mat3ra-esse 2024.12.19.post0__py3-none-any.whl → 2025.1.27.post0__py3-none-any.whl
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- mat3ra/esse/data/examples.py +1 -1
- mat3ra/esse/data/properties.py +2 -2
- mat3ra/esse/data/schemas.py +1 -1
- mat3ra/esse/models/core/reference/__init__.py +1 -1
- mat3ra/esse/models/core/reference/modeling/__init__.py +1 -1
- mat3ra/esse/models/core/reference/modeling/exabyte.py +1 -1
- mat3ra/esse/models/element.py +4 -4
- mat3ra/esse/models/in_memory_entity/base.py +1 -34
- mat3ra/esse/models/in_memory_entity/defaultable.py +1 -34
- mat3ra/esse/models/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.py +61 -0
- mat3ra/esse/models/in_memory_entity/named.py +1 -34
- mat3ra/esse/models/in_memory_entity/named_defaultable.py +1 -34
- mat3ra/esse/models/in_memory_entity/named_defaultable_has_metadata.py +1 -34
- mat3ra/esse/models/in_memory_entity/named_defaultable_runtime_items.py +0 -33
- mat3ra/esse/models/job/__init__.py +3 -617
- mat3ra/esse/models/job/base.py +1 -33
- mat3ra/esse/models/material/__init__.py +14 -14
- mat3ra/esse/models/material/consistency_check.py +40 -0
- mat3ra/esse/models/project.py +0 -33
- mat3ra/esse/models/properties_directory/derived_properties.py +6 -6
- mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +26 -26
- mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
- mat3ra/esse/models/property/base/__init__.py +0 -32
- mat3ra/esse/models/property/meta/__init__.py +0 -32
- mat3ra/esse/models/property/raw/__init__.py +0 -32
- mat3ra/esse/models/software/application.py +1 -34
- mat3ra/esse/models/software/executable.py +0 -33
- mat3ra/esse/models/software/flavor.py +0 -33
- mat3ra/esse/models/software/template.py +0 -33
- mat3ra/esse/models/software_directory/ml/unit/execution/__init__.py +3 -488
- mat3ra/esse/models/software_directory/ml/unit/execution/evaluate/cross_validate.py +0 -92
- mat3ra/esse/models/software_directory/ml/unit/execution/initialize.py +0 -92
- mat3ra/esse/models/software_directory/ml/unit/execution/score.py +0 -92
- mat3ra/esse/models/software_directory/ml/unit/execution/train.py +0 -92
- mat3ra/esse/models/software_directory/ml/unit/processing/__init__.py +0 -52
- mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/__init__.py +0 -32
- mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/manipulation.py +0 -32
- mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.py +0 -32
- mat3ra/esse/models/software_directory/ml/unit/processing/feature_selection/__init__.py +0 -32
- mat3ra/esse/models/software_directory/ml/unit/processing/feature_selection/filter_based.py +0 -32
- mat3ra/esse/models/software_directory/modeling/deepmd.py +1 -33
- mat3ra/esse/models/software_directory/modeling/nwchem.py +1 -33
- mat3ra/esse/models/software_directory/modeling/unit/execution.py +0 -92
- mat3ra/esse/models/software_directory/modeling/vasp.py +1 -33
- mat3ra/esse/models/software_directory/scripting/jupyter_lab.py +1 -33
- mat3ra/esse/models/software_directory/scripting/python.py +0 -32
- mat3ra/esse/models/software_directory/scripting/shell.py +1 -33
- mat3ra/esse/models/software_directory/scripting/unit/execution.py +0 -92
- mat3ra/esse/models/system/_material.py +1 -1
