lamindb 0.77.2__py3-none-any.whl → 1.0rc1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- lamindb/__init__.py +39 -32
- lamindb/_artifact.py +95 -64
- lamindb/_can_curate.py +19 -10
- lamindb/_collection.py +51 -49
- lamindb/_feature.py +9 -9
- lamindb/_finish.py +99 -86
- lamindb/_from_values.py +20 -17
- lamindb/_is_versioned.py +2 -1
- lamindb/_parents.py +23 -16
- lamindb/_query_manager.py +3 -3
- lamindb/_query_set.py +85 -18
- lamindb/_record.py +121 -46
- lamindb/_run.py +3 -3
- lamindb/_save.py +14 -8
- lamindb/{_feature_set.py → _schema.py} +34 -31
- lamindb/_storage.py +2 -1
- lamindb/_transform.py +51 -23
- lamindb/_ulabel.py +17 -8
- lamindb/_view.py +15 -14
- lamindb/base/__init__.py +24 -0
- lamindb/base/fields.py +281 -0
- lamindb/base/ids.py +103 -0
- lamindb/base/types.py +51 -0
- lamindb/base/users.py +30 -0
- lamindb/base/validation.py +67 -0
- lamindb/core/__init__.py +19 -14
- lamindb/core/_context.py +297 -228
- lamindb/core/_data.py +44 -49
- lamindb/core/_describe.py +41 -31
- lamindb/core/_django.py +59 -44
- lamindb/core/_feature_manager.py +192 -168
- lamindb/core/_label_manager.py +22 -22
- lamindb/core/_mapped_collection.py +17 -14
- lamindb/core/_settings.py +1 -12
- lamindb/core/_sync_git.py +56 -9
- lamindb/core/_track_environment.py +1 -1
- lamindb/core/datasets/_core.py +5 -6
- lamindb/core/exceptions.py +0 -7
- lamindb/core/fields.py +1 -1
- lamindb/core/loaders.py +18 -2
- lamindb/core/{schema.py → relations.py} +22 -19
- lamindb/core/storage/_anndata_accessor.py +1 -2
- lamindb/core/storage/_backed_access.py +2 -1
- lamindb/core/storage/_tiledbsoma.py +40 -13
- lamindb/core/storage/objects.py +1 -1
- lamindb/core/storage/paths.py +13 -8
- lamindb/core/subsettings/__init__.py +0 -2
- lamindb/core/types.py +2 -23
- lamindb/core/versioning.py +11 -7
- lamindb/{_curate.py → curators/__init__.py} +700 -57
- lamindb/curators/_spatial.py +528 -0
- lamindb/integrations/_vitessce.py +1 -3
- lamindb/migrations/0052_squashed.py +1261 -0
- lamindb/migrations/0053_alter_featureset_hash_alter_paramvalue_created_by_and_more.py +57 -0
- lamindb/migrations/0054_alter_feature_previous_runs_and_more.py +35 -0
- lamindb/migrations/0055_artifact_type_artifactparamvalue_and_more.py +61 -0
- lamindb/migrations/0056_rename_ulabel_ref_is_name_artifactulabel_label_ref_is_name_and_more.py +22 -0
- lamindb/migrations/0057_link_models_latest_report_and_others.py +356 -0
- lamindb/migrations/0058_artifact__actions_collection__actions.py +22 -0
- lamindb/migrations/0059_alter_artifact__accessor_alter_artifact__hash_type_and_more.py +31 -0
- lamindb/migrations/0060_alter_artifact__actions.py +22 -0
- lamindb/migrations/0061_alter_collection_meta_artifact_alter_run_environment_and_more.py +45 -0
- lamindb/migrations/0062_add_is_latest_field.py +32 -0
- lamindb/migrations/0063_populate_latest_field.py +45 -0
- lamindb/migrations/0064_alter_artifact_version_alter_collection_version_and_more.py +33 -0
- lamindb/migrations/0065_remove_collection_feature_sets_and_more.py +22 -0
