mat3ra-esse 2025.5.17.post2__py3-none-any.whl → 2025.6.14.post0__py3-none-any.whl

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  1. mat3ra/esse/data/examples.py +1 -1
  2. mat3ra/esse/data/schemas.py +1 -1
  3. mat3ra/esse/models/apse/file/applications/espresso/7.2/pw_x.py +6 -6
  4. mat3ra/esse/models/apse/materials/builders/slab/pymatgen/parameters.py +3 -3
  5. mat3ra/esse/models/core/primitive/array_of_3_integers.py +13 -0
  6. mat3ra/esse/models/core/reusable/coordinate_conditions/__init__.py +29 -1
  7. mat3ra/esse/models/core/reusable/energy.py +2 -2
  8. mat3ra/esse/models/element.py +6 -6
  9. mat3ra/esse/models/material/__init__.py +14 -14
  10. mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/selector_parameters.py +1 -1
  11. mat3ra/esse/models/material/reusable/slab/termination.py +1 -1
  12. mat3ra/esse/models/material/reusable/slab_configuration_with_termination.py +1 -1
  13. mat3ra/esse/models/material/reusable/stack/slab_in_stack.py +1 -1
  14. mat3ra/esse/models/materials_category/defects/two_dimensional/grain_boundary_plane/configuration.py +2 -2
  15. mat3ra/esse/models/materials_category/multi_material/interfaces/configuration.py +1 -1
  16. mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/__init__.py +3 -0
  17. mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/ideal_crystal.py +530 -0
  18. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/__init__.py +3 -0
  19. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +1143 -0
  20. mat3ra/esse/models/materials_category_components/entities/auxiliary/three_dimensional/__init__.py +3 -0
  21. mat3ra/esse/models/materials_category_components/entities/auxiliary/three_dimensional/supercell_matrix_3d.py +27 -0
  22. mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/__init__.py +3 -0
  23. mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/miller_indices.py +16 -0
  24. mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/supercell_matrix_2d.py +25 -0
  25. mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/termination.py +144 -0
  26. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/__init__.py +3 -0
  27. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.py +13 -0
  28. mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/__init__.py +3 -0
  29. mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/crystal.py +530 -0
  30. mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/void.py +32 -0
  31. mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/__init__.py +3 -0
  32. mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +551 -0
  33. mat3ra/esse/models/materials_category_components/entities/core/zero_dimensional/__init__.py +3 -0
  34. mat3ra/esse/models/materials_category_components/entities/core/zero_dimensional/atom.py +134 -0
  35. mat3ra/esse/models/materials_category_components/entities/reusable/__init__.py +3 -0
  36. mat3ra/esse/models/materials_category_components/entities/reusable/repetitions.py +25 -0
  37. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/__init__.py +3 -0
  38. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +544 -0
  39. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +541 -0
  40. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +542 -0
  41. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/__init__.py +3 -0
  42. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers.py +683 -0
  43. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.py +683 -0
  44. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.py +687 -0
  45. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.py +545 -0
  46. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_unit_cell.py +1130 -0
  47. mat3ra/esse/models/materials_category_components/operations/core/combinations/__init__.py +3 -0
  48. mat3ra/esse/models/materials_category_components/operations/core/combinations/merge.py +996 -0
  49. mat3ra/esse/models/materials_category_components/operations/core/combinations/stack.py +968 -0
  50. mat3ra/esse/models/materials_category_components/operations/core/combinations/stack_component.py +967 -0
  51. mat3ra/esse/models/materials_category_components/operations/core/modifications/__init__.py +3 -0
  52. mat3ra/esse/models/materials_category_components/operations/core/modifications/repeat.py +27 -0
  53. mat3ra/esse/models/materials_category_components/operations/core/modifications/strain.py +19 -0
  54. mat3ra/esse/models/properties_directory/derived_properties.py +11 -11
  55. mat3ra/esse/models/properties_directory/non_scalar/average_potential_profile.py +2 -2
  56. mat3ra/esse/models/properties_directory/non_scalar/band_structure.py +2 -2
  57. mat3ra/esse/models/properties_directory/non_scalar/density_of_states.py +2 -2
  58. mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +2 -2
  59. mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +2 -2
  60. mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +50 -50
  61. mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +2 -2
  62. mat3ra/esse/models/properties_directory/scalar/electron_affinity.py +2 -2
  63. mat3ra/esse/models/properties_directory/scalar/fermi_energy.py +2 -2
  64. mat3ra/esse/models/properties_directory/scalar/formation_energy.py +2 -2
  65. mat3ra/esse/models/properties_directory/scalar/ionization_potential.py +2 -2
  66. mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +2 -2
  67. mat3ra/esse/models/properties_directory/scalar/surface_energy.py +2 -2
  68. mat3ra/esse/models/properties_directory/scalar/total_energy.py +2 -2
  69. mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +2 -2
  70. mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +2 -2
  71. mat3ra/esse/models/properties_directory/structural/basis/__init__.py +2 -2
  72. mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
  73. mat3ra/esse/models/properties_directory/workflow/convergence/ionic.py +2 -2
  74. {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/METADATA +1 -1
  75. {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/RECORD +78 -39
  76. {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/WHEEL +1 -1
  77. {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/licenses/LICENSE.md +0 -0
  78. {mat3ra_esse-2025.5.17.post2.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,1130 @@
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+ # generated by datamodel-codegen:
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+ # filename: materials_category_components/entities/reusable/two_dimensional/slab_unit_cell.json
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+ # version: 0.28.5
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+
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+ from __future__ import annotations
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+
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+ from enum import Enum
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+ from typing import Any, Dict, List, Literal, Optional, Union
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+
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+ from pydantic import BaseModel, Field, RootModel, confloat, conint, constr
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+
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+
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+ class ChemicalElements(Enum):
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+ H = "H"
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+ He = "He"
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+ Li = "Li"
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+ Be = "Be"
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+ B = "B"
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+ C = "C"
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+ N = "N"
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+ O = "O"
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+ F = "F"
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+ Ne = "Ne"
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+ Na = "Na"
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+ Mg = "Mg"
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+ Al = "Al"
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+ Si = "Si"
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+ P = "P"
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+ S = "S"
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+ Cl = "Cl"
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+ Ar = "Ar"
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+ K = "K"
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+ Ca = "Ca"
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+ Sc = "Sc"
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+ Ti = "Ti"
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+ V = "V"
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+ Cr = "Cr"
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+ Mn = "Mn"
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+ Fe = "Fe"
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+ Co = "Co"
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+ Ni = "Ni"
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+ Cu = "Cu"
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+ Zn = "Zn"
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+ Ga = "Ga"
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+ Ge = "Ge"
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+ As = "As"
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+ Se = "Se"
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+ Br = "Br"
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+ Kr = "Kr"
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+ Rb = "Rb"
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+ Sr = "Sr"
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+ Y = "Y"
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+ Zr = "Zr"