- mat3ra/esse/models/system/_parent_job.py +1 -1
- mat3ra/esse/models/system/_project.py +1 -1
- mat3ra/esse/models/system/consistency_check.py +1 -7
- mat3ra/esse/models/system/creator.py +1 -1
- mat3ra/esse/models/system/creator_account.py +1 -1
- mat3ra/esse/models/system/description.py +1 -1
- mat3ra/esse/models/system/entity_reference.py +1 -1
- mat3ra/esse/models/system/has_consistency_check.py +39 -0
- mat3ra/esse/models/system/in_set.py +1 -1
- mat3ra/esse/models/system/job_extended.py +1 -1
- mat3ra/esse/models/system/owner.py +1 -1
- mat3ra/esse/models/workflow/__init__.py +2 -596
- mat3ra/esse/models/workflow/base.py +0 -33
- mat3ra/esse/models/workflow/subworkflow/__init__.py +1 -284
- mat3ra/esse/models/workflow/subworkflow/unit.py +0 -212
- mat3ra/esse/models/workflow/unit/__init__.py +0 -252
- mat3ra/esse/models/workflow/unit/assertion.py +0 -32
- mat3ra/esse/models/workflow/unit/assignment.py +0 -32
- mat3ra/esse/models/workflow/unit/base.py +0 -32
- mat3ra/esse/models/workflow/unit/condition.py +0 -32
- mat3ra/esse/models/workflow/unit/execution.py +0 -92
- mat3ra/esse/models/workflow/unit/io/__init__.py +0 -32
- mat3ra/esse/models/workflow/unit/map.py +0 -32
- mat3ra/esse/models/workflow/unit/processing.py +0 -32
- mat3ra/esse/models/workflow/unit/reduce.py +0 -32
- mat3ra/esse/models/workflow/unit/subworkflow.py +0 -32
- {mat3ra_esse-2024.12.19.post0.dist-info → mat3ra_esse-2025.1.27.post0.dist-info}/METADATA +9 -9
- {mat3ra_esse-2024.12.19.post0.dist-info → mat3ra_esse-2025.1.27.post0.dist-info}/RECORD +80 -77
- {mat3ra_esse-2024.12.19.post0.dist-info → mat3ra_esse-2025.1.27.post0.dist-info}/WHEEL +1 -1
- {mat3ra_esse-2024.12.19.post0.dist-info → mat3ra_esse-2025.1.27.post0.dist-info}/LICENSE.md +0 -0
- {mat3ra_esse-2024.12.19.post0.dist-info → mat3ra_esse-2025.1.27.post0.dist-info}/top_level.txt +0 -0
mat3ra/esse/data/examples.py
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EXAMPLES = json.loads(json.dumps([{'data': {'method': {'data': {'pseudo': []}, 'subtype': 'us', 'type': 'pseudopotential'}, 'subtype': 'gga', 'type': 'dft'}, 'path': 'model'}, {'data': {'_id': 'FPjAaKfuYAL7tiHbm', 'createdAt': '2018-11-19 06:41:46.877Z', 'creator': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'User', 'slug': 'exadmin'}, 'exabyteId': 'qKtTzu9utCo6ac4n7', 'hash': 'f4fd707d2e47c15f8d786cf159040954', 'isDefault': True, 'name': 'workflow', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'properties': ['band_structure'], 'schemaVersion': '0.2.0', 'slug': 'workflow', 'subworkflows': [{'_id': 'LCthJ6E2QabYCZqf4', 'application': {'name': 'espresso', 'shortName': 'qe', 'summary': 'Quantum Espresso', 'version': '5.1.1', 'hasAdvancedComputeOptions': True}, 'model': {'method': {'data': {'pseudo': []}, 'subtype': 'us', 'type': 'pseudopotential'}, 'subtype': 'gga', 'type': 'dft'}, 'name': 'Band Structure', 'properties': ['band_structure'], 'units': [{'application': {'name': 'espresso', 'shortName': 'qe', 'summary': 'Quantum Espresso', 'version': '5.1.1', 'hasAdvancedComputeOptions': True}, 'compute': None, 'executable': {'advancedComputeOptions': True, 'applicationId': ['eaJepm4AWfqpaCw59'], 'isDefault': True, 'monitors': [{'name': 