- lamindb/migrations/0066_alter_artifact__feature_values_and_more.py +352 -0
- lamindb/migrations/0067_alter_featurevalue_unique_together_and_more.py +20 -0
- lamindb/migrations/0068_alter_artifactulabel_unique_together_and_more.py +20 -0
- lamindb/migrations/0069_alter_artifact__accessor_alter_artifact__hash_type_and_more.py +1294 -0
- lamindb/migrations/0069_squashed.py +1770 -0
- lamindb/migrations/0070_lamindbv1_migrate_data.py +78 -0
- lamindb/migrations/0071_lamindbv1_migrate_schema.py +741 -0
- lamindb/migrations/0072_remove_user__branch_code_remove_user_aux_and_more.py +148 -0
- lamindb/migrations/0073_merge_ourprojects.py +945 -0
- lamindb/migrations/0074_lamindbv1_part4.py +374 -0
- lamindb/migrations/0075_lamindbv1_part5.py +276 -0
- lamindb/migrations/0076_lamindbv1_part6.py +621 -0
- lamindb/migrations/0077_lamindbv1_part6b.py +228 -0
- lamindb/migrations/0078_lamindbv1_part6c.py +468 -0
- lamindb/migrations/0079_alter_rundata_value_json_and_more.py +36 -0
- lamindb/migrations/__init__.py +0 -0
- lamindb/models.py +4064 -0
- {lamindb-0.77.2.dist-info → lamindb-1.0rc1.dist-info}/METADATA +15 -20
- lamindb-1.0rc1.dist-info/RECORD +100 -0
- {lamindb-0.77.2.dist-info → lamindb-1.0rc1.dist-info}/WHEEL +1 -1
- lamindb/core/subsettings/_transform_settings.py +0 -21
- lamindb-0.77.2.dist-info/RECORD +0 -63
- {lamindb-0.77.2.dist-info → lamindb-1.0rc1.dist-info}/LICENSE +0 -0
@@ -0,0 +1,374 @@
|
|
1
|
+
# Generated by Django 5.2 on 2025-01-13 08:12
|
2
|
+
|
3
|
+
import django.db.models.deletion
|
4
|
+
from django.db import migrations, models
|
5
|
+
|
6
|
+
import lamindb.base.fields
|
7
|
+
|
8
|
+
|
9
|
+
def migrate_refs_to_aux(apps, schema_editor):
|
10
|
+
Reference = apps.get_model("lamindb", "Reference")
|
11
|
+
|
12
|
+
for ref in Reference.objects.all():
|
13
|
+
# Get existing _aux or initialize new dict
|
14
|
+
aux_data = ref._aux or {}
|
15
|
+
|
16
|
+
# Create or update the adhoc section
|
17
|
+
aux_data["adhoc"] = {
|
18
|
+
"preprint": ref.preprint,
|
19
|
+
"public": ref.public,
|
20
|
+
"journal": ref.journal,
|
21
|
+
}
|
22
|
+
|
23
|
+
ref._aux = aux_data
|
24
|
+
ref.save(update_fields=["_aux"])
|
25
|
+
|
26
|
+
|
27
|
+
class Migration(migrations.Migration):
|
28
|
+
dependencies = [
|
29
|
+
("lamindb", "0073_merge_ourprojects"),
|
30
|
+
]
|
31
|
+
|
32
|
+
operations = [
|
33
|
+
migrations.RemoveField(
|
34
|
+
model_name="ulabel",
|
35
|
+
name="is_concept",
|
36
|
+
),
|
37
|
+
migrations.AddField(
|
38
|
+
model_name="ulabel",
|
39
|
+
name="is_type",
|
40
|
+
field=lamindb.base.fields.BooleanField(
|
41
|
+
blank=True, db_index=True, default=None, null=True
|
42
|
+
),
|
43
|
+
),
|
44
|
+
migrations.AddField(
|
45
|
+
model_name="ulabel",
|
46
|
+
name="type",
|
47
|
+
field=lamindb.base.fields.ForeignKey(
|
48
|
+
blank=True,
|
49
|
+
null=True,
|
50
|
+
on_delete=django.db.models.deletion.PROTECT,
|
51
|
+
related_name="records",
|
52
|
+
to="lamindb.ulabel",
|
53
|
+
),
|
54
|
+
),
|
55
|
+