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+ Nb = "Nb"
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+ Mo = "Mo"
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+ Tc = "Tc"
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+ Ru = "Ru"
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+ Rh = "Rh"
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+ Pd = "Pd"
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+ Ag = "Ag"
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+ Cd = "Cd"
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+ In = "In"
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+ Sn = "Sn"
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+ Sb = "Sb"
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+ Te = "Te"
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+ I = "I"
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+ Xe = "Xe"
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+ Cs = "Cs"
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+ Ba = "Ba"
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+ La = "La"
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+ Ce = "Ce"
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+ Pr = "Pr"
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+ Nd = "Nd"
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+ Pm = "Pm"
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+ Sm = "Sm"
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+ Eu = "Eu"
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+ Gd = "Gd"
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+ Tb = "Tb"
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+ Dy = "Dy"
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+ Ho = "Ho"
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+ Er = "Er"
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+ Tm = "Tm"
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+ Yb = "Yb"
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+ Lu = "Lu"
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+ Hf = "Hf"
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+ Ta = "Ta"
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+ W = "W"
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+ Re = "Re"
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+ Os = "Os"
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+ Ir = "Ir"
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+ Pt = "Pt"
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+ Au = "Au"
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+ Hg = "Hg"
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+ Tl = "Tl"
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+ Pb = "Pb"
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+ Bi = "Bi"
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+ Po = "Po"
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+ At = "At"
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+ Rn = "Rn"
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+ Fr = "Fr"
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+ Ra = "Ra"
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+ Ac = "Ac"
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+ Th = "Th"
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+ Pa = "Pa"
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+ U = "U"
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+ Np = "Np"
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+ Pu = "Pu"
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+ Am = "Am"
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+ Cm = "Cm"
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+ Bk = "Bk"
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+ Cf = "Cf"
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+ Es = "Es"
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+ Fm = "Fm"
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+ Md = "Md"
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+ No = "No"
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+ Lr = "Lr"
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+ Rf = "Rf"
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+ Db = "Db"
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+ Sg = "Sg"
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+ Bh = "Bh"
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+ Hs = "Hs"
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+ Mt = "Mt"
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+ Ds = "Ds"
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+ Rg = "Rg"
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+ Cn = "Cn"
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+ Nh = "Nh"
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+ Fl = "Fl"
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+ Mc = "Mc"
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+ Lv = "Lv"
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+ Ts = "Ts"
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+ Og = "Og"
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+
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+
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+ class TerminationSchema(BaseModel):
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+ chemical_elements: Union[ChemicalElements, constr(pattern=r"^([A-Z][a-z]?[0-9]*)+$")] = Field(
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+ ..., title="Chemical Elements"
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+ )
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+ """
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+ Chemical elements at the termination. Can be a single element (e.g. 'Si') or a compound (e.g. 'SiO')
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+ """
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+ space_group_symmetry_label: str = Field(..., title="Space Group Symmetry Label")
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+ """
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+ Space group symmetry designation for the termination
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+ """
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+
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+
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+ class Value(Enum):
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+ H = "H"
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+ He = "He"
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+ Li = "Li"
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+ Be = "Be"
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+ B = "B"
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+ C = "C"
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+ N = "N"
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+ O = "O"
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+ F = "F"
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+ Ne = "Ne"
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+ Na = "Na"
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+ Mg = "Mg"
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+ Al = "Al"
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+ Si = "Si"
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+ P = "P"
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+ S = "S"
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+ Cl = "Cl"
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+ Ar = "Ar"
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+ K = "K"
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+ Ca = "Ca"
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+ Sc = "Sc"
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+ Ti = "Ti"
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+ V = "V"
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+ Cr = "Cr"
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+ Mn = "Mn"
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+ Fe = "Fe"
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+ Co = "Co"
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+ Ni = "Ni"
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+ Cu = "Cu"
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+ Zn = "Zn"
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+ Ga = "Ga"
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+ Ge = "Ge"
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+ As = "As"
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+ Se = "Se"
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+ Br = "Br"
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+ Kr = "Kr"
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+ Rb = "Rb"
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+ Sr = "Sr"
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+ Y = "Y"
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+ Zr = "Zr"
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+ Nb = "Nb"
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+ Mo = "Mo"
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+ Tc = "Tc"
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+ Ru = "Ru"
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+ Rh = "Rh"
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+ Pd = "Pd"
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+ Ag = "Ag"
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+ Cd = "Cd"
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+ In = "In"
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+ Sn = "Sn"
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+ Sb = "Sb"
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+ Te = "Te"
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+ I = "I"
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+ Xe = "Xe"
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+ Cs = "Cs"
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+ Ba = "Ba"