'standard_output'}], 'name': 'pw.x', 'postProcessors': [], 'preProcessors': [], 'results': [{'name': 'atomic_forces'}]}, 'flavor': {'executableId': '4987JFJ3kKbwvFSG7', 'input': [{'templateId': 'dJ7HYz5pQ4AuN5qc9'}], 'name': 'pw_scf'}, 'flowchartId': 'execution', 'head': True, 'input': [{'content': 'K_POINTS automatic\n2 2 2 0 0 0', 'name': 'pw_scf.in'}], 'monitors': [{'name': 'scf_accuracy'}, {'name': 'standard_output'}], 'name': 'execution', 'next': 'pw-bands', 'postProcessors': [], 'preProcessors': [], 'results': [{'name': 'harris_foulkes_estimate'}], 'status': 'idle', 'type': 'execution'}]}], 'tags': ['workflow'], 'units': [{'_id': 'LCthJ6E2QabYCZqf4', 'flowchartId': '05c362dc27ff1bb98d16fd60', 'type': 'subworkflow', 'name': 'subworkflow unit'}]}, 'path': 'workflow'}, {'data': {'_id': 'tvFyik5699io8khi8', 'chargeRate': {'rate': 2}, 'createdAt': '2019-01-03T23:52:26.809Z', 'creator': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'User', 'slug': 'exadmin'}, 'description': 'Default project', 'gid': 3000000, 'isDefault': True, 'name': 'Default', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'schemaVersion': '0.2.0', 'slug': 'exadmin-default', 'tags': [], 'updatedAt': '2019-01-04T00:12:37.316Z'}, 'path': 'project'}, {'data': {'_id': 'FPjAaKfuYAL7tiHbm', '_material': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Material', 'slug': 'silicon-fcc'}, '_project': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Project', 'slug': 'project-default'}, 'compute': {'arguments': {'nband': 1, 'npools': 1, 'ntg': 1}, 'cluster': {'fqdn': 'master-1-staging.exabyte.io', 'jid': '1234.master-1-staging.exabyte.io'}, 'email': 'demo@exabyte.io', 'errors': [{'domain': 'rupy', 'message': 'File Not Found: /home/demo/data/project1/job-123/job-config.json', 'reason': 'FileNotFound'}], 'excludeFilesPattern': '^.*.txt$', 'maxCPU': 36, 'nodes': 1, 'notify': 'abe', 'ppn': 1, 'queue': 'OF', 'timeLimit': '00:05:00'}, 'createdAt': '2018-11-19 06:41:46.877Z', 'creator': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'User', 'slug': 'exadmin'}, 'name': 'job', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'schemaVersion': '0.2.0', 'slug': 'job', 'status': 'pre-submission', 'workflow': {'_id': 'FPjAaKfuYAL7tiHbm', 'createdAt': '2018-11-19 06:41:46.877Z', 'creator': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'User', 'slug': 'exadmin'}, 'exabyteId': 'qKtTzu9utCo6ac4n7', 'hash': 'f4fd707d2e47c15f8d786cf159040954', 'isDefault': True, 'name': 'workflow', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'properties': ['band_structure'], 'schemaVersion': '0.2.0', 'slug': 'workflow', 'subworkflows': [{'_id': 'LCthJ6E2QabYCZqf4', 'application': {'name': 'espresso', 'shortName': 'qe', 'summary': 'Quantum Espresso', 'version': '5.1.1', 'hasAdvancedComputeOptions': True}, 'model': {'method': {'data': {'pseudo': []}, 'subtype': 'us', 'type': 'pseudopotential'}, 'subtype': 'gga', 'type': 'dft'}, 'name': 'Band Structure', 'properties': ['band_structure'], 'units': [{'application': {'name': 'espresso', 'shortName': 'qe', 'summary': 'Quantum Espresso', 'version': '5.1.1', 'hasAdvancedComputeOptions': True}, 'compute': None, 'executable': {'advancedComputeOptions': True, 