migrations.AlterField(
|
56
|
+
model_name="ulabel",
|
57
|
+
name="name",
|
58
|
+
field=lamindb.base.fields.CharField(
|
59
|
+
blank=True, db_index=True, default=None, max_length=150
|
60
|
+
),
|
61
|
+
),
|
62
|
+
migrations.AddField(
|
63
|
+
model_name="feature",
|
64
|
+
name="is_type",
|
65
|
+
field=lamindb.base.fields.BooleanField(
|
66
|
+
blank=True, db_index=True, default=None, null=True
|
67
|
+
),
|
68
|
+
),
|
69
|
+
migrations.AddField(
|
70
|
+
model_name="featureset",
|
71
|
+
name="is_type",
|
72
|
+
field=lamindb.base.fields.BooleanField(
|
73
|
+
blank=True, db_index=True, default=None, null=True
|
74
|
+
),
|
75
|
+
),
|
76
|
+
migrations.AddField(
|
77
|
+
model_name="featureset",
|
78
|
+
name="type",
|
79
|
+
field=lamindb.base.fields.ForeignKey(
|
80
|
+
blank=True,
|
81
|
+
null=True,
|
82
|
+
on_delete=django.db.models.deletion.PROTECT,
|
83
|
+
related_name="records",
|
84
|
+
to="lamindb.featureset",
|
85
|
+
),
|
86
|
+
),
|
87
|
+
migrations.AddField(
|
88
|
+
model_name="param",
|
89
|
+
name="is_type",
|
90
|
+
field=lamindb.base.fields.BooleanField(
|
91
|
+
blank=True, db_index=True, default=None, null=True
|
92
|
+
),
|
93
|
+
),
|
94
|
+
migrations.AddField(
|
95
|
+
model_name="reference",
|
96
|
+
name="is_type",
|
97
|
+
field=lamindb.base.fields.BooleanField(
|
98
|
+
blank=True, db_index=True, default=None, null=True
|
99
|
+
),
|
100
|
+
),
|
101
|
+
migrations.AddField(
|
102
|
+
model_name="reference",
|
103
|
+
name="type",
|
104
|
+
field=lamindb.base.fields.ForeignKey(
|
105
|
+
blank=True,
|
106
|
+
null=True,
|
107
|
+
on_delete=django.db.models.deletion.PROTECT,
|
108
|
+
related_name="records",
|
109
|
+
to="lamindb.reference",
|
110
|
+
),
|
111
|
+
),
|
112
|
+
migrations.AlterField(
|
113
|
+
model_name="feature",
|
114
|
+
name="type",
|
115
|
+
field=lamindb.base.fields.ForeignKey(
|
116
|
+
blank=True,
|
117
|
+
null=True,
|
118
|
+
on_delete=django.db.models.deletion.PROTECT,
|
119
|
+
related_name="records",
|
120
|
+
to="lamindb.feature",
|
121
|
+
),
|
122
|
+
),
|
123
|
+
migrations.AlterField(
|
124
|
+
model_name="param",
|
125
|
+
name="type",
|
126
|
+
field=lamindb.base.fields.ForeignKey(
|
127
|
+
blank=True,
|
128
|
+
null=True,
|
129
|
+
on_delete=django.db.models.deletion.PROTECT,
|
130
|
+
related_name="records",
|
131
|
+
to="lamindb.param",
|
132
|
+
),
|
133
|
+
),
|
134
|
+
migrations.RenameField(
|
135
|
+
model_name="project",
|
136
|
+
old_name="contributors",
|
137
|
+
new_name="persons",
|
138
|
+
),
|
139
|
+
migrations.AddField(
|
140
|
+
model_name="project",
|
141
|
+
name="parents",
|
142
|
+
field=models.ManyToManyField(related_name="children", to="lamindb.project"),
|
143
|
+
),
|
144
|
+
migrations.AddField(
|
145
|
+
model_name="project",
|
146
|
+
name="type",
|
147
|
+
field=lamindb.base.fields.CharField(
|
148
|
+
blank=True, db_index=True, default=None, max_length=64, null=True
|
149
|
+
),
|
150
|
+
),
|
151
|
+
migrations.AlterField(
|
152
|
+
model_name="project",
|