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+ La = "La"
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+ Ce = "Ce"
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+ Pr = "Pr"
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+ Nd = "Nd"
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+ Pm = "Pm"
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+ Sm = "Sm"
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+ Eu = "Eu"
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+ Gd = "Gd"
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+ Tb = "Tb"
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+ Dy = "Dy"
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+ Ho = "Ho"
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+ Er = "Er"
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+ Tm = "Tm"
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+ Yb = "Yb"
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+ Lu = "Lu"
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+ Hf = "Hf"
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+ Ta = "Ta"
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+ W = "W"
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+ Re = "Re"
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+ Os = "Os"
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+ Ir = "Ir"
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+ Pt = "Pt"
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+ Au = "Au"
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+ Hg = "Hg"
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+ Tl = "Tl"
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+ Pb = "Pb"
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+ Bi = "Bi"
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+ Po = "Po"
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+ At = "At"
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+ Rn = "Rn"
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+ Fr = "Fr"
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+ Ra = "Ra"
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+ Ac = "Ac"
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+ Th = "Th"
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+ Pa = "Pa"
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+ U = "U"
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+ Np = "Np"
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+ Pu = "Pu"
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+ Am = "Am"
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+ Cm = "Cm"
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+ Bk = "Bk"
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+ Cf = "Cf"
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+ Es = "Es"
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+ Fm = "Fm"
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+ Md = "Md"
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+ No = "No"
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+ Lr = "Lr"
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+ Rf = "Rf"
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+ Db = "Db"
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+ Sg = "Sg"
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+ Bh = "Bh"
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+ Hs = "Hs"
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+ Mt = "Mt"
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+ Ds = "Ds"
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+ Rg = "Rg"
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+ Cn = "Cn"
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+ Nh = "Nh"
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+ Fl = "Fl"
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+ Mc = "Mc"
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+ Lv = "Lv"
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+ Ts = "Ts"
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+ Og = "Og"
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+
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+
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+ class Value37(Enum):
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+ X = "X"
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+ Vac = "Vac"
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+
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+
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+ class AtomicElementSchema(BaseModel):
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+ value: Union[Value, Value37]
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+ """
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+ All elements, including extra elements
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+ """
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+ id: int
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+ """
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+ integer id of this entry
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+ """
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+
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+
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+ class AtomicCoordinateSchema(BaseModel):
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+ value: List[float] = Field(..., max_length=3, min_length=3, title="coordinate 3d schema")
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+ """
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+ value of this entry
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+ """
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+ id: int
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+ """
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+ integer id of this entry
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+ """
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+
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+
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+ class BasisUnitsEnum(Enum):
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+ crystal = "crystal"
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+ cartesian = "cartesian"
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+
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+
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+ class AtomicLabelSchema(BaseModel):
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+ value: Union[Union[int, str, float], conint(ge=1, le=9)]
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+ """
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+ value of this entry
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+ """
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+ id: int
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+ """
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+ integer id of this entry
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+ """
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+
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+
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+ class BasisSchema(BaseModel):
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+ elements: List[AtomicElementSchema] = Field(..., title="atomic elements schema")
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+ """
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+ atomic elements schema
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+ """
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+ coordinates: List[AtomicCoordinateSchema] = Field(..., title="atomic coordinates schema")
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+ """
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+ atomic coordinates schema
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+ """
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+ units: Optional[BasisUnitsEnum] = Field("crystal", title="basis units enum")
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+ labels: Optional[List[AtomicLabelSchema]] = Field(None, title="atomic labels schema")
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+ """
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+ atomic labels schema
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+ """
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+
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+
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+ class LatticeVectorsUnitsEnum(Enum):
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+ angstrom = "angstrom"
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+ bohr = "bohr"
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+
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+
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+ class LatticeVectorsSchema(BaseModel):
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+ a: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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+ b: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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+ c: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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+ alat: Optional[float] = 1
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+ """
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+ lattice parameter for fractional coordinates
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+ """
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+ units: Optional[LatticeVectorsUnitsEnum] = Field("angstrom", title="lattice vectors units enum")
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+
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+
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+ class LatticeTypeEnum(Enum):
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+ CUB = "CUB"
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+ BCC = "BCC"