'applicationId': ['eaJepm4AWfqpaCw59'], 'isDefault': True, 'monitors': [{'name': 'standard_output'}], 'name': 'pw.x', 'postProcessors': [], 'preProcessors': [], 'results': [{'name': 'atomic_forces'}]}, 'flavor': {'executableId': '4987JFJ3kKbwvFSG7', 'input': [{'templateId': 'dJ7HYz5pQ4AuN5qc9'}], 'name': 'pw_scf'}, 'flowchartId': 'execution', 'head': True, 'input': [{'content': 'K_POINTS automatic\n2 2 2 0 0 0', 'name': 'pw_scf.in'}], 'monitors': [{'name': 'scf_accuracy'}, {'name': 'standard_output'}], 'name': 'execution', 'next': 'pw-bands', 'postProcessors': [], 'preProcessors': [], 'results': [{'name': 'harris_foulkes_estimate'}], 'status': 'idle', 'type': 'execution'}]}], 'tags': ['workflow'], 'units': [{'_id': 'LCthJ6E2QabYCZqf4', 'flowchartId': '05c362dc27ff1bb98d16fd60', 'type': 'subworkflow', 'name': 'subworkflow unit'}]}}, 'path': 'job'}, {'data': {'_id': 'LCthJ6E2QabYCZqf3', 'basis': {'coordinates': [{'id': 1, 'value': [0.0, 0.0, 0.0]}, {'id': 2, 'value': [0.25, 0.25, 0.25]}], 'elements': [{'id': 1, 'value': 'Si'}, {'id': 2, 'value': 'Si'}], 'name': 'basis', 'units': 'crystal'}, 'createdAt': '2016-04-03T05:25:37.430Z', 'creator': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'User', 'slug': 'exadmin'}, 'derivedProperties': [{'name': 'volume', 'units': 'angstrom^3', 'value': 131.1}, {'name': 'density', 'units': 'g/cm^3', 'value': 2.33}, {'name': 'symmetry', 'spaceGroupSymbol': 'Fd-3m', 'tolerance': {'units': 'angstrom', 'value': 0.3}}, {'degree': 10, 'name': 'p-norm', 'value': 0.71}, {'element': 'Si', 'name': 'elemental_ratio', 'value': 0.71}, {'name': 'inchi', 'value': ''}, {'name': 'inchi_key', 'value': ''}], 'exabyteId': 'RKiswuxHKkF3uvLyA', 'formula': 'Si', 'hash': '4ac3fa057e3530628eb1295c77110eaa', 'isDefault': False, 'isNonPeriodic': False, 'lattice': {'name': 'lattice', 'vectors': {'a': [5.0, 0.000121312, 0.000131415], 'alat': 1.0, 'b': [0.000121312, 5.0, 0.000121314], 'c': [0.000121313, 0.000121312, 5.0], 'units': 'angstrom'}, 'a': 5.14, 'alpha': 90.0, 'b': 5.14, 'beta': 90.0, 'c': 5.14, 'gamma': 90.0, 'type': 'CUB', 'units': {'angle': 'degree', 'length': 'angstrom'}}, 'name': 'Silicon FCC', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'scaledHash': '5bd4eb168e3530628eb1295d88221cbb', 'schemaVersion': '0.2.0', 'slug': 'silicon-fcc', 'unitCellFormula': 'Si2', 'updatedAt': '2016-04-04T17:58:42.867Z'}, 'path': 'material'}, {'data': {'data': {'pseudo': []}, 'subtype': 'us', 'type': 'pseudopotential'}, 'path': 'method'}, {'data': {'properties': [{'name': 'atomic_radius', 'value': 4}, {'name': 'electronegativity', 'value': 1.1}, {'name': 'ionization_potential', 'value': 7.7}], 'symbol': 'Si'}, 'path': 'element'}, {'data': {'_id': 'nDAavgjrT5ezwFgod', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'title': 'My Calculation'}, 'path': 'core/reference'}, {'data': {'xDataArray': [0, 1, 2], 'yDataSeries': [[0, 0.5, 1], [0, 2.5, 5]]}, 'path': 'core/abstract/2d_data'}, {'data': [[1, 0, 0], [0, 1, 0], [0, 0, 1]], 'path': 'core/abstract/3d_tensor'}, {'data': {'dimensions': [2, 2, 2], 'shifts': [0, 0, 0]}, 'path': 'core/abstract/3d_grid'}, {'data': {'a': [5.0, 0.0, 0.0], 'b': [0.0, 5.0, 0.0], 'c': [0.0, 0.0, 5.0]}, 'path': 