153
|
+
name="abbr",
|
154
|
+
field=lamindb.base.fields.CharField(
|
155
|
+
blank=True, db_index=True, default=None, max_length=32, null=True
|
156
|
+
),
|
157
|
+
),
|
158
|
+
migrations.AlterField(
|
159
|
+
model_name="reference",
|
160
|
+
name="abbr",
|
161
|
+
field=lamindb.base.fields.CharField(
|
162
|
+
blank=True, db_index=True, default=None, max_length=32, null=True
|
163
|
+
),
|
164
|
+
),
|
165
|
+
migrations.RenameField(
|
166
|
+
model_name="artifact",
|
167
|
+
old_name="aux",
|
168
|
+
new_name="_aux",
|
169
|
+
),
|
170
|
+
migrations.RenameField(
|
171
|
+
model_name="collection",
|
172
|
+
old_name="aux",
|
173
|
+
new_name="_aux",
|
174
|
+
),
|
175
|
+
migrations.RenameField(
|
176
|
+
model_name="feature",
|
177
|
+
old_name="aux",
|
178
|
+
new_name="_aux",
|
179
|
+
),
|
180
|
+
migrations.RenameField(
|
181
|
+
model_name="featureset",
|
182
|
+
old_name="aux",
|
183
|
+
new_name="_aux",
|
184
|
+
),
|
185
|
+
migrations.RenameField(
|
186
|
+
model_name="featurevalue",
|
187
|
+
old_name="aux",
|
188
|
+
new_name="_aux",
|
189
|
+
),
|
190
|
+
migrations.RenameField(
|
191
|
+
model_name="param",
|
192
|
+
old_name="aux",
|
193
|
+
new_name="_aux",
|
194
|
+
),
|
195
|
+
migrations.RenameField(
|
196
|
+
model_name="paramvalue",
|
197
|
+
old_name="aux",
|
198
|
+
new_name="_aux",
|
199
|
+
),
|
200
|
+
migrations.RenameField(
|
201
|
+
model_name="person",
|
202
|
+
old_name="aux",
|
203
|
+
new_name="_aux",
|
204
|
+
),
|
205
|
+
migrations.RenameField(
|
206
|
+
model_name="project",
|
207
|
+
old_name="aux",
|
208
|
+
new_name="_aux",
|
209
|
+
),
|
210
|
+
migrations.RenameField(
|
211
|
+
model_name="reference",
|
212
|
+
old_name="aux",
|
213
|
+
new_name="_aux",
|
214
|
+
),
|
215
|
+
migrations.RenameField(
|
216
|
+
model_name="run",
|
217
|
+
old_name="aux",
|
218
|
+
new_name="_aux",
|
219
|
+
),
|
220
|
+
migrations.RenameField(
|
221
|
+
model_name="storage",
|
222
|
+
old_name="aux",
|
223
|
+
new_name="_aux",
|
224
|
+
),
|
225
|
+
migrations.RenameField(
|
226
|
+
model_name="transform",
|
227
|
+
old_name="aux",
|
228
|
+
new_name="_aux",
|
229
|
+
),
|
230
|
+
migrations.RenameField(
|
231
|
+
model_name="ulabel",
|
232
|
+
old_name="aux",
|
233
|
+
new_name="_aux",
|
234
|
+
),
|
235
|
+
migrations.AddField(
|
236
|
+
model_name="space",
|
237
|
+
name="uid",
|
238
|
+
field=lamindb.base.fields.CharField(
|
239
|
+
blank=True,
|
240
|
+
db_default="00000000",
|
241
|
+
db_index=True,
|
242
|
+
default="00000000",
|
243
|
+
max_length=12,
|
244
|
+
unique=True,
|
245
|
+
),
|
246
|
+
),
|
247
|
+
# migrate references
|
248
|
+
migrations.RunPython(
|
249
|
+
migrate_refs_to_aux,
|
250
|
+
),
|
251
|
+
# Then remove the old fields
|
252
|
+
migrations.RemoveField(
|
253
|
+
model_name="reference",
|
254
|
+
name="preprint",
|
255
|
+
),
|
256
|
+
migrations.RemoveField(
|
257
|
+
model_name="reference",
|
258
|
+
name="public",
|
259
|
+
),
|
260
|
+
migrations.RemoveField(
|
261
|
+
model_name="reference",
|
262
|