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+ FCC = "FCC"
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+ TET = "TET"
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+ MCL = "MCL"
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+ ORC = "ORC"
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+ ORCC = "ORCC"
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+ ORCF = "ORCF"
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+ ORCI = "ORCI"
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+ HEX = "HEX"
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+ BCT = "BCT"
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+ TRI = "TRI"
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+ MCLC = "MCLC"
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+ RHL = "RHL"
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+
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+
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+ class LatticeUnitsLengthEnum(Enum):
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+ angstrom = "angstrom"
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+ bohr = "bohr"
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+
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+
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+ class LatticeUnitsAngleEnum(Enum):
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+ degree = "degree"
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+ radian = "radian"
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+
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+
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+ class LatticeUnitsSchema(BaseModel):
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+ length: Optional[LatticeUnitsLengthEnum] = Field("angstrom", title="lattice units length enum")
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+ angle: Optional[LatticeUnitsAngleEnum] = Field("degree", title="lattice units angle enum")
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+
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+
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+ class LatticeSchema(BaseModel):
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+ a: float
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+ """
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+ length of the first lattice vector
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+ """
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+ b: float
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+ """
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+ length of the second lattice vector
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+ """
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+ c: float
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+ """
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+ length of the third lattice vector
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+ """
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+ alpha: float
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+ """
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+ angle between first and second lattice vector
391
+ """
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+ beta: float
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+ """
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+ angle between second and third lattice vector
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+ """
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+ gamma: float
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+ """
398
+ angle between first and third lattice vector
399
+ """
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+ vectors: Optional[LatticeVectorsSchema] = Field(None, title="lattice vectors schema")
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+ type: Optional[LatticeTypeEnum] = Field("TRI", title="lattice type enum")
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+ units: Optional[LatticeUnitsSchema] = Field(
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+ default_factory=lambda: LatticeUnitsSchema.model_validate({"length": "angstrom", "angle": "degree"}),
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+ title="Lattice units schema",
405
+ )
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+
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+
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+ class Name(Enum):
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+ volume = "volume"
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+
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+
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+ class Units(Enum):
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+ angstrom_3 = "angstrom^3"
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+
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+
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+ class VolumeSchema(BaseModel):
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+ name: Literal["0#-datamodel-code-generator-#-object-#-special-#"]
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+ units: Optional[Units] = None
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+ value: float
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+
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+
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+ class Name149(Enum):
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+ density = "density"
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+
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+
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+ class Units78(Enum):
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+ g_cm_3 = "g/cm^3"
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+
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+
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+ class DensitySchema(BaseModel):
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+ name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
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+ units: Optional[Units78] = None
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+ value: float
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+
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+
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+ class Units79(Enum):
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+ angstrom = "angstrom"
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+
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+
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+ class ScalarSchema(BaseModel):
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+ units: Optional[Units79] = None
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+ value: float
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+
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+
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+ class Name150(Enum):
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+ symmetry = "symmetry"
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+
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+
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+ class SymmetrySchema(BaseModel):
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+ pointGroupSymbol: Optional[str] = None
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+ """
452
+ point group symbol in Schoenflies notation
453
+ """
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+ spaceGroupSymbol: Optional[str] = None
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+ """
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+ space group symbol in Hermann–Mauguin notation
457
+ """
458
+ tolerance: Optional[ScalarSchema] = Field(None, title="scalar schema")
459
+ """
460
+ tolerance used for symmetry calculation
461
+ """
462
+ name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
463
+
464
+
465
+ class Name151(Enum):
466
+ elemental_ratio = "elemental_ratio"
467
+
468
+
469
+ class ElementalRatio(BaseModel):
470
+ name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
471
+ value: confloat(ge=0.0, le=1.0)
472
+ element: Optional[str] = None
473
+ """
474
+ the element this ratio is for
475
+ """
476
+
477
+
478
+ class Name152(Enum):
479
+ p_norm = "p-norm"
480
+
481
+
482
+ class PNorm(BaseModel):
483
+ name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
484
+ degree: Optional[int] = None
485
+ """
486
+ degree of the dimensionality of the norm
487
+ """
488
+ value: float
489
+
490
+
491
+ class Name153(Enum):
492
+ inchi = "inchi"
493
+
494
+
495
+ class InChIRepresentationSchema(BaseModel):
496
+ name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
497
+ value: str
498
+
499
+
500
+ class Name154(Enum):
501
+ inchi_key = "inchi_key"
502
+
503
+
504
+ class InChIKeyRepresentationSchema(BaseModel):
505
+ name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
506
+ value: str
507
+
508
+
509
+ class DerivedPropertiesSchema(
510
+ RootModel[
511
+ Union[
512
+ VolumeSchema,
513
+ DensitySchema,
514
+ SymmetrySchema,
515
+ ElementalRatio,
516
+ PNorm,
517
+ InChIRepresentationSchema,
518
+ InChIKeyRepresentationSchema,
519
+ ]
520
+ ]
521
+ ):
522
+ root: Union[
523
+ VolumeSchema,
524
+ DensitySchema,
525
+ SymmetrySchema,
526
+ ElementalRatio,
527
+ PNorm,
528
+ InChIRepresentationSchema,
529
+ InChIKeyRepresentationSchema,
530
+ ] = Field(..., discriminator="name")
531
+
532
+
533
+ class DatabaseSourceSchema(BaseModel):
534
+ id: Union[str, float]
535
+ """
536
+ ID string for the materials uploaded from a third party source inside the third party source. For materialsproject.org an example ID is mp-32
537
+ """
538
+ source: str
539
+ """
540
+ Third party source name, e.g. materials project, 2dmatpedia, ICSD, etc.