'core/abstract/3d_vector_basis'}, {'data': [0.0, 5.5, 0.0], 'path': 'core/abstract/point'}, {'data': {'xAxis': {'label': 'kpoint index'}, 'xDataArray': [0, 1, 2], 'yAxis': {'label': 'eigenvalues', 'units': 'eV'}, 'yDataSeries': [[0, 0.5, 1], [0, 2.5, 5]]}, 'path': 'core/abstract/2d_plot'}, {'data': [1.0, 0.0, 0.0], 'path': 'core/abstract/vector'}, {'data': [1.0, 0.0, 0.0], 'path': 'core/primitive/array_of_3_numbers'}, {'data': {'a': 5.14, 'alpha': 90.0, 'b': 5.14, 'beta': 90.0, 'c': 5.14, 'gamma': 90.0}, 'path': 'core/primitive/3d_lattice'}, {'data': [True, False, False], 'path': 'core/primitive/array_of_3_booleans'}, {'data': [[0, 0.5, 1], [0, 2.5, 5]], 'path': 'core/primitive/1d_data_series'}, {'data': {'value': 'example string'}, 'path': 'core/primitive/string'}, {'data': {'label': 'energy', 'units': 'eV'}, 'path': 'core/primitive/axis'}, {'data': [{'id': 1}, {'id': 2}], 'path': 'core/primitive/array_of_ids'}, {'data': {'value': 0.1}, 'path': 'core/primitive/scalar'}, {'data': {'authors': [{'affiliation': 'Exabyte Inc.', 'first': 'John', 'last': 'Doe'}], 'doi': '10.1000/xyz123'}, 'path': 'core/reference/literature'}, {'data': {'_id': 'nDAavgjrT5ezwFgod', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'title': 'My Calculation'}, 'path': 'core/reference/modeling'}, {'data': {'authors': [{'affiliation': 'Exabyte Inc.', 'first': 'John', 'last': 'Doe'}], 'conditions': [{'name': 'pressure', 'scalar': [{'value': '1.2'}, {'value': '3.3'}], 'units': 'kbar'}], 'method': 'DFT', 'references': [{'authors': [{'affiliation': 'Exabyte Inc.', 'first': 'John', 'last': 'Doe'}], 'doi': '10.1000/xyz123'}], 'timestamp': 141182979832, 'title': 'Experiment 1'}, 'path': 'core/reference/experiment'}, {'data': {'affiliation': 'Exabyte Inc.', 'first': 'John', 'last': 'Doe'}, 'path': 'core/reference/literature/name'}, {'data': {'end': '2', 'start': '1'}, 'path': 'core/reference/literature/pages'}, {'data': {'_id': 'nDAavgjrT5ezwFgod', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'title': 'My Calculation'}, 'path': 'core/reference/modeling/exabyte'}, {'data': {'latitude': 24.3423424, 'longitude': 43.234232}, 'path': 'core/reference/experiment/location'}, {'data': {'name': 'pressure', 'scalar': [{'value': '1.2'}, {'value': '3.3'}], 'units': 'kbar'}, 'path': 'core/reference/experiment/condition'}, {'data': {'pathname': '/path/to/file/', 'basename': 'some_file.png', 'filetype': 'image'}, 'path': 'core/reusable/file_metadata'}, {'data': [{'id': 1, 'value': [0, 0, 0]}, {'id': 2, 'value': [0.25, 0.25, 0.25]}], 'path': 'core/reusable/atomic_vectors'}, {'data': {'CONTAINER': 'production-20160630-cluster-001', 'NAME': '/cluster-001-home/jrd101/data/jrd101-default/kernel-train-Cxmkj97aXKZeaRZov/Cxmkj97aXKZeaRZov.json', 'PROVIDER': 'aws', 'REGION': 'us-east-1', 'SIZE': 6582, 'TIMESTAMP': '1614217411'}, 'path': 'core/reusable/object_storage_container_data'}, {'data': {'name': 'zero_point_energy', 'units': 'eV', 'value': -0.0634}, 'path': 'core/reusable/energy'}, {'data': {'kpointConduction': [0, 0, 0], 'kpointValence': [0, 0, 0], 'name': 'band_gap', 'type': 'direct', 'units': 'rydberg', 'value': 0.0947}, 'path': 'core/reusable/band_gap'}, {'data': {'_id': 'K3McGkqXh28HJ775m', 