+
name="journal",
|
263
|
+
),
|
264
|
+
migrations.AlterField(
|
265
|
+
model_name="artifact",
|
266
|
+
name="_aux",
|
267
|
+
field=lamindb.base.fields.JSONField(
|
268
|
+
blank=True, db_default=None, default=None, null=True
|
269
|
+
),
|
270
|
+
),
|
271
|
+
migrations.AlterField(
|
272
|
+
model_name="artifact",
|
273
|
+
name="_curator",
|
274
|
+
field=lamindb.base.fields.JSONField(
|
275
|
+
blank=True, db_default=None, default=None, null=True
|
276
|
+
),
|
277
|
+
),
|
278
|
+
migrations.AlterField(
|
279
|
+
model_name="collection",
|
280
|
+
name="_aux",
|
281
|
+
field=lamindb.base.fields.JSONField(
|
282
|
+
blank=True, db_default=None, default=None, null=True
|
283
|
+
),
|
284
|
+
),
|
285
|
+
migrations.AlterField(
|
286
|
+
model_name="feature",
|
287
|
+
name="_aux",
|
288
|
+
field=lamindb.base.fields.JSONField(
|
289
|
+
blank=True, db_default=None, default=None, null=True
|
290
|
+
),
|
291
|
+
),
|
292
|
+
migrations.AlterField(
|
293
|
+
model_name="featureset",
|
294
|
+
name="_aux",
|
295
|
+
field=lamindb.base.fields.JSONField(
|
296
|
+
blank=True, db_default=None, default=None, null=True
|
297
|
+
),
|
298
|
+
),
|
299
|
+
migrations.AlterField(
|
300
|
+
model_name="featurevalue",
|
301
|
+
name="_aux",
|
302
|
+
field=lamindb.base.fields.JSONField(
|
303
|
+
blank=True, db_default=None, default=None, null=True
|
304
|
+
),
|
305
|
+
),
|
306
|
+
migrations.AlterField(
|
307
|
+
model_name="param",
|
308
|
+
name="_aux",
|
309
|
+
field=lamindb.base.fields.JSONField(
|
310
|
+
blank=True, db_default=None, default=None, null=True
|
311
|
+
),
|
312
|
+
),
|
313
|
+
migrations.AlterField(
|
314
|
+
model_name="paramvalue",
|
315
|
+
name="_aux",
|
316
|
+
field=lamindb.base.fields.JSONField(
|
317
|
+
blank=True, db_default=None, default=None, null=True
|
318
|
+
),
|
319
|
+
),
|
320
|
+
migrations.AlterField(
|
321
|
+
model_name="person",
|
322
|
+
name="_aux",
|
323
|
+
field=lamindb.base.fields.JSONField(
|
324
|
+
blank=True, db_default=None, default=None, null=True
|
325
|
+
),
|
326
|
+
),
|
327
|
+
migrations.AlterField(
|
328
|
+
model_name="project",
|
329
|
+
name="_aux",
|
330
|
+
field=lamindb.base.fields.JSONField(
|
331
|
+
blank=True, db_default=None, default=None, null=True
|
332
|
+
),
|
333
|
+
),
|
334
|
+
migrations.AlterField(
|
335
|
+
model_name="reference",
|
336
|
+
name="_aux",
|
337
|
+
field=lamindb.base.fields.JSONField(
|
338
|
+
blank=True, db_default=None, default=None, null=True
|
339
|
+
),
|
340
|
+
),
|
341
|
+
migrations.AlterField(
|
342
|
+
model_name="run",
|
343
|
+
name="_aux",
|
344
|
+
field=lamindb.base.fields.JSONField(
|
345
|
+
blank=True, db_default=None, default=None, null=True
|
346
|
+
),
|
347
|
+
),
|
348
|
+
migrations.AlterField(
|
349
|
+
model_name="storage",
|
350
|
+
name="_aux",
|
351
|
+
field=lamindb.base.fields.JSONField(
|
352
|
+
blank=True, db_default=None, default=None, null=True
|
353
|
+
),
|
354
|
+
),
|
355
|
+
migrations.AlterField(
|
356
|
+
model_name="transform",