541
+ """
542
+ origin: bool
543
+ """
544
+ Deprecated. To be removed. A flag that is true when material is initially imported from a third party * (as opposed to being independently designed from scratch).
545
+ """
546
+ data: Optional[Dict[str, Any]] = None
547
+ """
548
+ Original response from external source.
549
+ """
550
+ doi: Optional[str] = None
551
+ """
552
+ Digital Object Identifier, e.g. 10.1088/0953-8984/25/10/105506
553
+ """
554
+ url: Optional[str] = None
555
+ """
556
+ The URL of the original record, e.g. https://next-gen.materialsproject.org/materials/mp-48; ToDo: update to use URI type per https://json-schema.org/understanding-json-schema/reference/string#resource-identifiers
557
+ """
558
+
559
+
560
+ class FileSourceSchema(BaseModel):
561
+ extension: Optional[str] = None
562
+ """
563
+ file extension
564
+ """
565
+ filename: str
566
+ """
567
+ file name without extension
568
+ """
569
+ text: str
570
+ """
571
+ file content as raw text
572
+ """
573
+ hash: str
574
+ """
575
+ MD5 hash based on file content
576
+ """
577
+
578
+
579
+ class Name155(Enum):
580
+ default = "default"
581
+ atomsTooClose = "atomsTooClose"
582
+ atomsOverlap = "atomsOverlap"
583
+
584
+
585
+ class Severity(Enum):
586
+ info = "info"
587
+ warning = "warning"
588
+ error = "error"
589
+
590
+
591
+ class MaterialConsistencyCheckSchema(BaseModel):
592
+ name: Name155
593
+ """
594
+ Name of the consistency check that is performed, which is listed in an enum.
595
+ """
596
+ key: str
597
+ """
598
+ Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
599
+ """
600
+ severity: Severity
601
+ """
602
+ Severity level of the problem, which is used in UI to differentiate.
603
+ """
604
+ message: str
605
+ """
606
+ Message generated by the consistency check describing the problem.
607
+ """
608
+
609
+
610
+ class CrystalSchema(BaseModel):
611
+ formula: Optional[str] = None
612
+ """
613
+ reduced chemical formula
614
+ """
615
+ unitCellFormula: Optional[str] = None
616
+ """
617
+ chemical formula based on the number of atoms of each element in the supercell
618
+ """
619
+ basis: BasisSchema = Field(..., title="basis schema")
620
+ lattice: LatticeSchema = Field(..., title="lattice schema")
621
+ derivedProperties: Optional[List[DerivedPropertiesSchema]] = Field(None, title="derived properties schema")
622
+ external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
623
+ """
624
+ information about a database source
625
+ """
626
+ src: Optional[FileSourceSchema] = Field(None, title="file source schema")
627
+ """
628
+ file source with the information inside
629
+ """
630
+ scaledHash: Optional[str] = None
631
+ """
632
+ Hash string for a scaled structure with lattice vector a set to 1 (eg. for materials under pressure).
633
+ """
634
+ icsdId: Optional[int] = None
635
+ """
636
+ Corresponding ICSD id of the material
637
+ """
638
+ isNonPeriodic: Optional[bool] = None
639
+ """
640
+ Whether to work in the finite molecular picture (usually with atomic orbital basis)
641
+ """
642
+ consistencyChecks: Optional[List[MaterialConsistencyCheckSchema]] = None
643
+ field_id: Optional[str] = Field(None, alias="_id")
644
+ """
645
+ entity identity
646
+ """
647
+ slug: Optional[str] = None
648
+ """
649
+ entity slug
650
+ """
651
+ systemName: Optional[str] = None
652
+ schemaVersion: Optional[str] = "2022.8.16"
653
+ """
654
+ entity's schema version. Used to distinct between different schemas.