'createdAt': '2018-11-19 06:41:46.877Z', 'creator': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'User', 'slug': 'exadmin'}, 'data': {'name': 'pressure', 'units': 'kbar', 'value': -149.03}, 'group': 'qe:dft:gga:pbe', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'schemaVersion': '0.2.0', 'slug': 'pressure', 'source': {'_id': 'nDAavgjrT5ezwFgod', 'owner': {'_id': 'HtxACY2wX4b2hS8Rv', 'cls': 'Account', 'slug': 'exabyte'}, 'title': 'My Calculation'}}, 'path': 'property/base'}, {'data': {'&CONTROL': {'calculation': 'scf', 'title': '', 'verbosity': 'low', 'restart_mode': 'from_scratch', 'wf_collect': True, 'tstress': True, 'tprnfor': True, 'outdir': '{{ JOB_WORK_DIR }}/outdir', 'wfcdir': '{{ JOB_WORK_DIR }}/outdir', 'prefix': '__prefix__', 'pseudo_dir': '{{ JOB_WORK_DIR }}/pseudo'}, '&SYSTEM': {'ibrav': 0, 'nat': 2, 'ntyp': 2, 'ecutwfc': 40, 'ecutrho': 200, 'occupations': 'smearing', 'degauss': 0.005, 'starting_magnetization': [0.01, 0.02], 'Hubbard_occ': [[1, 1, 0.0], [1, 2, 0.02]]}, '&ELECTRONS': {'diagonalization': 'david', 'diago_david_ndim': 4, 'diago_full_acc': True, 'mixing_beta': 0.3, 'startingwfc': 'atomic+random'}, '&IONS': None, '&CELL': None, 'ATOMIC_SPECIES': {'values': [{'X': 'Cs', 'Mass_X': 132.90543, 'PseudoPot_X': 'Cs.upf'}, {'X': 'Cl', 'Mass_X': 35.4527, 'PseudoPot_X': 'Cl.upf'}]}, 'CELL_PARAMETERS': {'card_option': 'angstrom', 'values': {'v1': [4.324582724, 0.0, 2.496799], 'v2': [1.441527575, 4.077255694, 2.496799], 'v3': [0.0, 0.0, 4.993598]}}, 'K_POINTS': {'card_option': 'automatic', 'values': {'nk1': 2, 'nk2': 2, 'nk3': 2, 'sk1': 0, 'sk2': 0, 'sk3': 0}}}, 'path': '3pse/file/applications/espresso/7.2/pw.x'}, {'data': {'phi': {'nelect': 48, 'phi': 4.73414095269429, 'scf_vbm': -1.6519, 'scf_cbm': -1.6472, 'Ef': -1.97822464, 'scf_gap': 0.0, 'avg_max': 2.7559163126942896, 'scf_dir': False}, 'atoms': {'lattice_mat': [[3.353617811446221, 0.0, 0.0], [0.0, 6.273423021773385, 0.0], [0.0, 0.0, 33.313518]], 'coords': [[0.0, 0.6004615456553349, 0.2002745956304112], [0.5, 0.9651745521229684, 0.205389889617873], [0.0, 0.8600702878546368, 0.2642586539633663], [0.5, 0.3508476059345406, 0.2471701152668883], [0.5, 0.7055702442093444, 0.1414059027438078], [0.0, 0.2147957642231673, 0.1584938427776558]], 'elements': ['Mo', 'Mo', 'Te', 'Te', 'Te', 'Te'], 'abc': [3.35362, 6.27342, 33.31352], 'angles': [90.0, 90.0, 90.0], 'cartesian': False, 'props': ['', '', '', '', '', '']}, 'jid': 'JVASP-677'}, 'path': '3pse/db/nist_jarvis/2024.3.13/db_entry'}, {'data': {'name': 'Methfessel-Paxton smearing', 'path': '/qm/wf/smearing/methfessel-paxton', 'categories': {'tier1': 'qm', 'tier2': 'wf', 'type': 'smearing', 'subtype': 'methfessel-paxton'}}, 'path': 'methods_directory/physical/smearing'}, {'data': {'name': 'PAW Pseudopotential method', 'path': '/qm/wf/psp/paw', 'slug': 'pseudopotential', 'categories': {'tier1': 'qm', 'tier2': 'wf', 'type': 'psp', 'subtype': 'paw'}, 'data': [{'slug': 'pseudopotential', 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mat3ra/esse/data/properties.py
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import json
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PROPERTIES_MANIFEST = json.loads(
