantic import BaseModel, Field, RootModel
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class ArrayOf3NumberElementsSchema(RootModel[List[float]]):
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root: List[float] = Field(..., title="array of 3 number elements schema")
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class StrainSchema(BaseModel):
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matrix: Optional[List[ArrayOf3NumberElementsSchema]] = Field(
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None, max_length=3, min_length=3, title="matrix 3x3 schema"
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)
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class Name52(Enum):
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density = "density"
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class Units28(Enum):
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class DensitySchema(BaseModel):
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name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
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units: Optional[Units28] = None
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class Units29(Enum):
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angstrom = "angstrom"
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class ScalarSchema(BaseModel):
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class Name229(Enum):
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class ScalarSchema28(BaseModel):
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class ScalarSchema29(BaseModel):
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class Name231(Enum):
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class ScalarSchema30(BaseModel):
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class ScalarSchema31(BaseModel):
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class Name233(Enum):
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class ScalarSchema32(BaseModel):
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class Name235(Enum):
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class ScalarSchema34(BaseModel):
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class Name236(Enum):
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class ScalarSchema35(BaseModel):
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value: float
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class Name237(Enum):
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hartree_fock = "hartree_fock"
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class ScalarSchema36(BaseModel):
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value: float
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class Name238(Enum):
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total_energy_contributions = "total_energy_contributions"
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@@ -146,53 +146,53 @@ class TotalEnergyContributionsSchema(BaseModel):
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"""
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product of temperature and configurational entropy
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"""
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-
harrisFoulkes: Optional[
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"""
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non self-consitent energy based on an input charge density
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"""
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-
oneElectron: Optional[
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oneElectron: Optional[ScalarSchema26] = Field(None, title="scalar schema")
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"""
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kinetic + pseudopotential energy
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"""
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-
hartree: Optional[
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+
hartree: Optional[ScalarSchema27] = Field(None, title="scalar schema")
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"""
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energy due to coulomb potential
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"""
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-
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|
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exchange: Optional[ScalarSchema28] = Field(None, title="scalar schema")
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|
"""
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exchange energy
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"""
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-
exchangeCorrelation: Optional[
|
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+
exchangeCorrelation: Optional[ScalarSchema29] = Field(None, title="scalar schema")
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"""
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exchange and correlation energy per particle
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"""
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-
ewald: Optional[
|
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+
ewald: Optional[ScalarSchema30] = Field(None, title="scalar schema")
|
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|
"""
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|
summation of interaction energies at long length scales due to coloumbic interactions
|
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|
"""
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|
-
alphaZ: Optional[
|
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+
alphaZ: Optional[ScalarSchema31] = Field(None, title="scalar schema")
|
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|
"""
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|
divergent electrostatic ion interaction in compensating electron gas
|
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|
"""
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|
-
atomicEnergy: Optional[
|
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|
+