655
+ """
656
+ name: Optional[str] = None
657
+ """
658
+ entity name
659
+ """
660
+ isDefault: Optional[bool] = False
661
+ """
662
+ Identifies that entity is defaultable
663
+ """
664
+ metadata: Optional[Dict[str, Any]] = None
665
+
666
+
667
+ class AtomicLayersUniqueRepeatedSchema(BaseModel):
668
+ termination_top: TerminationSchema = Field(..., title="Termination Schema")
669
+ """
670
+ Defines a specific termination of a slab
671
+ """
672
+ number_of_repetitions: conint(ge=1)
673
+ """
674
+ Number of repetitions of the unique atomic layers
675
+ """
676
+ crystal: CrystalSchema = Field(..., title="Crystal Schema")
677
+ """
678
+ A crystal structure, referencing the base material schema
679
+ """
680
+ miller_indices: Optional[List[int]] = Field([0, 0, 1], max_length=3, min_length=3, title="Miller Indices Schema")
681
+ """
682
+ Miller indices [h, k, l] defining crystallographic planes
683
+ """
684
+ use_conventional_cell: Optional[bool] = True
685
+ """
686
+ Use the conventional cell for the crystal structure
687
+ """
688
+
689
+
690
+ class AxisEnum(Enum):
691
+ x = "x"
692
+ y = "y"
693
+ z = "z"
694
+
695
+
696
+ class Value38(Enum):
697
+ H = "H"
698
+ He = "He"
699
+ Li = "Li"
700
+ Be = "Be"
701
+ B = "B"
702
+ C = "C"
703
+ N = "N"
704
+ O = "O"
705
+ F = "F"
706
+ Ne = "Ne"
707
+ Na = "Na"
708
+ Mg = "Mg"
709
+ Al = "Al"
710
+ Si = "Si"
711
+ P = "P"
712
+ S = "S"
713
+ Cl = "Cl"
714
+ Ar = "Ar"
715
+ K = "K"
716
+ Ca = "Ca"
717
+ Sc = "Sc"
718
+ Ti = "Ti"
719
+ V = "V"
720
+ Cr = "Cr"
721
+ Mn = "Mn"
722
+ Fe = "Fe"
723
+ Co = "Co"
724
+ Ni = "Ni"
725
+ Cu = "Cu"
726
+ Zn = "Zn"
727
+ Ga = "Ga"
728
+ Ge = "Ge"
729
+ As = "As"
730
+ Se = "Se"
731
+ Br = "Br"
732
+ Kr = "Kr"
733
+ Rb = "Rb"
734
+ Sr = "Sr"
735
+ Y = "Y"
736
+ Zr = "Zr"
737
+ Nb = "Nb"
738
+ Mo = "Mo"
739
+ Tc = "Tc"
740
+ Ru = "Ru"
741
+ Rh = "Rh"
742
+ Pd = "Pd"
743
+ Ag = "Ag"
744
+ Cd = "Cd"
745
+ In = "In"
746
+ Sn = "Sn"
747
+ Sb = "Sb"
748
+ Te = "Te"
749
+ I = "I"
750
+ Xe = "Xe"
751
+ Cs = "Cs"
752
+ Ba = "Ba"
753
+ La = "La"
754
+ Ce = "Ce"
755
+ Pr = "Pr"
756
+ Nd = "Nd"
757
+ Pm = "Pm"
758
+ Sm = "Sm"
759
+ Eu = "Eu"
760
+ Gd = "Gd"
761
+ Tb = "Tb"
762
+ Dy = "Dy"
763
+ Ho = "Ho"
764
+ Er = "Er"
765
+ Tm = "Tm"
766
+ Yb = "Yb"
767
+ Lu = "Lu"
768
+ Hf = "Hf"
769
+ Ta = "Ta"
770
+ W = "W"
771
+ Re = "Re"
772
+ Os = "Os"
773
+ Ir = "Ir"
774
+ Pt = "Pt"
775
+ Au = "Au"
776
+ Hg = "Hg"
777
+ Tl = "Tl"
778
+ Pb = "Pb"
779
+ Bi = "Bi"
780
+ Po = "Po"
781
+ At = "At"
782
+ Rn = "Rn"
783
+ Fr = "Fr"
784
+ Ra = "Ra"
785
+ Ac = "Ac"
786
+ Th = "Th"
787
+ Pa = "Pa"
788
+ U = "U"
789
+ Np = "Np"
790
+ Pu = "Pu"
791
+ Am = "Am"
792
+ Cm = "Cm"
793
+ Bk = "Bk"
794
+ Cf = "Cf"
795
+ Es = "Es"
796
+ Fm = "Fm"
797
+ Md = "Md"
798
+ No = "No"
799
+ Lr = "Lr"
800
+ Rf = "Rf"
801
+ Db = "Db"
802
+ Sg = "Sg"
803
+ Bh = "Bh"
804
+ Hs = "Hs"
805
+ Mt = "Mt"
806
+ Ds = "Ds"
807
+ Rg = "Rg"
808
+ Cn = "Cn"
809
+ Nh = "Nh"
810
+ Fl = "Fl"
811
+ Mc = "Mc"
812
+ Lv = "Lv"
813
+ Ts = "Ts"
814
+ Og = "Og"
815
+
816
+
817
+ class Value39(Enum):
818
+ X = "X"
819
+ Vac = "Vac"
820
+
821
+
822
+ class AtomicElementSchema15(BaseModel):
823
+ value: Union[Value38, Value39]
824
+ """
825
+ All elements, including extra elements
826
+ """
827
+ id: int
828
+ """
829
+ integer id of this entry
830
+ """
831
+
832
+
833
+ class BasisSchema13(BaseModel):
834
+ elements: List[AtomicElementSchema15] = Field(..., title="atomic elements schema")
835
+ """
836
+ atomic elements schema
837
+ """
838
+ coordinates: List[AtomicCoordinateSchema] = Field(..., title="atomic coordinates schema")
839
+ """
840
+ atomic coordinates schema
841
+ """
842
+ units: Optional[BasisUnitsEnum] = Field("crystal", title="basis units enum")
843
+ labels: Optional[List[AtomicLabelSchema]] = Field(None, title="atomic labels schema")
844
+ """
845
+ atomic labels schema
846
+ """
847
+
848
+
849
+ class LatticeVectorsSchema13(BaseModel):
850
+ a: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
851
+ b: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
852
+ c: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
853
+ alat: Optional[float] = 1
854
+ """
855
+ lattice parameter for fractional coordinates
856
+ """
857
+ units: Optional[LatticeVectorsUnitsEnum] = Field("angstrom", title="lattice vectors units enum")
858
+
859
+
860
+ class LatticeUnitsSchema14(BaseModel):
861