|
357
|
+
name="_aux",
|
358
|
+
field=lamindb.base.fields.JSONField(
|
359
|
+
blank=True, db_default=None, default=None, null=True
|
360
|
+
),
|
361
|
+
),
|
362
|
+
migrations.AlterField(
|
363
|
+
model_name="ulabel",
|
364
|
+
name="_aux",
|
365
|
+
field=lamindb.base.fields.JSONField(
|
366
|
+
blank=True, db_default=None, default=None, null=True
|
367
|
+
),
|
368
|
+
),
|
369
|
+
migrations.RenameField(
|
370
|
+
model_name="reference",
|
371
|
+
old_name="published_at",
|
372
|
+
new_name="date",
|
373
|
+
),
|
374
|
+
]
|
@@ -0,0 +1,276 @@
|
|
1
|
+
# Generated by Django 5.2 on 2025-01-13 14:10
|
2
|
+
|
3
|
+
import django.db.models.deletion
|
4
|
+
import lamindb_setup
|
5
|
+
from django.db import migrations, models
|
6
|
+
|
7
|
+
import lamindb.base.fields
|
8
|
+
import lamindb.base.users
|
9
|
+
import lamindb.models
|
10
|
+
|
11
|
+
|
12
|
+
class Migration(migrations.Migration):
|
13
|
+
dependencies = [
|
14
|
+
("lamindb", "0074_lamindbv1_part4"),
|
15
|
+
]
|
16
|
+
|
17
|
+
operations = [
|
18
|
+
migrations.RenameModel(
|
19
|
+
old_name="FeatureSet",
|
20
|
+
new_name="Schema",
|
21
|
+
),
|
22
|
+
migrations.RenameModel(
|
23
|
+
old_name="ArtifactFeatureSet",
|
24
|
+
new_name="ArtifactSchema",
|
25
|
+
),
|
26
|
+
migrations.RenameField(
|
27
|
+
model_name="feature",
|
28
|
+
old_name="feature_sets",
|
29
|
+
new_name="schemas",
|
30
|
+
),
|
31
|
+
migrations.RenameField(
|
32
|
+
model_name="artifact",
|
33
|
+
old_name="feature_sets",
|
34
|
+
new_name="_schemas_m2m",
|
35
|
+
),
|
36
|
+
migrations.RenameField(
|
37
|
+
model_name="artifactschema",
|
38
|
+
old_name="featureset",
|
39
|
+
new_name="schema",
|
40
|
+
),
|
41
|
+
migrations.RenameModel(
|
42
|
+
old_name="FeatureSetFeature",
|
43
|
+
new_name="SchemaFeature",
|
44
|
+
),
|
45
|
+
migrations.RenameField(
|
46
|
+
model_name="schemafeature",
|
47
|
+
old_name="featureset",
|
48
|
+
new_name="schema",
|
49
|
+
),
|
50
|
+
migrations.AddField(
|
51
|
+
model_name="artifact",
|
52
|
+
name="schema",
|
53
|
+
field=lamindb.base.fields.ForeignKey(
|
54
|
+
blank=True,
|
55
|
+
default=None,
|
56
|
+
null=True,
|
57
|
+
on_delete=django.db.models.deletion.PROTECT,
|
58
|
+
related_name="artifacts",
|
59
|
+
to="lamindb.schema",
|
60
|
+
),
|
61
|
+
),
|
62
|
+
migrations.AlterField(
|
63
|
+
model_name="artifact",
|
64
|
+
name="_schemas_m2m",
|
65
|
+
field=models.ManyToManyField(
|
66
|
+
related_name="_artifacts_m2m",
|
67
|
+
through="lamindb.ArtifactSchema",
|
68
|
+
to="lamindb.schema",
|
69
|
+
),
|
70
|
+
),
|
71
|
+
migrations.AlterField(
|
72
|
+
model_name="artifactschema",
|
73
|
+
name="artifact",
|
74
|
+
field=lamindb.base.fields.ForeignKey(
|
75
|
+
blank=True,
|
76
|
+
on_delete=django.db.models.deletion.CASCADE,
|
77
|
+
related_name="_links_schema",
|
78
|
+
to="lamindb.artifact",
|
79
|
+
),
|
80
|
+
),
|
81
|
+
migrations.AlterField(
|
82
|
+
model_name="artifactschema",
|
83
|
+
name="schema",
|
84
|
+
field=lamindb.base.fields.ForeignKey(
|