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3
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RESULTS = json.loads(
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PROPERTIES_MANIFEST = json.loads(r'''{"convergence_ionic":{"defaults":{"units":"eV"},"schemaId":"properties-directory/workflow/convergence/ionic","isMonitor":true},"convergence_electronic":{"defaults":{"units":"eV"},"schemaId":"properties-directory/workflow/convergence/electronic","isMonitor":true},"pressure":{"defaults":{"units":"kbar"},"schemaId":"properties-directory/scalar/pressure","isResult":true},"total_energy":{"defaults":{"units":"eV"},"schemaId":"properties-directory/scalar/total-energy","isResult":true},"surface_energy":{"defaults":{"units":"eV/A^2"},"schemaId":"properties-directory/scalar/surface-energy","isResult":true},"fermi_energy":{"defaults":{"units":"eV"},"schemaId":"properties-directory/scalar/fermi-energy","isResult":true},"total_force":{"defaults":{"units":"eV/angstrom"},"schemaId":"properties-directory/scalar/total-force","isResult":true},"zero_point_energy":{"defaults":{"units":"eV"},"schemaId":"properties-directory/scalar/zero-point-energy","isResult":true},"reaction_energy_barrier":{"defaults":{"units":"eV"},"schemaId":"properties-directory/scalar/reaction-energy-barrier","isResult":true},"electron_affinity":{"defaults":{"units":"eV"},"schemaId":"properties-directory/scalar/electron-affinity","isResult":true},"ionization_potential":{"defaults":{"units":"eV"},"schemaId":"properties-directory/scalar/ionization-potential","isResult":true},"valence_band_offset":{"defaults":{"units":"eV"},"schemaId":"properties-directory/scalar/valence-band-offset"},"phonon_dos":{"defaults":{"xAxis":{"label":"frequency","units":"cm-1"},"yAxis":{"label":"Phonon DOS","units":"states/cm-1"}},"schemaId":"properties-directory/non-scalar/phonon-dos","isResult":true},"phonon_dispersions":{"defaults":{"xAxis":{"label":"qpoints","units":"crystal"},"yAxis":{"label":"frequency","units":"cm-1"}},"schemaId":"properties-directory/non-scalar/phonon-dispersions","isResult":true},"total_energy_contributions":{"defaults":{"units":"eV"},"schemaId":"properties-directory/non-scalar/total-energy-contributions","isResult":true},"band_gaps":{"types":["direct","indirect"],"defaults":{"units":"eV"},"schemaId":"properties-directory/non-scalar/band-gaps","isResult":true},"stress_tensor":{"defaults":{"units":"kbar"},"schemaId":"properties-directory/non-scalar/stress-tensor","isResult":true},"band_structure":{"defaults":{"xAxis":{"label":"kpoints","units":"crystal"},"yAxis":{"label":"energy","units":"eV"}},"schemaId":"properties-directory/non-scalar/band-structure","isResult":true},"density_of_states":{"defaults":{"xAxis":{"label":"energy","units":"eV"},"yAxis":{"label":"density of states","units":"states/unitcell"}},"schemaId":"properties-directory/non-scalar/density-of-states","isResult":true},"reaction_energy_profile":{"defaults":{"xAxis":{"label":"reaction coordinate"},"yAxis":{"label":"energy","units":"eV"}},"schemaId":"properties-directory/non-scalar/reaction-energy-profile","isResult":true},"potential_profile":{"defaults":{"xAxis":{"label":"z