+ length: Optional[LatticeUnitsLengthEnum] = Field("angstrom", title="lattice units length enum")
862
+ angle: Optional[LatticeUnitsAngleEnum] = Field("degree", title="lattice units angle enum")
863
+
864
+
865
+ class LatticeSchema13(BaseModel):
866
+ a: float
867
+ """
868
+ length of the first lattice vector
869
+ """
870
+ b: float
871
+ """
872
+ length of the second lattice vector
873
+ """
874
+ c: float
875
+ """
876
+ length of the third lattice vector
877
+ """
878
+ alpha: float
879
+ """
880
+ angle between first and second lattice vector
881
+ """
882
+ beta: float
883
+ """
884
+ angle between second and third lattice vector
885
+ """
886
+ gamma: float
887
+ """
888
+ angle between first and third lattice vector
889
+ """
890
+ vectors: Optional[LatticeVectorsSchema13] = Field(None, title="lattice vectors schema")
891
+ type: Optional[LatticeTypeEnum] = Field("TRI", title="lattice type enum")
892
+ units: Optional[LatticeUnitsSchema14] = Field(
893
+ default_factory=lambda: LatticeUnitsSchema14.model_validate({"length": "angstrom", "angle": "degree"}),
894
+ title="Lattice units schema",
895
+ )
896
+
897
+
898
+ class Name156(Enum):
899
+ volume = "volume"
900
+
901
+
902
+ class Units80(Enum):
903
+ angstrom_3 = "angstrom^3"
904
+
905
+
906
+ class VolumeSchema13(BaseModel):
907
+ name: Literal["0#-datamodel-code-generator-#-object-#-special-#"]
908
+ units: Optional[Units80] = None
909
+ value: float
910
+
911
+
912
+ class Name157(Enum):
913
+ density = "density"
914
+
915
+
916
+ class Units81(Enum):
917
+ g_cm_3 = "g/cm^3"
918
+
919
+
920
+ class DensitySchema14(BaseModel):
921
+ name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
922
+ units: Optional[Units81] = None
923
+ value: float
924
+
925
+
926
+ class Units82(Enum):
927
+ angstrom = "angstrom"
928
+
929
+
930
+ class ScalarSchema15(BaseModel):
931
+ units: Optional[Units82] = None
932
+ value: float
933
+
934
+
935
+ class Name158(Enum):
936
+ symmetry = "symmetry"
937
+
938
+
939
+ class SymmetrySchema13(BaseModel):
940
+ pointGroupSymbol: Optional[str] = None
941
+ """
942
+ point group symbol in Schoenflies notation
943
+ """
944
+ spaceGroupSymbol: Optional[str] = None
945
+ """
946
+ space group symbol in Hermann–Mauguin notation
947
+ """
948
+ tolerance: Optional[ScalarSchema15] = Field(None, title="scalar schema")
949
+ """
950
+ tolerance used for symmetry calculation
951
+ """
952
+ name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
953
+
954
+
955
+ class Name159(Enum):
956
+ elemental_ratio = "elemental_ratio"
957
+
958
+
959
+ class ElementalRatio14(BaseModel):
960
+ name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
961
+ value: confloat(ge=0.0, le=1.0)
962
+ element: Optional[str] = None
963
+ """
964
+ the element this ratio is for
965
+ """
966
+
967
+
968
+ class Name160(Enum):
969
+ p_norm = "p-norm"
970
+
971
+
972
+ class PNorm14(BaseModel):
973
+ name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
974
+ degree: Optional[int] = None
975
+ """
976
+ degree of the dimensionality of the norm
977
+ """
978
+ value: float
979
+
980
+
981
+ class Name161(Enum):
982
+ inchi = "inchi"
983
+
984
+
985
+ class InChIRepresentationSchema14(BaseModel):
986
+ name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
987
+ value: str
988
+
989
+
990
+ class Name162(Enum):
991
+ inchi_key = "inchi_key"
992
+
993
+
994
+ class InChIKeyRepresentationSchema14(BaseModel):
995
+ name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
996
+ value: str
997
+
998
+
999
+ class DerivedPropertiesSchema14(
1000
+ RootModel[
1001
+ Union[
1002
+ VolumeSchema13,
1003
+ DensitySchema14,
1004
+ SymmetrySchema13,
1005
+ ElementalRatio14,
1006
+ PNorm14,
1007
+ InChIRepresentationSchema14,
1008
+ InChIKeyRepresentationSchema14,
1009
+ ]
1010
+ ]
1011
+ ):
1012
+ root: Union[
1013
+ VolumeSchema13,
1014
+ DensitySchema14,
1015
+ SymmetrySchema13,
1016
+ ElementalRatio14,
1017
+ PNorm14,
1018
+ InChIRepresentationSchema14,
1019
+ InChIKeyRepresentationSchema14,
1020
+ ] = Field(..., discriminator="name")
1021
+
1022
+
1023
+ class Name163(Enum):
1024
+ default = "default"
1025
+ atomsTooClose = "atomsTooClose"
1026
+ atomsOverlap = "atomsOverlap"
1027
+
1028
+
1029
+ class MaterialConsistencyCheckSchema13(BaseModel):
1030
+ name: Name163
1031
+ """
1032
+ Name of the consistency check that is performed, which is listed in an enum.