85
|
+
blank=True,
|
86
|
+
on_delete=django.db.models.deletion.PROTECT,
|
87
|
+
related_name="_links_artifact",
|
88
|
+
to="lamindb.schema",
|
89
|
+
),
|
90
|
+
),
|
91
|
+
migrations.RemoveField(
|
92
|
+
model_name="artifact",
|
93
|
+
name="_curator",
|
94
|
+
),
|
95
|
+
migrations.AddField(
|
96
|
+
model_name="feature",
|
97
|
+
name="_curation",
|
98
|
+
field=lamindb.base.fields.JSONField(
|
99
|
+
blank=True, db_default=None, default=None, null=True
|
100
|
+
),
|
101
|
+
),
|
102
|
+
migrations.AddField(
|
103
|
+
model_name="feature",
|
104
|
+
name="array_size",
|
105
|
+
field=models.IntegerField(db_index=True, default=0),
|
106
|
+
),
|
107
|
+
migrations.AddField(
|
108
|
+
model_name="feature",
|
109
|
+
name="proxy_dtype",
|
110
|
+
field=lamindb.base.fields.CharField(
|
111
|
+
blank=True, null=True, default=None, max_length=255
|
112
|
+
),
|
113
|
+
),
|
114
|
+
migrations.AddField(
|
115
|
+
model_name="feature",
|
116
|
+
name="array_rank",
|
117
|
+
field=models.SmallIntegerField(db_index=True, default=0),
|
118
|
+
),
|
119
|
+
migrations.AddField(
|
120
|
+
model_name="feature",
|
121
|
+
name="array_shape",
|
122
|
+
field=lamindb.base.fields.JSONField(
|
123
|
+
blank=True, db_default=None, default=None, null=True
|
124
|
+
),
|
125
|
+
),
|
126
|
+
migrations.AddField(
|
127
|
+
model_name="project",
|
128
|
+
name="_status_code",
|
129
|
+
field=models.SmallIntegerField(db_index=True, default=0),
|
130
|
+
),
|
131
|
+
migrations.AddField(
|
132
|
+
model_name="project",
|
133
|
+
name="end_date",
|
134
|
+
field=lamindb.base.fields.DateField(blank=True, default=None, null=True),
|
135
|
+
),
|
136
|
+
migrations.AddField(
|
137
|
+
model_name="project",
|
138
|
+
name="start_date",
|
139
|
+
field=lamindb.base.fields.DateField(blank=True, default=None, null=True),
|
140
|
+
),
|
141
|
+
migrations.AddField(
|
142
|
+
model_name="schema",
|
143
|
+
name="_curation",
|
144
|
+
field=lamindb.base.fields.JSONField(
|
145
|
+
blank=True, db_default=None, default=None, null=True
|
146
|
+
),
|
147
|
+
),
|
148
|
+
migrations.AddField(
|
149
|
+
model_name="schema",
|
150
|
+
name="composite",
|
151
|
+
field=lamindb.base.fields.ForeignKey(
|
152
|
+
blank=True,
|
153
|
+
default=None,
|
154
|
+
null=True,
|
155
|
+
on_delete=django.db.models.deletion.PROTECT,
|
156
|
+
related_name="components",
|
157
|
+
to="lamindb.schema",
|
158
|
+
),
|
159
|
+
),
|
160
|
+
migrations.AddField(
|
161
|
+
model_name="schema",
|
162
|
+
name="maximal_set",
|
163
|
+
field=lamindb.base.fields.BooleanField(
|
164
|
+
blank=True, db_index=True, default=False
|
165
|
+
),
|
166
|
+
),
|
167
|
+
migrations.AddField(
|
168
|
+
model_name="schema",
|
169
|
+
name="minimal_set",
|
170
|
+
field=lamindb.base.fields.BooleanField(
|
171
|
+
blank=True, db_index=True, default=True
|
172
|
+
),
|
173
|
+
),
|
174
|
+
migrations.AddField(
|
175
|
+
model_name="schema",
|
176
|
+
name="ordered_set",
|
177
|
+
field=lamindb.base.fields.BooleanField(
|
178
|
+