coordinate"},"yAxis":{"label":"energy","units":"eV"}},"schemaId":"properties-directory/non-scalar/potential-profile","isResult":true},"charge_density_profile":{"defaults":{"xAxis":{"label":"z coordinate"},"yAxis":{"label":"charge density","units":"e/A"}},"schemaId":"properties-directory/non-scalar/charge-density-profile","isResult":true},"vibrational_spectrum":{"defaults":{"xAxis":{"label":"wavenumber","units":"cm-1"},"yAxis":{"label":"Absorption coefficient","units":"km/mol"}},"schemaId":"properties-directory/non-scalar/vibrational-spectrum","isResult":true},"file_content":{"schemaId":"properties-directory/non-scalar/file-content","isResult":true},"average_potential_profile":{"defaults":{"xAxis":{"label":"z coordinate","units":"angstrom"},"yAxis":{"label":"energy","units":"eV"}},"schemaId":"properties-directory/non-scalar/average-potential-profile","isResult":true},"dielectric_tensor":{"schemaId":"properties-directory/non-scalar/dielectric-tensor","isResult":true},"basis":{"defaults":{"units":"angstrom"},"schemaId":"properties-directory/structural/basis"},"lattice":{"defaults":{"units":"angstrom"},"schemaId":"properties-directory/structural/lattice"},"atomic_forces":{"defaults":{"units":"eV/angstrom"},"schemaId":"properties-directory/structural/atomic-forces","isResult":true},"atomic_constraints":{"schemaId":"properties-directory/structural/basis/atomic-constraints"},"p-norm":{"schemaId":"properties-directory/structural/p-norm"},"volume":{"defaults":{"units":"angstrom^3"},"schemaId":"properties-directory/structural/volume"},"symmetry":{"defaults":{"units":"angstrom"},"schemaId":"properties-directory/structural/symmetry"},"elemental_ratio":{"schemaId":"properties-directory/structural/elemental-ratio"},"density":{"defaults":{"units":"g/cm^3"},"schemaId":"properties-directory/structural/density"},"magnetic_moments":{"defaults":{"units":"uB"},"schemaId":"properties-directory/structural/magnetic-moments","isResult":true},"bonds":{"defaults":{"units":"angstrom"},"schemaId":"properties-directory/structural/basis/bonds"},"inchi":{"schemaId":"properties-directory/structural/inchi"},"inchi_key":{"schemaId":"properties-directory/structural/inchi-key"},"material":{"schemaId":"material"},"hubbard_u":{"defaults":{"units":"eV"},"schemaId":"properties-directory/non-scalar/hubbard-u","isResult":true},"hubbard_v":{"defaults":{"units":"eV"},"schemaId":"properties-directory/non-scalar/hubbard-v","isResult":true},"hubbard_v_nn":{"defaults":{"units":"eV"},"schemaId":"properties-directory/non-scalar/hubbard-v-nn","isResult":true}}''')
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3
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+
RESULTS = json.loads(r'''["pressure","total_energy","surface_energy","fermi_energy","total_force","zero_point_energy","reaction_energy_barrier","electron_affinity","ionization_potential","phonon_dos","phonon_dispersions","total_energy_contributions","band_gaps","stress_tensor","band_structure","density_of_states","reaction_energy_profile","potential_profile","charge_density_profile","vibrational_spectrum","file_content","average_potential_profile","dielectric_tensor","atomic_forces","magnetic_moments","hubbard_u","hubbard_v","hubbard_v_nn"]''')
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