1033
+ """
1034
+ key: str
1035
+ """
1036
+ Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
1037
+ """
1038
+ severity: Severity
1039
+ """
1040
+ Severity level of the problem, which is used in UI to differentiate.
1041
+ """
1042
+ message: str
1043
+ """
1044
+ Message generated by the consistency check describing the problem.
1045
+ """
1046
+
1047
+
1048
+ class CrystalSchema10(BaseModel):
1049
+ formula: Optional[str] = None
1050
+ """
1051
+ reduced chemical formula
1052
+ """
1053
+ unitCellFormula: Optional[str] = None
1054
+ """
1055
+ chemical formula based on the number of atoms of each element in the supercell
1056
+ """
1057
+ basis: BasisSchema13 = Field(..., title="basis schema")
1058
+ lattice: LatticeSchema13 = Field(..., title="lattice schema")
1059
+ derivedProperties: Optional[List[DerivedPropertiesSchema14]] = Field(None, title="derived properties schema")
1060
+ external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
1061
+ """
1062
+ information about a database source
1063
+ """
1064
+ src: Optional[FileSourceSchema] = Field(None, title="file source schema")
1065
+ """
1066
+ file source with the information inside
1067
+ """
1068
+ scaledHash: Optional[str] = None
1069
+ """
1070
+ Hash string for a scaled structure with lattice vector a set to 1 (eg. for materials under pressure).
1071
+ """
1072
+ icsdId: Optional[int] = None
1073
+ """
1074
+ Corresponding ICSD id of the material
1075
+ """
1076
+ isNonPeriodic: Optional[bool] = None
1077
+ """
1078
+ Whether to work in the finite molecular picture (usually with atomic orbital basis)
1079
+ """
1080
+ consistencyChecks: Optional[List[MaterialConsistencyCheckSchema13]] = None
1081
+ field_id: Optional[str] = Field(None, alias="_id")
1082
+ """
1083
+ entity identity
1084
+ """
1085
+ slug: Optional[str] = None
1086
+ """
1087
+ entity slug
1088
+ """
1089
+ systemName: Optional[str] = None
1090
+ schemaVersion: Optional[str] = "2022.8.16"
1091
+ """
1092
+ entity's schema version. Used to distinct between different schemas.
1093
+ """
1094
+ name: Optional[str] = None
1095
+ """
1096
+ entity name
1097
+ """
1098
+ isDefault: Optional[bool] = False
1099
+ """
1100
+ Identifies that entity is defaultable
1101
+ """
1102
+ metadata: Optional[Dict[str, Any]] = None
1103
+
1104
+
1105
+ class VacuumConfigurationSchema(BaseModel):
1106
+ direction: AxisEnum = Field(..., title="Axis Enum")
1107
+ """
1108
+ Enum for axis types
1109
+ """
1110
+ size: Optional[confloat(ge=0.0)] = 10
1111
+ """
1112
+ Size of the vacuum slab in angstroms
1113
+ """
1114
+ crystal: CrystalSchema10 = Field(..., title="Crystal Schema")
1115
+ """
1116
+ A crystal structure, referencing the base material schema
1117
+ """
1118
+
1119
+
1120
+ class SlabUnitCellSchema(BaseModel):
1121
+ stack_components: List[Union[AtomicLayersUniqueRepeatedSchema, VacuumConfigurationSchema]] = Field(
1122
+ ..., min_length=2
1123
+ )
1124
+ """
1125
+ Components of the slab unit cell: repeated unique atomic layers and vacuum
1126
+ """
1127
+ direction: AxisEnum = Field(..., title="Axis Enum")
1128
+ """
1129
+ Enum for axis types
1130
+ """