blank=True, db_index=True, default=False
|
179
|
+
),
|
180
|
+
),
|
181
|
+
migrations.AddField(
|
182
|
+
model_name="schema",
|
183
|
+
name="otype",
|
184
|
+
field=lamindb.base.fields.CharField(
|
185
|
+
blank=True, db_index=True, default=None, max_length=64, null=True
|
186
|
+
),
|
187
|
+
),
|
188
|
+
migrations.AddField(
|
189
|
+
model_name="schema",
|
190
|
+
name="slot",
|
191
|
+
field=lamindb.base.fields.CharField(
|
192
|
+
blank=True, db_index=True, default=None, max_length=100, null=True
|
193
|
+
),
|
194
|
+
),
|
195
|
+
migrations.AddField(
|
196
|
+
model_name="schema",
|
197
|
+
name="validated_by",
|
198
|
+
field=lamindb.base.fields.ForeignKey(
|
199
|
+
blank=True,
|
200
|
+
default=None,
|
201
|
+
null=True,
|
202
|
+
on_delete=django.db.models.deletion.PROTECT,
|
203
|
+
related_name="validated_schemas",
|
204
|
+
to="lamindb.schema",
|
205
|
+
),
|
206
|
+
),
|
207
|
+
migrations.AlterField(
|
208
|
+
model_name="feature",
|
209
|
+
name="dtype",
|
210
|
+
field=lamindb.base.fields.CharField(
|
211
|
+
blank=True, db_index=True, default=None, max_length=255
|
212
|
+
),
|
213
|
+
),
|
214
|
+
migrations.AlterField(
|
215
|
+
model_name="schema",
|
216
|
+
name="hash",
|
217
|
+
field=lamindb.base.fields.CharField(
|
218
|
+
blank=True, db_index=True, default=None, max_length=22, null=True
|
219
|
+
),
|
220
|
+
),
|
221
|
+
migrations.CreateModel(
|
222
|
+
name="SchemaParam",
|
223
|
+
fields=[
|
224
|
+
("id", models.BigAutoField(primary_key=True, serialize=False)),
|
225
|
+
(
|
226
|
+
"param",
|
227
|
+
lamindb.base.fields.ForeignKey(
|
228
|
+
blank=True,
|
229
|
+
on_delete=django.db.models.deletion.PROTECT,
|
230
|
+
related_name="+",
|
231
|
+
to="lamindb.param",
|
232
|
+
),
|
233
|
+
),
|
234
|
+
(
|
235
|
+
"schema",
|
236
|
+
lamindb.base.fields.ForeignKey(
|
237
|
+
blank=True,
|
238
|
+
on_delete=django.db.models.deletion.CASCADE,
|
239
|
+
related_name="+",
|
240
|
+
to="lamindb.schema",
|
241
|
+
),
|
242
|
+
),
|
243
|
+
],
|
244
|
+
options={
|
245
|
+
"unique_together": {("schema", "param")},
|
246
|
+
},
|
247
|
+
bases=(models.Model, lamindb.models.LinkORM),
|
248
|
+
),
|
249
|
+
migrations.AddField(
|
250
|
+
model_name="param",
|
251
|
+
name="schemas",
|
252
|
+
field=models.ManyToManyField(
|
253
|
+
related_name="params",
|
254
|
+
through="lamindb.SchemaParam",
|
255
|
+
to="lamindb.schema",
|
256
|
+
),
|
257
|
+
),
|
258
|
+
migrations.RenameField(
|
259
|
+
model_name="schema",
|
260
|
+
old_name="registry",
|
261
|
+
new_name="itype",
|
262
|
+
),
|
263
|
+
migrations.AlterField(
|
264
|
+
model_name="schema",
|
265
|
+
name="itype",
|
266
|
+
field=lamindb.base.fields.CharField(
|
267
|
+
blank=True, db_index=True, default=None, max_length=120, null=True
|
268
|
+
),
|
269
|
+
),
|
270
|
+
]
|
271
|
+
|
272
|
+
|
273
|
+
if "bionty" in lamindb_setup.settings.instance.modules:
|
274
|
+
Migration.dependencies += [
|
275
|
+
("bionty", "0046_alter_cellline__aux_alter_cellmarker__aux_and_more"),
|
276
|
+
]
|