atomicEnergy: Optional[ScalarSchema32] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
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|
kinetic energy of wavefunctions in the atomic limit
|
|
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|
"""
|
|
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|
-
eigenvalues: Optional[
|
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|
+
eigenvalues: Optional[ScalarSchema33] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
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|
sum of one electron energies of kinetic, electrostatic, and exchange correlation
|
|
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|
"""
|
|
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|
-
PAWDoubleCounting2: Optional[
|
|
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|
+
PAWDoubleCounting2: Optional[ScalarSchema34] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
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|
double counting correction 2
|
|
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|
"""
|
|
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|
-
PAWDoubleCounting3: Optional[
|
|
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|
+
PAWDoubleCounting3: Optional[ScalarSchema35] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
191
191
|
double counting correction 3
|
|
192
192
|
"""
|
|
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|
-
hartreeFock: Optional[
|
|
193
|
+
hartreeFock: Optional[ScalarSchema36] = Field(None, title="scalar schema")
|
|
194
194
|
"""
|
|
195
195
|
hartree-fock contribution
|
|
196
196
|
"""
|
|
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|
-
name: Optional[
|
|
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|
+
name: Optional[Name238] = None
|
|
198
198
|
units: Optional[Units] = None
|
|
@@ -38,7 +38,7 @@ class Label17(Enum):
|
|
|
38
38
|
Absorption_coefficient = "Absorption coefficient"
|
|
39
39
|
|
|
40
40
|
|
|
41
|
-
class
|
|
41
|
+
class Units118(Enum):
|
|
42
42
|
field_debye_angstrom__2 = "(debye/angstrom)^2"
|
|
43
43
|
km_mol = "km/mol"
|
|
44
44
|
m_mol = "m/mol"
|
|
@@ -50,7 +50,7 @@ class AxisSchema20(BaseModel):
|
|
|
50
50
|
"""
|
|
51
51
|
label of an axis object
|
|
52
52
|
"""
|
|
53
|
-
units: Optional[
|
|
53
|
+
units: Optional[Units118] = None
|
|
54
54
|
"""
|
|
55
55
|
units for an axis
|
|
56
56
|
"""
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units31(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class ElectronAffinitySchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units31]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units38(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class FermiEnergySchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units38]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units40(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class FormationEnergySchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units40]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units51(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class IonizationPotentialSchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units51]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units69(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class ReactionEnergyBarrierSchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units69]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units106(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class SurfaceEnergySchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units106]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units109(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class TotalEnergySchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units109]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units116(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class ValenceBandOffsetSchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units116]
|
|
34
34
|
value: float
|
|
@@ -24,11 +24,11 @@ class Units(Enum):
|
|
|
24
24
|
eV_atom = "eV/atom"
|
|
25
25
|
|
|
26
26
|
|
|
27
|
-
class
|
|
27
|
+
class Units121(Enum):
|
|
28
28
|
eV_A_2 = "eV/A^2"
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
class ZeroPointEnergySchema(BaseModel):
|
|
32
32
|
name: Name
|
|
33
|
-
units: Union[Units,
|
|
33
|
+
units: Union[Units, Units121]
|
|
34
34
|
value: float
|
|
@@ -131,13 +131,13 @@ class Value(Enum):
|
|
|
131
131
|
Og = "Og"
|
|
132
132
|
|
|
133
133
|
|
|
134
|
-
class
|
|
134
|
+
class Value13(Enum):
|
|
135
135
|
X = "X"
|
|
136
136
|
Vac = "Vac"
|
|
137
137
|
|
|
138
138
|
|
|
139
139
|
class AtomicElementSchema(BaseModel):
|
|
140
|
-
value: Union[Value,
|
|
140
|
+
value: Union[Value, Value13]
|
|
141
141
|
"""
|
|
142
142
|
All elements, including extra elements
|
|
143
143
|
"""
|
|
@@ -37,12 +37,12 @@ class FunctionalGroupPatternSchema(BaseModel):
|
|
|
37
37
|
"""
|
|
38
38
|
|
|
39
39
|
|
|
40
|
-
class
|
|
40
|
+
class Name118(Enum):
|
|
41
41
|
ring = "ring"
|
|
42
42
|
|
|
43
43
|
|
|
44
44
|
class RingPatternSchema(BaseModel):
|
|
45
|
-
name: Optional[
|
|
45
|
+
name: Optional[Name118] = None
|
|
46
46
|
atoms: Optional[List[ObjectWithId]] = Field(None, title="array of ids")
|
|
47
47
|
"""
|
|
48
48
|
array of objects containing integer id each
|
|
@@ -50,12 +50,12 @@ class RingPatternSchema(BaseModel):
|
|
|
50
50
|
isAromatic: Optional[bool] = None
|
|
51
51
|
|
|
52
52
|
|
|
53
|
-
class
|
|
53
|
+
class Name119(Enum):
|
|
54
54
|
special_bond = "special_bond"
|
|
55
55
|
|
|
56
56
|
|
|
57
57
|
class SpecialBondPatternSchema(BaseModel):
|
|
58
|
-
name: Optional[
|
|
58
|
+
name: Optional[Name119] = None
|
|
59
59
|
atoms: Optional[List[ObjectWithId]] = Field(None, title="array of ids")
|
|
60
60
|
"""
|
|
61
61
|
array of objects containing integer id each
|
|
@@ -18,14 +18,14 @@ class Units(Enum):
|
|
|
18
18
|
eV = "eV"
|
|
19
19
|
|
|
20
20
|
|
|
21
|
-
class
|
|
21
|
+
class Units48(Enum):
|
|
22
22
|
eV = "eV"
|
|
23
23
|
Ry = "Ry"
|
|
24
24
|
hartree = "hartree"
|
|
25
25
|
|
|
26
26
|
|
|
27
27
|
class Electronic(BaseModel):
|
|
28
|
-
units: Optional[
|
|
28
|
+
units: Optional[Units48] = None
|
|
29
29
|
"""
|
|
30
30
|
units for force tolerance
|
|
31
31
|
"""
|